Wall clock time and date at job start Tue Mar 31 2020 05:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31512 * 120.00020 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99603 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.47195 * 90.00782 * 8 6 4 10 10 H 1.48502 * 109.46875 * 210.00223 * 8 6 4 11 11 H 1.48493 * 109.47388 * 330.00132 * 8 6 4 12 12 N 1.46899 * 109.47163 * 240.00322 * 2 1 3 13 13 C 1.46901 * 110.99839 * 183.94913 * 12 2 1 14 14 C 1.46904 * 111.00029 * 60.00166 * 12 2 1 15 15 C 1.52998 * 109.46985 * 190.00116 * 14 12 2 16 16 C 1.50703 * 109.46876 * 179.97438 * 15 14 12 17 17 N 1.33311 * 126.55311 * 90.02523 * 16 15 14 18 18 N 1.28995 * 107.35853 * 179.97438 * 17 16 15 19 19 N 1.28781 * 108.72115 * 0.02562 * 18 17 16 20 20 C 1.46505 * 125.44582 * 180.02562 * 19 18 17 21 21 C 1.52999 * 109.47042 * 359.97169 * 20 19 18 22 22 C 1.52995 * 109.47170 * 119.97200 * 20 19 18 23 23 C 1.52998 * 109.47073 * 239.97546 * 20 19 18 24 24 N 1.28877 * 109.10404 * 359.73018 * 19 18 17 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 0.97000 * 119.99684 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.46828 * 60.00565 * 13 12 2 30 30 H 1.09000 * 109.47045 * 179.97438 * 13 12 2 31 31 H 1.08999 * 109.47395 * 300.00120 * 13 12 2 32 32 H 1.09000 * 109.46884 * 309.99967 * 14 12 2 33 33 H 1.09001 * 109.47504 * 69.99630 * 14 12 2 34 34 H 1.08999 * 109.46892 * 299.99213 * 15 14 12 35 35 H 1.09001 * 109.47396 * 59.99448 * 15 14 12 36 36 H 1.08999 * 109.47073 * 60.00385 * 21 20 19 37 37 H 1.09006 * 109.47120 * 180.02562 * 21 20 19 38 38 H 1.09003 * 109.47324 * 299.99908 * 21 20 19 39 39 H 1.09001 * 109.47278 * 60.00045 * 22 20 19 40 40 H 1.09006 * 109.47106 * 180.02562 * 22 20 19 41 41 H 1.08999 * 109.47412 * 299.99901 * 22 20 19 42 42 H 1.08994 * 109.47383 * 59.99761 * 23 20 19 43 43 H 1.08999 * 109.47452 * 180.02562 * 23 20 19 44 44 H 1.09001 * 109.46823 * 299.99617 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1373 -0.8598 3.5565 8 14 0.6257 1.2796 2.6541 9 1 -0.8021 0.8742 2.6994 10 1 0.9770 1.9951 3.9071 11 1 0.8489 2.1772 1.4924 12 7 2.0197 -0.6924 -1.1995 13 6 3.4852 -0.7943 -1.1871 14 6 1.5487 -0.0262 -2.4211 15 6 1.8628 -0.9041 -3.6342 16 6 1.3790 -0.2209 -4.8873 17 7 2.0745 0.6216 -5.6513 18 7 1.3073 0.9823 -6.6235 19 7 0.1678 0.3974 -6.4898 20 6 -0.9754 0.5472 -7.3936 21 6 -0.6082 1.5091 -8.5252 22 6 -1.3422 -0.8165 -7.9823 23 6 -2.1697 1.1055 -6.6171 24 7 0.1961 -0.3457 -5.4371 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.9032 -0.5282 4.4375 29 1 3.8030 -1.3530 -0.3068 30 1 3.8210 -1.3114 -2.0859 31 1 3.9187 0.2053 -1.1591 32 1 0.4723 0.1326 -2.3564 33 1 2.0519 0.9348 -2.5280 34 1 2.9392 -1.0628 -3.6989 35 1 1.3596 -1.8651 -3.5273 36 1 0.2426 1.1114 -9.0785 37 1 -1.4590 1.6210 -9.1975 38 1 -0.3469 2.4807 -8.1058 39 1 -1.6038 -1.5019 -7.1761 40 1 -2.1926 -0.7050 -8.6552 41 1 -0.4914 -1.2142 -8.5355 42 1 -1.9083 2.0769 -6.1977 43 1 -3.0204 1.2165 -7.2894 44 1 -2.4313 0.4201 -5.8109 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595343353.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:29 Heat of formation + Delta-G solvation = 111.176911 kcal Electronic energy + Delta-G solvation = -22514.201393 eV Core-core repulsion = 19311.366589 eV Total energy + Delta-G solvation = -3202.834804 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.191 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.38484 -39.26482 -38.55313 -35.43639 -34.47946 -34.07208 -32.27531 -30.71875 -28.51976 -28.50400 -27.67536 -26.19089 -25.56743 -24.44110 -22.48443 -21.54017 -21.12940 -18.87618 -18.23051 -17.99595 -17.20064 -16.48289 -16.23518 -15.33766 -15.29406 -15.22782 -14.98452 -14.82444 -14.66628 -14.24092 -14.09241 -13.81048 -13.53701 -13.39500 -13.21695 -13.00048 -12.88961 -12.83742 -12.69992 -12.53960 -12.49832 -12.37576 -12.17015 -12.06031 -11.94635 -11.83539 -11.68858 -11.44706 -11.04722 -10.90974 -10.72513 -9.06440 -8.27574 -6.30282 0.21551 0.96701 1.08520 1.29130 1.34527 1.43904 2.31585 2.74372 3.05862 3.13632 3.39765 3.53447 3.62311 3.69249 4.06524 4.19098 4.34501 4.45829 4.46343 4.49216 4.52771 4.53619 4.61525 4.63337 4.65990 4.72826 4.73056 4.78431 4.83215 4.88117 4.89017 5.02197 5.06058 5.11202 5.12445 5.23134 5.28497 5.37112 5.43485 5.63414 6.00578 6.33997 6.65951 6.76708 7.34324 7.35551 8.88542 Molecular weight = 281.19amu Principal moments of inertia in cm(-1) A = 0.028471 B = 0.003544 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.210719 B = 7898.988098 C = 8403.174668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.184 3.816 3 H -0.014 1.014 4 C -0.506 4.506 5 H 0.049 0.951 6 C 0.015 3.985 7 N -0.946 5.946 8 Si 0.944 3.056 9 H -0.263 1.263 10 H -0.298 1.298 11 H -0.258 1.258 12 N -0.532 5.532 13 C 0.036 3.964 14 C 0.063 3.937 15 C -0.009 4.009 16 C 0.167 3.833 17 N -0.315 5.315 18 N -0.078 5.078 19 N -0.121 5.121 20 C 0.162 3.838 21 C -0.149 4.149 22 C -0.153 4.153 23 C -0.156 4.156 24 N -0.309 5.309 25 H 0.060 0.940 26 H 0.034 0.966 27 H 0.058 0.942 28 H 0.266 0.734 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.012 0.988 32 H 0.076 0.924 33 H 0.021 0.979 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.067 0.933 37 H 0.124 0.876 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.125 0.875 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.126 0.874 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.369 3.804 -27.067 29.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.076 3.924 3 H 0.003 0.997 4 C -0.544 4.544 5 H 0.067 0.933 6 C -0.182 4.182 7 N -0.587 5.587 8 Si 0.772 3.228 9 H -0.189 1.189 10 H -0.225 1.225 11 H -0.182 1.182 12 N -0.256 5.256 13 C -0.112 4.112 14 C -0.066 4.066 15 C -0.049 4.049 16 C -0.116 4.116 17 N -0.185 5.185 18 N -0.070 5.070 19 N -0.037 5.037 20 C 0.083 3.917 21 C -0.207 4.207 22 C -0.212 4.212 23 C -0.214 4.214 24 N -0.160 5.160 25 H 0.079 0.921 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.030 0.970 32 H 0.094 0.906 33 H 0.040 0.960 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.086 0.914 37 H 0.143 0.857 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.143 0.857 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.144 0.856 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.554 3.723 -27.457 29.650 hybrid contribution 0.302 1.045 1.331 1.719 sum -10.252 4.768 -26.126 28.467 Atomic orbital electron populations 1.22116 0.96872 1.01699 0.99216 1.19534 0.92749 0.91538 0.88609 0.99658 1.21226 1.30907 1.12512 0.89746 0.93254 1.25705 0.97355 0.99700 0.95458 1.70017 1.47757 1.42377 0.98510 0.85923 0.79630 0.80278 0.76976 1.18888 1.22535 1.18215 1.61874 1.10877 1.51812 1.01070 1.22292 0.87172 0.99414 1.02337 1.22013 1.00821 0.94555 0.89231 1.19874 1.02887 0.98153 0.84027 1.25746 0.87417 0.98151 1.00240 1.75812 1.25862 1.14402 1.02404 1.78807 0.91972 1.17725 1.18460 1.51041 1.12124 1.24307 1.16197 1.22005 0.80752 1.00757 0.88225 1.22133 1.04765 0.97758 0.95997 1.22254 1.04114 0.92610 1.02201 1.22270 0.96428 1.01054 1.01680 1.74609 1.22907 1.17400 1.01034 0.92078 0.94727 0.92360 0.92511 0.92619 0.89643 0.96965 0.90576 0.96049 0.87898 0.87397 0.91398 0.85715 0.91753 0.91598 0.85681 0.92170 0.92585 0.85603 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.08 8.47 71.98 0.61 -5.47 16 2 C 0.18 8.76 1.65 44.17 0.07 8.84 16 3 H -0.01 -0.70 7.20 -2.39 -0.02 -0.72 16 4 C -0.51 -28.87 8.51 25.60 0.22 -28.65 16 5 H 0.05 3.10 6.64 -2.91 -0.02 3.08 16 6 C 0.02 0.89 5.45 84.65 0.46 1.35 16 7 N -0.95 -59.21 13.96 21.45 0.30 -58.91 16 8 Si 0.94 45.49 24.37 68.60 1.67 47.16 16 9 H -0.26 -11.96 6.87 99.48 0.68 -11.27 16 10 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 11 H -0.26 -11.81 6.53 99.48 0.65 -11.16 16 12 N -0.53 -21.78 4.62 -901.45 -4.17 -25.95 16 13 C 0.04 1.38 9.05 127.69 1.16 2.54 16 14 C 0.06 2.16 4.76 86.30 0.41 2.57 16 15 C -0.01 -0.25 5.77 29.85 0.17 -0.08 16 16 C 0.17 4.98 7.62 138.55 1.06 6.04 16 17 N -0.31 -9.98 12.50 -51.26 -0.64 -10.62 16 18 N -0.08 -2.17 12.24 37.02 0.45 -1.72 16 19 N -0.12 -2.85 3.73 -152.40 -0.57 -3.41 16 20 C 0.16 2.19 1.30 3.60 0.00 2.19 16 21 C -0.15 -1.39 7.91 71.98 0.57 -0.83 16 22 C -0.15 -1.50 8.66 71.98 0.62 -0.88 16 23 C -0.16 -1.73 8.67 71.98 0.62 -1.11 16 24 N -0.31 -8.46 11.83 -51.20 -0.61 -9.06 16 25 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 26 H 0.03 1.52 3.27 -2.39 -0.01 1.51 16 27 H 0.06 2.13 6.20 -2.39 -0.01 2.12 16 28 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 29 H 0.05 2.45 6.23 -2.39 -0.01 2.43 16 30 H 0.09 2.65 6.30 -2.39 -0.02 2.63 16 31 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.08 2.59 5.83 -2.39 -0.01 2.57 16 33 H 0.02 0.76 8.12 -2.39 -0.02 0.74 16 34 H 0.10 2.75 6.47 -2.39 -0.02 2.74 16 35 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.12 0.24 8.14 -2.38 -0.02 0.22 16 38 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 40 H 0.12 0.31 8.14 -2.38 -0.02 0.29 16 41 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -71.84 343.84 3.32 -68.52 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 0.90 Total: 7.49 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 5.98 Total: -13.49 kcal Atomic # 7 Polarization: -104.44 SS G_CDS: -5.23 Total: -109.67 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.67 Total: 47.16 kcal Total: -71.84 3.32 -68.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595343353.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.697 kcal (2) G-P(sol) polarization free energy of solvation -71.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds