Wall clock time and date at job start Tue Mar 31 2020 05:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47256 * 90.00491 * 8 6 4 10 10 H 1.48506 * 109.46930 * 210.00332 * 8 6 4 11 11 H 1.48499 * 109.47104 * 330.00193 * 8 6 4 12 12 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 13 13 C 1.46894 * 111.00118 * 176.04276 * 12 2 1 14 14 C 1.46902 * 110.99980 * 300.00251 * 12 2 1 15 15 C 1.53002 * 109.46832 * 170.00051 * 14 12 2 16 16 C 1.50701 * 109.47021 * 179.97438 * 15 14 12 17 17 N 1.33322 * 126.54442 * 90.02240 * 16 15 14 18 18 N 1.29005 * 107.34733 * 180.02562 * 17 16 15 19 19 N 1.28777 * 108.72682 * 0.02562 * 18 17 16 20 20 C 1.46509 * 125.44407 * 180.02562 * 19 18 17 21 21 C 1.52998 * 109.47198 * 359.97438 * 20 19 18 22 22 C 1.53002 * 109.46616 * 119.97716 * 20 19 18 23 23 C 1.52998 * 109.46951 * 239.97508 * 20 19 18 24 24 N 1.28880 * 109.10358 * 359.72960 * 19 18 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 27 27 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 28 28 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.46987 * 60.00336 * 13 12 2 30 30 H 1.09004 * 109.47461 * 180.02562 * 13 12 2 31 31 H 1.08999 * 109.47654 * 300.00445 * 13 12 2 32 32 H 1.08997 * 109.46547 * 289.99793 * 14 12 2 33 33 H 1.09000 * 109.47275 * 50.00112 * 14 12 2 34 34 H 1.08997 * 109.47060 * 299.99724 * 15 14 12 35 35 H 1.08999 * 109.47436 * 59.99529 * 15 14 12 36 36 H 1.08998 * 109.47066 * 59.99539 * 21 20 19 37 37 H 1.08997 * 109.46756 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.46954 * 299.99257 * 21 20 19 39 39 H 1.09007 * 109.46883 * 60.00184 * 22 20 19 40 40 H 1.08997 * 109.46929 * 179.97438 * 22 20 19 41 41 H 1.08998 * 109.47412 * 300.00316 * 22 20 19 42 42 H 1.08999 * 109.47344 * 60.00655 * 23 20 19 43 43 H 1.09003 * 109.46786 * 180.02562 * 23 20 19 44 44 H 1.09001 * 109.47433 * 299.99803 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3426 -2.1616 -4.4119 10 1 2.4864 -0.1413 -5.1123 11 1 3.6292 -1.7582 -3.7122 12 7 2.0197 -0.6925 1.1994 13 6 3.4850 -0.7946 1.1870 14 6 1.5486 -0.0264 2.4211 15 6 1.8627 -0.9044 3.6341 16 6 1.3801 -0.2208 4.8874 17 7 0.1752 -0.3435 5.4449 18 7 0.1613 0.4007 6.4985 19 7 1.3072 0.9770 6.6128 20 6 1.6898 1.9028 7.6819 21 6 0.5153 2.0820 8.6459 22 6 2.8911 1.3362 8.4414 23 6 2.0626 3.2568 7.0749 24 7 2.0657 0.6043 5.6398 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3635 0.5138 -0.8899 28 1 0.7092 1.1618 -3.4843 29 1 3.9186 0.2051 1.1591 30 1 3.8209 -1.3117 2.0858 31 1 3.8029 -1.3532 0.3066 32 1 2.0519 0.9345 2.5280 33 1 0.4722 0.1323 2.3564 34 1 1.3595 -1.8653 3.5271 35 1 2.9391 -1.0632 3.6988 36 1 0.2497 1.1174 9.0783 37 1 0.8001 2.7704 9.4415 38 1 -0.3405 2.4857 8.1048 39 1 3.7279 1.2086 7.7545 40 1 3.1761 2.0252 9.2365 41 1 2.6256 0.3715 8.8738 42 1 1.2067 3.6604 6.5339 43 1 2.3476 3.9454 7.8703 44 1 2.8993 3.1292 6.3881 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595343359.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:32 Heat of formation + Delta-G solvation = 126.042300 kcal Electronic energy + Delta-G solvation = -22417.445515 eV Core-core repulsion = 19215.255322 eV Total energy + Delta-G solvation = -3202.190192 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.191 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.24083 -37.96150 -37.19961 -33.83771 -33.26344 -32.45039 -30.04193 -28.81947 -27.97642 -27.89083 -25.84396 -24.54960 -24.30468 -22.84630 -21.07677 -20.61507 -19.27587 -17.20893 -17.12571 -16.22914 -15.53752 -14.77847 -14.60697 -14.44952 -14.40683 -13.89101 -13.55256 -13.35627 -13.00649 -12.92384 -12.80668 -12.66910 -12.28232 -12.23358 -12.01708 -11.91499 -11.77109 -11.48372 -11.26776 -11.05453 -10.88937 -10.79367 -10.76923 -10.62551 -10.27505 -10.08377 -10.04823 -9.95807 -9.57728 -8.82639 -8.38425 -7.16399 -5.97745 -4.02210 1.33586 1.84255 2.34211 3.33597 3.39746 3.42720 3.78582 4.12533 4.17442 4.22790 4.44974 4.66218 4.97162 4.99288 5.06159 5.14169 5.16259 5.21438 5.22975 5.34629 5.51182 5.53043 5.60517 5.65771 5.73539 5.76992 5.96923 6.03662 6.20736 6.30804 6.34878 6.46678 6.53075 6.81767 6.91941 7.11759 7.20249 7.56108 7.76123 7.86338 8.24066 8.35416 8.52966 8.62475 9.04222 9.62621 11.09225 Molecular weight = 281.19amu Principal moments of inertia in cm(-1) A = 0.036627 B = 0.003129 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.279933 B = 8946.706907 C = 9020.819010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.213 3.787 3 H -0.002 1.002 4 C -0.503 4.503 5 H 0.064 0.936 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.535 5.535 13 C 0.034 3.966 14 C 0.060 3.940 15 C -0.020 4.020 16 C 0.180 3.820 17 N -0.283 5.283 18 N -0.069 5.069 19 N -0.137 5.137 20 C 0.180 3.820 21 C -0.152 4.152 22 C -0.157 4.157 23 C -0.159 4.159 24 N -0.308 5.308 25 H 0.036 0.964 26 H 0.008 0.992 27 H 0.085 0.915 28 H 0.260 0.740 29 H 0.012 0.988 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.022 0.978 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.258 3.807 22.556 23.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.107 3.893 3 H 0.015 0.985 4 C -0.541 4.541 5 H 0.083 0.917 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.260 5.260 13 C -0.114 4.114 14 C -0.070 4.070 15 C -0.061 4.061 16 C -0.103 4.103 17 N -0.154 5.154 18 N -0.062 5.062 19 N -0.051 5.051 20 C 0.099 3.901 21 C -0.210 4.210 22 C -0.216 4.216 23 C -0.218 4.218 24 N -0.158 5.158 25 H 0.055 0.945 26 H 0.027 0.973 27 H 0.103 0.897 28 H 0.070 0.930 29 H 0.030 0.970 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.041 0.959 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.106 0.894 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.574 3.639 22.916 23.346 hybrid contribution 0.909 0.364 -1.229 1.571 sum 3.483 4.002 21.688 22.327 Atomic orbital electron populations 1.21862 0.97685 0.99807 0.99852 1.19243 0.92366 0.91941 0.85720 0.98485 1.21162 1.30995 1.12254 0.89708 0.91750 1.24940 0.95247 0.95077 0.99035 1.69899 1.37020 1.23040 1.23372 0.86515 0.79212 0.79280 0.82481 1.20654 1.21409 1.19927 1.62110 1.09320 1.52658 1.01932 1.22267 0.88785 0.99185 1.01162 1.22005 1.01487 0.93998 0.89551 1.20062 1.01823 0.98813 0.85422 1.25802 0.88147 0.96824 0.99479 1.75880 1.19736 1.17016 1.02770 1.78881 1.06619 1.06218 1.14489 1.50436 1.06583 1.29894 1.18145 1.21304 0.97604 0.87585 0.83654 1.22072 0.96479 1.04081 0.98361 1.22217 0.96475 1.02123 1.00772 1.22231 1.03567 0.93491 1.02467 1.74615 1.23929 1.16758 1.00538 0.94490 0.97310 0.89680 0.93019 0.96994 0.93657 0.90510 0.95946 0.90260 0.87989 0.89297 0.90691 0.89452 0.90597 0.90400 0.89366 0.91516 0.91357 0.89355 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 8.76 37.16 0.33 -3.05 16 2 C 0.21 5.49 2.06 -68.87 -0.14 5.35 16 3 H 0.00 -0.07 8.14 -51.93 -0.42 -0.49 16 4 C -0.50 -13.85 7.93 -34.44 -0.27 -14.13 16 5 H 0.06 1.75 6.39 -52.49 -0.34 1.42 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.80 11.32 55.43 0.63 -25.18 16 8 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.54 -11.69 4.62 -236.29 -1.09 -12.78 16 13 C 0.03 0.68 9.05 60.06 0.54 1.22 16 14 C 0.06 1.14 4.76 -3.82 -0.02 1.12 16 15 C -0.02 -0.33 5.77 -27.88 -0.16 -0.49 16 16 C 0.18 2.94 7.62 -156.63 -1.19 1.75 16 17 N -0.28 -4.85 12.50 32.45 0.41 -4.45 16 18 N -0.07 -1.05 12.24 60.35 0.74 -0.31 16 19 N -0.14 -1.79 3.73 0.48 0.00 -1.79 16 20 C 0.18 1.52 1.30 -131.82 -0.17 1.34 16 21 C -0.15 -0.98 7.91 37.16 0.29 -0.69 16 22 C -0.16 -1.04 8.66 37.16 0.32 -0.72 16 23 C -0.16 -1.17 8.67 37.16 0.32 -0.85 16 24 N -0.31 -4.63 11.83 32.47 0.38 -4.24 16 25 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.01 0.19 6.20 -51.93 -0.32 -0.13 16 27 H 0.08 2.33 6.07 -51.93 -0.32 2.02 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.04 0.74 6.30 -51.93 -0.33 0.41 16 31 H 0.08 1.60 6.23 -51.93 -0.32 1.27 16 32 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 33 H 0.08 1.61 5.83 -51.93 -0.30 1.31 16 34 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.09 1.31 6.47 -51.93 -0.34 0.97 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 40 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 350.66 15.07 5.28 5.28 Total: -1.00 -31.49 350.66 -6.23 -37.72 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -7.31 Total: -3.06 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -0.25 Total: -7.62 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: 1.07 Total: -48.75 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.49 -6.23 -37.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595343359.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.766 kcal (2) G-P(sol) polarization free energy of solvation -31.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds