Wall clock time and date at job start Tue Mar 31 2020 05:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31512 * 120.00020 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99603 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.47195 * 90.00782 * 8 6 4 10 10 H 1.48502 * 109.46875 * 210.00223 * 8 6 4 11 11 H 1.48493 * 109.47388 * 330.00132 * 8 6 4 12 12 N 1.46899 * 109.47163 * 240.00322 * 2 1 3 13 13 C 1.46901 * 110.99839 * 183.94913 * 12 2 1 14 14 C 1.46904 * 111.00029 * 60.00166 * 12 2 1 15 15 C 1.52998 * 109.46985 * 190.00116 * 14 12 2 16 16 C 1.50703 * 109.46876 * 179.97438 * 15 14 12 17 17 N 1.33311 * 126.55311 * 90.02523 * 16 15 14 18 18 N 1.28995 * 107.35853 * 179.97438 * 17 16 15 19 19 N 1.28781 * 108.72115 * 0.02562 * 18 17 16 20 20 C 1.46505 * 125.44582 * 180.02562 * 19 18 17 21 21 C 1.52999 * 109.47042 * 359.97169 * 20 19 18 22 22 C 1.52995 * 109.47170 * 119.97200 * 20 19 18 23 23 C 1.52998 * 109.47073 * 239.97546 * 20 19 18 24 24 N 1.28877 * 109.10404 * 359.73018 * 19 18 17 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 0.97000 * 119.99684 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.46828 * 60.00565 * 13 12 2 30 30 H 1.09000 * 109.47045 * 179.97438 * 13 12 2 31 31 H 1.08999 * 109.47395 * 300.00120 * 13 12 2 32 32 H 1.09000 * 109.46884 * 309.99967 * 14 12 2 33 33 H 1.09001 * 109.47504 * 69.99630 * 14 12 2 34 34 H 1.08999 * 109.46892 * 299.99213 * 15 14 12 35 35 H 1.09001 * 109.47396 * 59.99448 * 15 14 12 36 36 H 1.08999 * 109.47073 * 60.00385 * 21 20 19 37 37 H 1.09006 * 109.47120 * 180.02562 * 21 20 19 38 38 H 1.09003 * 109.47324 * 299.99908 * 21 20 19 39 39 H 1.09001 * 109.47278 * 60.00045 * 22 20 19 40 40 H 1.09006 * 109.47106 * 180.02562 * 22 20 19 41 41 H 1.08999 * 109.47412 * 299.99901 * 22 20 19 42 42 H 1.08994 * 109.47383 * 59.99761 * 23 20 19 43 43 H 1.08999 * 109.47452 * 180.02562 * 23 20 19 44 44 H 1.09001 * 109.46823 * 299.99617 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1373 -0.8598 3.5565 8 14 0.6257 1.2796 2.6541 9 1 -0.8021 0.8742 2.6994 10 1 0.9770 1.9951 3.9071 11 1 0.8489 2.1772 1.4924 12 7 2.0197 -0.6924 -1.1995 13 6 3.4852 -0.7943 -1.1871 14 6 1.5487 -0.0262 -2.4211 15 6 1.8628 -0.9041 -3.6342 16 6 1.3790 -0.2209 -4.8873 17 7 2.0745 0.6216 -5.6513 18 7 1.3073 0.9823 -6.6235 19 7 0.1678 0.3974 -6.4898 20 6 -0.9754 0.5472 -7.3936 21 6 -0.6082 1.5091 -8.5252 22 6 -1.3422 -0.8165 -7.9823 23 6 -2.1697 1.1055 -6.6171 24 7 0.1961 -0.3457 -5.4371 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.9032 -0.5282 4.4375 29 1 3.8030 -1.3530 -0.3068 30 1 3.8210 -1.3114 -2.0859 31 1 3.9187 0.2053 -1.1591 32 1 0.4723 0.1326 -2.3564 33 1 2.0519 0.9348 -2.5280 34 1 2.9392 -1.0628 -3.6989 35 1 1.3596 -1.8651 -3.5273 36 1 0.2426 1.1114 -9.0785 37 1 -1.4590 1.6210 -9.1975 38 1 -0.3469 2.4807 -8.1058 39 1 -1.6038 -1.5019 -7.1761 40 1 -2.1926 -0.7050 -8.6552 41 1 -0.4914 -1.2142 -8.5355 42 1 -1.9083 2.0769 -6.1977 43 1 -3.0204 1.2165 -7.2894 44 1 -2.4313 0.4201 -5.8109 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595343353.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:30 Heat of formation + Delta-G solvation = 134.545432 kcal Electronic energy + Delta-G solvation = -22513.188058 eV Core-core repulsion = 19311.366589 eV Total energy + Delta-G solvation = -3201.821469 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.191 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.31549 -38.03535 -37.41754 -33.92252 -33.33567 -32.42984 -30.57901 -29.30709 -28.01083 -27.93435 -25.96945 -24.60927 -24.36486 -22.99605 -21.14353 -20.65881 -19.37195 -17.27048 -17.19164 -16.76023 -15.46178 -15.09712 -14.68714 -14.60601 -14.47768 -13.93259 -13.54246 -13.29121 -13.18760 -13.06967 -12.93991 -12.76987 -12.53952 -12.31855 -12.28458 -11.99830 -11.95315 -11.73385 -11.54473 -11.35097 -10.95532 -10.86586 -10.82289 -10.66687 -10.51142 -10.34500 -10.08903 -9.81106 -9.46325 -8.99151 -8.54861 -7.36398 -6.05465 -4.03859 1.26823 1.78187 2.25866 3.27682 3.37997 3.39830 3.72982 4.08381 4.09314 4.18672 4.41179 4.59514 4.88698 4.95934 4.96483 5.02388 5.12850 5.17092 5.19167 5.26778 5.41523 5.48083 5.51273 5.59007 5.62598 5.71559 5.88799 5.94194 6.09979 6.19040 6.25893 6.28729 6.39450 6.42950 6.51896 6.62220 6.82555 6.95064 7.29715 7.60060 7.93800 8.09211 8.45451 8.66359 9.01211 9.56670 11.07267 Molecular weight = 281.19amu Principal moments of inertia in cm(-1) A = 0.028471 B = 0.003544 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.210719 B = 7898.988098 C = 8403.174668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.182 3.818 3 H -0.002 1.002 4 C -0.505 4.505 5 H 0.085 0.915 6 C 0.070 3.930 7 N -0.899 5.899 8 Si 0.885 3.115 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.270 1.270 12 N -0.525 5.525 13 C 0.033 3.967 14 C 0.056 3.944 15 C -0.020 4.020 16 C 0.178 3.822 17 N -0.287 5.287 18 N -0.069 5.069 19 N -0.136 5.136 20 C 0.179 3.821 21 C -0.152 4.152 22 C -0.158 4.158 23 C -0.159 4.159 24 N -0.304 5.304 25 H 0.062 0.938 26 H 0.041 0.959 27 H 0.028 0.972 28 H 0.264 0.736 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.015 0.985 32 H 0.076 0.924 33 H 0.027 0.973 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.199 2.839 -24.443 25.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.075 3.925 3 H 0.015 0.985 4 C -0.543 4.543 5 H 0.103 0.897 6 C -0.131 4.131 7 N -0.538 5.538 8 Si 0.716 3.284 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.195 1.195 12 N -0.250 5.250 13 C -0.115 4.115 14 C -0.074 4.074 15 C -0.061 4.061 16 C -0.104 4.104 17 N -0.158 5.158 18 N -0.062 5.062 19 N -0.050 5.050 20 C 0.098 3.902 21 C -0.210 4.210 22 C -0.216 4.216 23 C -0.218 4.218 24 N -0.154 5.154 25 H 0.081 0.919 26 H 0.059 0.941 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.033 0.967 32 H 0.094 0.906 33 H 0.046 0.954 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.107 0.893 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.385 2.755 -24.796 26.320 hybrid contribution -0.363 1.402 0.647 1.586 sum -8.749 4.157 -24.149 26.020 Atomic orbital electron populations 1.22220 0.98610 1.01411 0.98120 1.19688 0.91419 0.92664 0.88727 0.98473 1.20990 1.31889 1.13587 0.87832 0.89743 1.24911 0.95823 0.96560 0.95825 1.69876 1.45781 1.40268 0.97863 0.86897 0.80806 0.83916 0.76809 1.20528 1.22482 1.19511 1.61937 1.10188 1.51838 1.00988 1.22321 0.87766 0.99590 1.01872 1.22058 1.01134 0.94505 0.89733 1.20033 1.02237 0.98569 0.85240 1.25783 0.87001 0.97721 0.99933 1.75853 1.24774 1.13529 1.01610 1.78876 0.91308 1.17328 1.18686 1.50461 1.11774 1.26056 1.16684 1.21320 0.81688 0.99033 0.88122 1.22077 1.03428 0.99115 0.96384 1.22222 1.03013 0.94182 1.02214 1.22233 0.95815 1.02331 1.01395 1.74643 1.23334 1.17000 1.00428 0.91895 0.94073 0.95321 0.92629 0.89824 0.93208 0.96679 0.90585 0.95442 0.88704 0.88180 0.90685 0.89409 0.90654 0.90293 0.89327 0.91511 0.91422 0.89312 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 8.47 37.16 0.31 -2.96 16 2 C 0.18 4.39 1.65 -68.86 -0.11 4.28 16 3 H 0.00 -0.06 7.20 -51.93 -0.37 -0.43 16 4 C -0.50 -14.12 8.51 -34.44 -0.29 -14.41 16 5 H 0.08 2.54 6.64 -52.48 -0.35 2.19 16 6 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 7 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 8 Si 0.88 22.17 24.37 -169.99 -4.14 18.03 16 9 H -0.28 -6.78 6.87 56.52 0.39 -6.39 16 10 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 11 H -0.27 -6.58 6.53 56.52 0.37 -6.21 16 12 N -0.53 -10.92 4.62 -236.28 -1.09 -12.01 16 13 C 0.03 0.63 9.05 60.06 0.54 1.18 16 14 C 0.06 0.99 4.76 -3.82 -0.02 0.97 16 15 C -0.02 -0.30 5.77 -27.88 -0.16 -0.46 16 16 C 0.18 2.76 7.62 -156.63 -1.19 1.57 16 17 N -0.29 -4.66 12.50 32.44 0.41 -4.26 16 18 N -0.07 -1.01 12.24 60.35 0.74 -0.27 16 19 N -0.14 -1.70 3.73 0.48 0.00 -1.70 16 20 C 0.18 1.43 1.30 -131.82 -0.17 1.26 16 21 C -0.15 -0.92 7.91 37.16 0.29 -0.62 16 22 C -0.16 -0.99 8.66 37.16 0.32 -0.67 16 23 C -0.16 -1.10 8.67 37.16 0.32 -0.78 16 24 N -0.30 -4.37 11.83 32.46 0.38 -3.99 16 25 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 26 H 0.04 0.95 3.27 -51.93 -0.17 0.78 16 27 H 0.03 0.56 6.20 -51.93 -0.32 0.24 16 28 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.08 1.78 6.23 -51.93 -0.32 1.46 16 30 H 0.05 0.80 6.30 -51.93 -0.33 0.47 16 31 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 1.37 5.83 -51.93 -0.30 1.07 16 33 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 34 H 0.09 1.35 6.47 -51.93 -0.34 1.02 16 35 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 343.84 15.07 5.18 5.18 Total: -1.00 -32.52 343.84 -5.18 -37.70 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -7.18 Total: -3.31 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -0.25 Total: -8.72 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 1.21 Total: -48.89 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.14 Total: 18.03 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.52 -5.18 -37.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595343353.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.250 kcal (2) G-P(sol) polarization free energy of solvation -32.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds