Wall clock time and date at job start Tue Mar 31 2020 06:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46772 * 2 1 4 4 C 1.52997 * 109.47132 * 120.00255 * 2 1 3 5 5 C 1.53000 * 109.47379 * 65.00020 * 4 2 1 6 6 C 1.53003 * 109.47098 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.46931 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99808 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00023 * 180.02562 * 7 6 5 10 10 C 1.46919 * 120.63255 * 179.97438 * 9 7 6 11 11 C 1.53195 * 108.89273 * 126.34238 * 10 9 7 12 12 C 1.53346 * 109.14901 * 54.57640 * 11 10 9 13 13 C 1.53004 * 109.41904 * 178.67276 * 12 11 10 14 14 C 1.50701 * 109.47085 * 295.13082 * 13 12 11 15 15 H 1.07998 * 120.00293 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99472 * 179.97438 * 14 13 12 17 17 N 1.31505 * 120.00682 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99519 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47056 * 90.00284 * 18 16 14 20 20 H 1.48503 * 109.47155 * 209.99821 * 18 16 14 21 21 H 1.48497 * 109.47425 * 330.00030 * 18 16 14 22 22 C 1.53034 * 109.61010 * 298.71225 * 12 11 10 23 23 C 1.46933 * 120.62741 * 0.02562 * 9 7 6 24 24 H 1.09004 * 109.46672 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47062 * 299.99714 * 1 2 3 26 26 H 1.09002 * 109.47160 * 60.00415 * 1 2 3 27 27 H 1.09000 * 109.46597 * 240.00327 * 2 1 3 28 28 H 1.09002 * 109.47360 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47653 * 299.99940 * 3 2 1 30 30 H 1.09000 * 109.47424 * 59.99977 * 3 2 1 31 31 H 1.09005 * 109.46848 * 304.99503 * 4 2 1 32 32 H 1.09001 * 109.46983 * 185.00236 * 4 2 1 33 33 H 1.08996 * 109.46993 * 60.00073 * 5 4 2 34 34 H 1.09001 * 109.47240 * 300.00058 * 5 4 2 35 35 H 1.09001 * 109.46646 * 60.00027 * 6 5 4 36 36 H 1.09001 * 109.47188 * 300.00170 * 6 5 4 37 37 H 1.09002 * 109.58751 * 246.20189 * 10 9 7 38 38 H 1.08996 * 109.58750 * 6.48373 * 10 9 7 39 39 H 1.08997 * 109.49914 * 174.65962 * 11 10 9 40 40 H 1.09002 * 109.49585 * 294.75599 * 11 10 9 41 41 H 1.09001 * 109.42242 * 58.75065 * 12 11 10 42 42 H 1.09001 * 109.46592 * 55.13132 * 13 12 11 43 43 H 1.08997 * 109.47133 * 175.12697 * 13 12 11 44 44 H 0.97001 * 120.00836 * 179.97438 * 17 16 14 45 45 H 1.08994 * 109.50232 * 301.42239 * 22 12 11 46 46 H 1.09007 * 109.52628 * 181.33900 * 22 12 11 47 47 H 1.08994 * 109.58580 * 353.38021 * 23 9 7 48 48 H 1.09006 * 109.57831 * 113.65514 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1879 6 6 2.1459 -2.9169 2.4368 7 6 1.7478 -4.3691 2.3761 8 8 1.1182 -4.7860 1.4272 9 7 2.0915 -5.2044 3.3764 10 6 1.7101 -6.6226 3.3318 11 6 2.9655 -7.4800 3.5208 12 6 3.6737 -7.0569 4.8134 13 6 4.9108 -7.9319 5.0255 14 6 4.4838 -9.3596 5.2499 15 1 3.4350 -9.6171 5.2424 16 6 5.4322 -10.3370 5.4647 17 7 6.7093 -10.0235 5.4744 18 14 4.9029 -12.1067 5.7435 19 1 4.8302 -12.8129 4.4393 20 1 5.8902 -12.7864 6.6201 21 1 3.5675 -12.1275 6.3928 22 6 4.0983 -5.5902 4.7100 23 6 2.8537 -4.7139 4.5328 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6055 -0.2617 2.1369 32 1 3.1264 -0.6443 1.2951 33 1 2.0700 -2.6550 0.3002 34 1 0.5490 -2.2725 1.1420 35 1 1.7116 -2.4575 3.3248 36 1 3.2323 -2.8399 2.4823 37 1 0.9989 -6.8350 4.1300 38 1 1.2552 -6.8484 2.3674 39 1 2.6824 -8.5306 3.5843 40 1 3.6366 -7.3341 2.6743 41 1 2.9935 -7.1794 5.6563 42 1 5.5495 -7.8778 4.1439 43 1 5.4623 -7.5765 5.8959 44 1 7.3765 -10.7111 5.6259 45 1 4.7588 -5.4622 3.8525 46 1 4.6224 -5.2976 5.6199 47 1 3.1554 -3.6809 4.3600 48 1 2.2345 -4.7687 5.4283 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592817622.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:19 Heat of formation + Delta-G solvation = -88.130454 kcal Electronic energy + Delta-G solvation = -22284.326598 eV Core-core repulsion = 19144.096771 eV Total energy + Delta-G solvation = -3140.229827 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.03772 -37.64729 -36.94332 -34.01647 -33.03170 -32.05713 -30.74745 -28.39056 -27.44914 -27.05703 -24.59900 -23.12059 -22.26391 -21.45529 -20.22319 -19.67003 -18.52143 -16.90812 -16.27950 -16.07285 -15.66297 -15.16663 -14.55159 -14.43870 -14.27043 -13.86074 -13.60338 -13.43113 -13.10437 -12.98465 -12.79428 -12.51604 -12.31064 -12.09774 -11.94709 -11.84278 -11.69457 -11.19430 -11.17735 -11.01977 -10.89952 -10.81244 -10.71835 -10.68128 -10.60319 -10.42626 -10.17716 -9.66246 -9.57067 -9.26350 -8.97504 -8.36804 -8.31907 -6.00812 -4.02624 2.78160 3.19242 3.31108 3.37766 3.40423 4.42506 4.44977 4.58834 4.63540 4.76973 4.96646 5.00514 5.10780 5.31892 5.33212 5.34589 5.36552 5.39471 5.43180 5.49268 5.53013 5.59086 5.62460 5.63207 5.70961 5.73291 5.83571 5.91852 5.95288 5.98802 6.01924 6.08481 6.19848 6.26156 6.34689 6.38395 6.53191 6.67322 6.98350 7.01208 7.10862 7.61151 7.65270 7.79849 7.98664 8.34077 8.41526 9.03761 9.61317 11.10452 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.040918 B = 0.002687 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.139020 B =10419.467282 C =10733.674505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.115 4.115 5 C -0.105 4.105 6 C -0.140 4.140 7 C 0.511 3.489 8 O -0.552 6.552 9 N -0.607 5.607 10 C 0.108 3.892 11 C -0.117 4.117 12 C -0.081 4.081 13 C 0.028 3.972 14 C -0.516 4.516 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.889 3.111 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.130 4.130 23 C 0.107 3.893 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.015 0.985 43 H 0.015 0.985 44 H 0.260 0.740 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.077 0.923 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.385 20.278 -5.994 23.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.153 4.153 5 C -0.143 4.143 6 C -0.180 4.180 7 C 0.299 3.701 8 O -0.430 6.430 9 N -0.340 5.340 10 C -0.014 4.014 11 C -0.155 4.155 12 C -0.100 4.100 13 C -0.009 4.009 14 C -0.554 4.554 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.717 3.283 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.169 4.169 23 C -0.016 4.016 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.033 0.967 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.096 0.904 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.547 19.976 -6.462 23.064 hybrid contribution -0.010 -1.106 0.346 1.159 sum -9.557 18.870 -6.116 22.019 Atomic orbital electron populations 1.21905 0.95310 1.02131 1.01406 1.21115 0.95976 0.95975 0.98596 1.21847 1.00913 0.96132 1.01582 1.21677 1.00833 0.95003 0.97776 1.21406 1.01957 0.93919 0.97008 1.21714 1.02962 0.92451 1.00840 1.20694 0.79211 0.88348 0.81808 1.90659 1.41032 1.78141 1.33196 1.48214 1.54727 1.10048 1.21040 1.21756 0.97882 0.79369 1.02420 1.21940 0.95265 0.99754 0.98561 1.21245 0.99751 0.92725 0.96232 1.19122 0.91417 0.93491 0.96889 1.21239 0.92808 0.92961 1.48417 0.92597 1.25020 0.94976 0.98934 0.95566 1.69954 0.99982 1.33388 1.50211 0.86640 0.78360 0.85165 0.78110 1.20706 1.21304 1.19906 1.22036 0.95999 0.96765 1.02062 1.21844 0.93610 0.98052 0.88111 0.92136 0.92845 0.93019 0.91186 0.92747 0.92885 0.92788 0.91978 0.91908 0.91303 0.91075 0.89222 0.89003 0.92028 0.89778 0.89829 0.92433 0.92369 0.96672 0.96622 0.93054 0.92003 0.91059 0.90429 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.95 37.16 0.33 -0.80 16 2 C -0.10 -0.75 2.92 -90.62 -0.26 -1.01 16 3 C -0.15 -0.97 9.19 37.16 0.34 -0.63 16 4 C -0.12 -0.90 4.68 -26.73 -0.13 -1.03 16 5 C -0.11 -1.05 4.26 -26.73 -0.11 -1.17 16 6 C -0.14 -1.44 4.05 -27.88 -0.11 -1.56 16 7 C 0.51 7.48 7.70 -10.99 -0.08 7.39 16 8 O -0.55 -9.98 15.39 5.56 0.09 -9.89 16 9 N -0.61 -8.86 2.97 -172.74 -0.51 -9.38 16 10 C 0.11 1.72 6.42 -3.71 -0.02 1.70 16 11 C -0.12 -2.15 5.21 -26.45 -0.14 -2.29 16 12 C -0.08 -1.55 2.10 -90.42 -0.19 -1.74 16 13 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 14 C -0.52 -14.07 8.39 -34.44 -0.29 -14.36 16 15 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -26.61 13.28 55.43 0.74 -25.88 16 18 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 22 C -0.13 -2.01 5.37 -26.59 -0.14 -2.16 16 23 C 0.11 1.33 6.34 -3.68 -0.02 1.31 16 24 H 0.06 0.50 6.56 -51.93 -0.34 0.16 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 34 H 0.07 0.78 6.52 -51.93 -0.34 0.44 16 35 H 0.09 0.76 7.94 -51.93 -0.41 0.35 16 36 H 0.09 0.85 7.69 -51.93 -0.40 0.45 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 1.41 7.00 -51.93 -0.36 1.05 16 39 H 0.08 1.64 6.93 -51.93 -0.36 1.28 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 47 H 0.08 0.75 5.93 -51.93 -0.31 0.44 16 48 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 370.32 15.07 5.58 5.58 Total: -1.00 -31.04 370.32 -9.40 -40.44 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -9.21 Total: -3.00 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -1.05 Total: -14.30 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.22 Total: -35.25 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.04 -9.40 -40.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592817622.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.687 kcal (2) G-P(sol) polarization free energy of solvation -31.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds