Wall clock time and date at job start Tue Mar 31 2020 05:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31529 * 1 3 3 Si 1.86795 * 119.99802 * 2 1 4 4 H 1.48501 * 109.47389 * 269.99885 * 3 2 1 5 5 H 1.48505 * 109.47306 * 29.99745 * 3 2 1 6 6 H 1.48499 * 109.47072 * 149.99985 * 3 2 1 7 7 C 1.37875 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99388 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00139 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47023 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47176 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47276 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00202 * 179.97438 * 12 11 10 14 14 O 1.21282 * 119.99905 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.00101 * 179.97438 * 13 12 11 16 16 C 1.52995 * 109.47153 * 180.02562 * 15 13 12 17 17 C 1.53003 * 109.47154 * 180.02562 * 16 15 13 18 18 C 1.54065 * 108.87686 * 297.97781 * 17 16 15 19 19 C 1.54066 * 112.81762 * 197.50425 * 18 17 16 20 20 C 1.50470 * 112.49875 * 318.28617 * 19 18 17 21 21 C 1.54246 * 108.51998 * 94.14981 * 20 19 18 22 22 C 1.45537 * 112.40731 * 280.01038 * 21 20 19 23 23 C 1.50473 * 108.87636 * 175.00284 * 17 16 15 24 24 H 0.96993 * 119.99654 * 0.02562 * 1 2 3 25 25 H 1.09008 * 109.46874 * 59.99905 * 9 7 2 26 26 H 1.08995 * 109.47263 * 300.00067 * 9 7 2 27 27 H 1.08999 * 109.46883 * 59.99793 * 10 9 7 28 28 H 1.08998 * 109.47068 * 299.99931 * 10 9 7 29 29 H 1.08996 * 109.46935 * 59.99679 * 11 10 9 30 30 H 1.09004 * 109.46497 * 299.99989 * 11 10 9 31 31 H 0.97003 * 120.00055 * 0.02562 * 12 11 10 32 32 H 1.08999 * 109.46758 * 60.00291 * 15 13 12 33 33 H 1.08998 * 109.47194 * 300.00429 * 15 13 12 34 34 H 1.09009 * 109.47084 * 60.00274 * 16 15 13 35 35 H 1.08995 * 109.47404 * 300.00730 * 16 15 13 36 36 H 1.09002 * 108.85122 * 56.44317 * 17 16 15 37 37 H 1.09005 * 108.81720 * 318.36964 * 18 17 16 38 38 H 1.09004 * 108.81387 * 76.75211 * 18 17 16 39 39 H 1.08997 * 108.87949 * 197.51000 * 19 18 17 40 40 H 1.09001 * 108.87760 * 79.06417 * 19 18 17 41 41 H 1.09003 * 109.63195 * 334.43897 * 20 19 18 42 42 H 1.09001 * 109.62960 * 213.85940 * 20 19 18 43 43 H 1.09001 * 108.89247 * 40.76541 * 21 20 19 44 44 H 1.09004 * 108.89281 * 159.35535 * 21 20 19 45 45 H 1.09000 * 108.89458 * 182.68905 * 22 21 20 46 46 H 1.08995 * 108.89787 * 301.28165 * 22 21 20 47 47 H 1.09006 * 109.62936 * 95.21889 * 23 17 16 48 48 H 1.08998 * 109.78811 * 334.73404 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 -0.0001 12 7 2.4324 -6.1006 0.0005 13 6 1.9832 -7.3713 0.0006 14 8 0.7908 -7.5929 -0.0003 15 6 2.9625 -8.5167 0.0007 16 6 2.1976 -9.8417 0.0001 17 6 3.1918 -11.0046 0.0008 18 6 4.0364 -10.9391 -1.2860 19 6 4.7537 -12.2664 -1.5982 20 6 5.3386 -12.9077 -0.3691 21 6 4.3178 -13.9214 0.1876 22 6 3.2678 -13.2809 0.9657 23 6 2.4300 -12.2964 0.1244 24 1 -0.4849 0.8400 -0.0004 25 1 0.6248 -2.5570 -0.8897 26 1 0.6241 -2.5567 0.8902 27 1 2.8721 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8894 29 1 0.8541 -5.0445 -0.8903 30 1 0.8535 -5.0450 0.8897 31 1 3.3861 -5.9234 0.0016 32 1 3.5891 -8.4589 0.8907 33 1 3.5892 -8.4590 -0.8893 34 1 1.5712 -9.8993 -0.8901 35 1 1.5705 -9.8996 0.8898 36 1 3.8535 -10.9018 0.8609 37 1 3.3842 -10.6868 -2.1222 38 1 4.7849 -10.1544 -1.1756 39 1 5.5553 -12.0748 -2.3114 40 1 4.0398 -12.9553 -2.0496 41 1 5.5422 -12.1436 0.3811 42 1 6.2624 -13.4241 -0.6299 43 1 3.8629 -14.4576 -0.6452 44 1 4.8407 -14.6357 0.8236 45 1 2.6089 -14.0496 1.3695 46 1 3.7235 -12.7369 1.7930 47 1 2.2579 -12.7162 -0.8668 48 1 1.4743 -12.1156 0.6163 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593975871.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:35 Heat of formation + Delta-G solvation = -97.390674 kcal Electronic energy + Delta-G solvation = -21599.065616 eV Core-core repulsion = 18458.434235 eV Total energy + Delta-G solvation = -3140.631381 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.87525 -39.07662 -35.52004 -34.69031 -33.29452 -32.58385 -31.40473 -30.32341 -26.97206 -25.57282 -24.96757 -23.17924 -22.07589 -20.90738 -20.67962 -19.72517 -19.22208 -16.87805 -16.42862 -15.98309 -15.71957 -15.45896 -15.09322 -14.91397 -14.45034 -14.32099 -14.15197 -13.54915 -13.33765 -13.09212 -12.93659 -12.49685 -12.33454 -12.27260 -11.85180 -11.74507 -11.63298 -11.31304 -11.04834 -10.90701 -10.90028 -10.72864 -10.68166 -10.60296 -10.50378 -10.43329 -10.40777 -9.86542 -9.81996 -9.33534 -9.10912 -8.73720 -8.37516 -6.02119 -4.05285 2.84952 3.30390 3.36628 3.39147 3.46687 4.26914 4.34731 4.43812 4.50647 4.70922 4.78424 4.80922 4.93424 5.04918 5.06978 5.08657 5.17012 5.23239 5.33494 5.44465 5.49758 5.51146 5.65825 5.71627 5.75888 5.78670 5.83599 5.85740 5.86013 5.89118 5.94873 5.98464 6.06473 6.10997 6.17336 6.18714 6.30390 6.52521 6.60546 6.85054 7.01138 7.63243 7.75945 7.76178 7.96678 8.37298 8.46248 9.01407 9.58832 11.09149 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.045319 B = 0.002108 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.695494 B =13276.767100 C =13634.452493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.116 3.884 12 N -0.729 5.729 13 C 0.504 3.496 14 O -0.547 6.547 15 C -0.142 4.142 16 C -0.100 4.100 17 C -0.086 4.086 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.113 4.113 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.398 0.602 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.059 0.941 47 H 0.064 0.936 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.945 -27.485 -0.457 29.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.146 4.146 3 Si 0.722 3.278 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C -0.007 4.007 12 N -0.380 5.380 13 C 0.290 3.710 14 O -0.425 6.425 15 C -0.182 4.182 16 C -0.138 4.138 17 C -0.104 4.104 18 C -0.152 4.152 19 C -0.157 4.157 20 C -0.156 4.156 21 C -0.155 4.155 22 C -0.156 4.156 23 C -0.151 4.151 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.231 0.769 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.914 -27.509 -0.455 29.244 hybrid contribution 0.922 1.175 -0.025 1.494 sum 10.837 -26.333 -0.480 28.480 Atomic orbital electron populations 1.69972 1.06051 1.26684 1.50555 1.25044 0.94878 0.99332 0.95299 0.86571 0.79783 0.83405 0.78088 1.20662 1.21199 1.19902 1.21204 0.92984 0.90951 1.50917 0.92651 1.19035 0.93871 0.90890 0.97646 1.21882 0.99738 0.93418 1.00811 1.21623 0.91957 0.85271 1.01866 1.46263 1.10702 1.06120 1.74885 1.20753 0.89853 0.84204 0.76157 1.90692 1.17135 1.84910 1.49758 1.21754 0.98518 0.93828 1.04132 1.21537 0.97226 0.91462 1.03556 1.21007 0.96543 0.94643 0.98215 1.22037 0.98605 0.97080 0.97485 1.21344 0.99528 0.97119 0.97667 1.21346 0.97800 0.98443 0.97967 1.20496 0.96845 0.98128 1.00025 1.20487 0.97496 0.98923 0.98719 1.21406 0.98364 0.94898 1.00412 0.92927 0.96300 0.96275 0.92765 0.92776 0.91895 0.91905 0.76884 0.89220 0.89042 0.91219 0.91178 0.91317 0.92036 0.92155 0.92522 0.92207 0.91556 0.92269 0.92316 0.92652 0.92493 0.92180 0.91712 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.60 5.46 -17.81 -0.10 1.50 16 3 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 11 C 0.12 2.07 5.67 -4.04 -0.02 2.05 16 12 N -0.73 -10.43 5.56 -60.30 -0.33 -10.76 16 13 C 0.50 7.32 7.83 -10.99 -0.09 7.24 16 14 O -0.55 -10.30 15.98 5.56 0.09 -10.21 16 15 C -0.14 -1.38 5.42 -27.89 -0.15 -1.53 16 16 C -0.10 -0.98 3.71 -26.73 -0.10 -1.08 16 17 C -0.09 -0.64 1.71 -91.32 -0.16 -0.80 16 18 C -0.11 -0.80 4.42 -25.62 -0.11 -0.92 16 19 C -0.12 -0.76 5.31 -27.44 -0.15 -0.91 16 20 C -0.12 -0.72 5.61 -27.34 -0.15 -0.87 16 21 C -0.12 -0.71 5.26 -29.60 -0.16 -0.87 16 22 C -0.12 -0.77 5.26 -29.60 -0.16 -0.93 16 23 C -0.11 -0.83 5.13 -27.34 -0.14 -0.97 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.40 4.50 8.47 -40.82 -0.35 4.15 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.74 6.83 -51.93 -0.35 0.39 16 34 H 0.07 0.77 8.03 -51.92 -0.42 0.36 16 35 H 0.07 0.77 7.92 -51.93 -0.41 0.36 16 36 H 0.07 0.51 6.62 -51.93 -0.34 0.16 16 37 H 0.06 0.47 7.93 -51.93 -0.41 0.06 16 38 H 0.06 0.40 7.36 -51.93 -0.38 0.02 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.39 6.63 -51.93 -0.34 0.05 16 41 H 0.07 0.42 6.97 -51.93 -0.36 0.06 16 42 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.06 0.36 7.47 -51.93 -0.39 -0.03 16 44 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 0.40 7.46 -51.93 -0.39 0.01 16 47 H 0.06 0.48 6.98 -51.93 -0.36 0.12 16 48 H 0.07 0.52 7.60 -51.93 -0.39 0.12 16 LS Contribution 367.72 15.07 5.54 5.54 Total: -1.00 -31.94 367.72 -10.16 -42.09 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -9.10 Total: -1.87 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -2.07 Total: -15.12 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.40 Total: -36.96 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.94 -10.16 -42.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593975871.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.297 kcal (2) G-P(sol) polarization free energy of solvation -31.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds