Wall clock time and date at job start Tue Mar 31 2020 05:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47529 * 2 1 4 4 C 1.52998 * 109.47243 * 239.99619 * 2 1 3 5 5 N 1.46505 * 109.47178 * 119.99842 * 2 1 3 6 6 N 1.28778 * 125.44704 * 359.97438 * 5 2 1 7 7 N 1.29001 * 108.72387 * 180.02562 * 6 5 2 8 8 C 1.33317 * 107.35302 * 359.97438 * 7 6 5 9 9 C 1.50704 * 126.54597 * 180.02562 * 8 7 6 10 10 N 1.46898 * 109.47041 * 90.02459 * 9 8 7 11 11 C 1.46906 * 110.99888 * 179.97438 * 10 9 8 12 12 C 1.52993 * 109.47378 * 180.02562 * 11 10 9 13 13 C 1.53008 * 109.46733 * 299.99953 * 12 11 10 14 14 C 1.53005 * 109.47212 * 59.99438 * 12 11 10 15 15 C 1.50696 * 109.47429 * 179.97438 * 12 11 10 16 16 H 1.07999 * 119.99822 * 0.02562 * 15 12 11 17 17 C 1.37876 * 120.00339 * 179.97438 * 15 12 11 18 18 N 1.31514 * 119.99769 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 120.00300 * 180.02562 * 17 15 12 20 20 H 1.48498 * 109.47112 * 90.00199 * 19 17 15 21 21 H 1.48499 * 109.47134 * 210.00310 * 19 17 15 22 22 H 1.48498 * 109.47011 * 329.99931 * 19 17 15 23 23 N 1.28879 * 125.44794 * 180.30898 * 5 2 1 24 24 H 1.09006 * 109.47043 * 299.99843 * 1 2 3 25 25 H 1.08998 * 109.47419 * 59.99663 * 1 2 3 26 26 H 1.08996 * 109.47457 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47875 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47253 * 300.00174 * 3 2 1 29 29 H 1.09001 * 109.47261 * 59.99460 * 3 2 1 30 30 H 1.08999 * 109.47551 * 300.00332 * 4 2 1 31 31 H 1.09004 * 109.46990 * 60.00142 * 4 2 1 32 32 H 1.09005 * 109.47365 * 179.97438 * 4 2 1 33 33 H 1.08997 * 109.46924 * 330.02371 * 9 8 7 34 34 H 1.08995 * 109.46962 * 210.02525 * 9 8 7 35 35 H 1.00901 * 111.00121 * 56.04537 * 10 9 8 36 36 H 1.09004 * 109.47040 * 299.99934 * 11 10 9 37 37 H 1.09000 * 109.47033 * 59.99886 * 11 10 9 38 38 H 1.09002 * 109.47288 * 60.00045 * 13 12 11 39 39 H 1.09001 * 109.46630 * 179.97438 * 13 12 11 40 40 H 1.09000 * 109.47188 * 299.99959 * 13 12 11 41 41 H 1.08996 * 109.46524 * 60.00440 * 14 12 11 42 42 H 1.09001 * 109.46962 * 180.02562 * 14 12 11 43 43 H 1.08992 * 109.47457 * 300.00343 * 14 12 11 44 44 H 0.97000 * 120.00540 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 7 1.2782 -1.2171 2.1091 7 7 2.0399 -1.7373 3.0109 8 6 3.3017 -1.5227 2.6376 9 6 4.5420 -1.9511 3.3787 10 7 4.9445 -3.2897 2.9269 11 6 6.1535 -3.7408 3.6291 12 6 6.5414 -5.1350 3.1326 13 6 5.3964 -6.1116 3.4093 14 6 6.8148 -5.0829 1.6281 15 6 7.7819 -5.5975 3.8524 16 1 8.2469 -4.9609 4.5905 17 6 8.3226 -6.8339 3.5694 18 7 7.7560 -7.6093 2.6709 19 14 9.8599 -7.4075 4.4622 20 1 9.4726 -8.1356 5.6971 21 1 10.6376 -8.3119 3.5776 22 1 10.6917 -6.2310 4.8215 23 7 3.2573 -0.8631 1.5063 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6766 -1.7490 -1.2492 31 1 1.6766 -0.2075 -2.1392 32 1 3.1300 -0.7209 -1.2494 33 1 4.3356 -1.9755 4.4487 34 1 5.3467 -1.2433 3.1800 35 1 5.0791 -3.3086 1.9271 36 1 6.9692 -3.0453 3.4316 37 1 5.9588 -3.7776 4.7009 38 1 4.4994 -5.7769 2.8883 39 1 5.6726 -7.1048 3.0552 40 1 5.2016 -6.1488 4.4811 41 1 7.6303 -4.3871 1.4310 42 1 7.0907 -6.0763 1.2743 43 1 5.9178 -4.7482 1.1071 44 1 8.1366 -8.4790 2.4715 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594943646.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:45 Heat of formation + Delta-G solvation = 117.934316 kcal Electronic energy + Delta-G solvation = -22460.251292 eV Core-core repulsion = 19257.709511 eV Total energy + Delta-G solvation = -3202.541781 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.191 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.22335 -37.92415 -36.96491 -34.36740 -33.27903 -32.15882 -30.63122 -28.03461 -27.95719 -26.57559 -25.53516 -25.16675 -24.50130 -23.30073 -21.63665 -20.66571 -18.47218 -17.21563 -17.14309 -16.00030 -15.37527 -14.83535 -14.61265 -14.57603 -14.35011 -13.90474 -13.60419 -13.29041 -12.91087 -12.82978 -12.60985 -12.44018 -12.26526 -12.24301 -11.90851 -11.84881 -11.77574 -11.41226 -11.09656 -10.99424 -10.78464 -10.72395 -10.61300 -10.58730 -10.15525 -10.10526 -9.96706 -9.35733 -9.08699 -8.60190 -8.26689 -7.77246 -5.88648 -3.99151 1.34780 1.84851 2.33485 3.33721 3.40516 3.43193 3.78905 4.13976 4.17095 4.24335 4.47010 4.64738 4.96428 5.00398 5.03154 5.08252 5.17291 5.23650 5.24666 5.36899 5.52053 5.54700 5.65986 5.69230 5.77169 5.93494 6.01093 6.30424 6.32512 6.38246 6.73053 6.90520 7.09261 7.19305 7.41378 7.48177 7.68481 7.78432 7.85243 7.89831 8.23070 8.36994 8.54536 8.57788 9.02250 9.65769 11.11971 Molecular weight = 281.19amu Principal moments of inertia in cm(-1) A = 0.036618 B = 0.003174 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.463875 B = 8819.230329 C = 8980.836729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.180 3.820 3 C -0.157 4.157 4 C -0.159 4.159 5 N -0.136 5.136 6 N -0.070 5.070 7 N -0.271 5.271 8 C 0.180 3.820 9 C 0.154 3.846 10 N -0.679 5.679 11 C 0.076 3.924 12 C 0.070 3.930 13 C -0.120 4.120 14 C -0.132 4.132 15 C -0.506 4.506 16 H 0.053 0.947 17 C 0.065 3.935 18 N -0.885 5.885 19 Si 0.889 3.111 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.276 1.276 23 N -0.307 5.307 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.340 0.660 36 H 0.018 0.982 37 H 0.062 0.938 38 H 0.019 0.981 39 H 0.074 0.926 40 H 0.019 0.981 41 H 0.020 0.980 42 H 0.083 0.917 43 H 0.009 0.991 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.294 17.147 -8.021 22.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.099 3.901 3 C -0.216 4.216 4 C -0.218 4.218 5 N -0.049 5.049 6 N -0.063 5.063 7 N -0.142 5.142 8 C -0.103 4.103 9 C 0.022 3.978 10 N -0.312 5.312 11 C -0.052 4.052 12 C 0.069 3.931 13 C -0.177 4.177 14 C -0.190 4.190 15 C -0.545 4.545 16 H 0.071 0.929 17 C -0.136 4.136 18 N -0.523 5.523 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.201 1.201 23 N -0.158 5.158 24 H 0.093 0.907 25 H 0.105 0.895 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.071 0.929 35 H 0.160 0.840 36 H 0.036 0.964 37 H 0.080 0.920 38 H 0.038 0.962 39 H 0.092 0.908 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.102 0.898 43 H 0.028 0.972 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.349 16.736 -7.819 22.791 hybrid contribution 2.037 0.130 0.136 2.045 sum -11.313 16.865 -7.683 21.713 Atomic orbital electron populations 1.22071 0.90278 1.04629 1.04016 1.21303 0.96293 0.92605 0.79940 1.22215 1.03321 0.92279 1.03768 1.22233 1.03428 1.01185 0.94916 1.50418 1.01313 1.35197 1.18010 1.78906 1.22279 1.09376 0.95716 1.75864 1.01065 1.17632 1.19662 1.25661 0.95862 0.97300 0.91430 1.20136 0.87788 0.91658 0.98248 1.60609 1.38572 1.21176 1.10864 1.22213 0.86837 0.98421 0.97699 1.18093 0.93990 0.88549 0.92478 1.21645 0.95878 1.02235 0.97977 1.21834 0.96232 1.02755 0.98163 1.21101 1.09918 1.01570 1.21932 0.92874 1.24886 0.96984 0.96611 0.95103 1.69838 1.39789 1.10169 1.32550 0.86649 0.83419 0.78579 0.79621 1.20781 1.21382 1.20090 1.74587 1.03152 1.20905 1.17156 0.90718 0.89459 0.90560 0.90432 0.89366 0.91545 0.91269 0.89384 0.90351 0.88262 0.92946 0.84037 0.96388 0.91988 0.96173 0.90759 0.96133 0.96128 0.89803 0.97228 0.93203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 7.91 37.15 0.29 -0.70 16 2 C 0.18 1.52 1.30 -131.82 -0.17 1.35 16 3 C -0.16 -1.04 8.66 37.15 0.32 -0.72 16 4 C -0.16 -1.19 8.67 37.16 0.32 -0.87 16 5 N -0.14 -1.78 3.73 0.48 0.00 -1.78 16 6 N -0.07 -1.07 12.24 60.35 0.74 -0.33 16 7 N -0.27 -4.70 12.50 32.45 0.41 -4.30 16 8 C 0.18 2.94 7.88 -156.63 -1.23 1.71 16 9 C 0.15 2.44 6.31 -4.97 -0.03 2.41 16 10 N -0.68 -12.70 5.70 -115.06 -0.66 -13.35 16 11 C 0.08 1.59 4.59 -3.82 -0.02 1.57 16 12 C 0.07 1.70 0.57 -155.66 -0.09 1.61 16 13 C -0.12 -2.99 8.09 37.16 0.30 -2.69 16 14 C -0.13 -3.16 7.92 37.16 0.29 -2.86 16 15 C -0.51 -13.66 8.01 -34.44 -0.28 -13.94 16 16 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 17 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 18 N -0.88 -24.70 9.35 55.43 0.52 -24.19 16 19 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 N -0.31 -4.57 11.83 32.47 0.38 -4.19 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.34 6.45 6.76 -39.29 -0.27 6.19 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.02 0.47 7.60 -51.93 -0.39 0.07 16 39 H 0.07 2.03 6.07 -51.93 -0.32 1.71 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.08 2.22 6.07 -51.93 -0.32 1.91 16 43 H 0.01 0.20 6.57 -51.93 -0.34 -0.15 16 44 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 352.51 15.07 5.31 5.31 Total: -1.00 -30.38 352.51 -6.21 -36.59 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -7.51 Total: 1.50 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -0.38 Total: -11.45 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 1.39 Total: -48.13 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.38 -6.21 -36.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594943646.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.525 kcal (2) G-P(sol) polarization free energy of solvation -30.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds