Wall clock time and date at job start Tue Mar 31 2020 05:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47256 * 90.00491 * 8 6 4 10 10 H 1.48506 * 109.46930 * 210.00332 * 8 6 4 11 11 H 1.48499 * 109.47104 * 330.00193 * 8 6 4 12 12 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 13 13 C 1.46894 * 111.00118 * 176.04276 * 12 2 1 14 14 C 1.46902 * 110.99980 * 300.00251 * 12 2 1 15 15 C 1.53002 * 109.46832 * 170.00051 * 14 12 2 16 16 C 1.50701 * 109.47021 * 179.97438 * 15 14 12 17 17 N 1.33322 * 126.54442 * 90.02240 * 16 15 14 18 18 N 1.29005 * 107.34733 * 180.02562 * 17 16 15 19 19 N 1.28777 * 108.72682 * 0.02562 * 18 17 16 20 20 C 1.46509 * 125.44407 * 180.02562 * 19 18 17 21 21 C 1.52998 * 109.47198 * 359.97438 * 20 19 18 22 22 C 1.53002 * 109.46616 * 119.97716 * 20 19 18 23 23 C 1.52998 * 109.46951 * 239.97508 * 20 19 18 24 24 N 1.28880 * 109.10358 * 359.72960 * 19 18 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 27 27 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 28 28 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.46987 * 60.00336 * 13 12 2 30 30 H 1.09004 * 109.47461 * 180.02562 * 13 12 2 31 31 H 1.08999 * 109.47654 * 300.00445 * 13 12 2 32 32 H 1.08997 * 109.46547 * 289.99793 * 14 12 2 33 33 H 1.09000 * 109.47275 * 50.00112 * 14 12 2 34 34 H 1.08997 * 109.47060 * 299.99724 * 15 14 12 35 35 H 1.08999 * 109.47436 * 59.99529 * 15 14 12 36 36 H 1.08998 * 109.47066 * 59.99539 * 21 20 19 37 37 H 1.08997 * 109.46756 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.46954 * 299.99257 * 21 20 19 39 39 H 1.09007 * 109.46883 * 60.00184 * 22 20 19 40 40 H 1.08997 * 109.46929 * 179.97438 * 22 20 19 41 41 H 1.08998 * 109.47412 * 300.00316 * 22 20 19 42 42 H 1.08999 * 109.47344 * 60.00655 * 23 20 19 43 43 H 1.09003 * 109.46786 * 180.02562 * 23 20 19 44 44 H 1.09001 * 109.47433 * 299.99803 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3426 -2.1616 -4.4119 10 1 2.4864 -0.1413 -5.1123 11 1 3.6292 -1.7582 -3.7122 12 7 2.0197 -0.6925 1.1994 13 6 3.4850 -0.7946 1.1870 14 6 1.5486 -0.0264 2.4211 15 6 1.8627 -0.9044 3.6341 16 6 1.3801 -0.2208 4.8874 17 7 0.1752 -0.3435 5.4449 18 7 0.1613 0.4007 6.4985 19 7 1.3072 0.9770 6.6128 20 6 1.6898 1.9028 7.6819 21 6 0.5153 2.0820 8.6459 22 6 2.8911 1.3362 8.4414 23 6 2.0626 3.2568 7.0749 24 7 2.0657 0.6043 5.6398 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3635 0.5138 -0.8899 28 1 0.7092 1.1618 -3.4843 29 1 3.9186 0.2051 1.1591 30 1 3.8209 -1.3117 2.0858 31 1 3.8029 -1.3532 0.3066 32 1 2.0519 0.9345 2.5280 33 1 0.4722 0.1323 2.3564 34 1 1.3595 -1.8653 3.5271 35 1 2.9391 -1.0632 3.6988 36 1 0.2497 1.1174 9.0783 37 1 0.8001 2.7704 9.4415 38 1 -0.3405 2.4857 8.1048 39 1 3.7279 1.2086 7.7545 40 1 3.1761 2.0252 9.2365 41 1 2.6256 0.3715 8.8738 42 1 1.2067 3.6604 6.5339 43 1 2.3476 3.9454 7.8703 44 1 2.8993 3.1292 6.3881 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595343359.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:31 Heat of formation + Delta-G solvation = 105.148970 kcal Electronic energy + Delta-G solvation = -22418.351517 eV Core-core repulsion = 19215.255322 eV Total energy + Delta-G solvation = -3203.096195 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.191 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.38387 -39.13737 -38.53078 -35.45366 -34.46909 -34.02204 -31.65171 -30.51803 -28.53071 -28.50973 -27.63834 -26.15797 -25.58611 -24.38313 -22.51912 -21.54143 -21.11711 -18.39544 -18.20353 -17.97854 -17.22203 -16.25335 -16.09256 -15.46283 -15.29422 -15.19920 -15.09402 -14.66858 -14.30770 -14.08841 -13.89137 -13.63153 -13.42426 -13.22130 -12.99208 -12.96731 -12.90281 -12.85018 -12.69734 -12.53168 -12.51047 -12.21651 -12.10204 -12.03321 -11.94739 -11.91034 -11.87719 -11.56334 -10.97790 -10.83612 -10.49953 -8.98315 -8.09985 -6.22041 0.21113 0.96562 1.08628 1.44476 1.45734 1.55711 2.43679 2.78056 3.15457 3.19039 3.50546 3.52761 3.61703 3.68564 4.08602 4.22613 4.39686 4.45839 4.47863 4.52621 4.54160 4.60503 4.67359 4.72157 4.72557 4.75715 4.78914 4.88921 4.96799 5.01747 5.04114 5.08294 5.11214 5.11367 5.23262 5.30931 5.37475 5.49957 5.73591 5.77791 6.24719 6.37863 6.69632 6.92541 7.35411 7.47180 8.96598 Molecular weight = 281.19amu Principal moments of inertia in cm(-1) A = 0.036627 B = 0.003129 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.279933 B = 8946.706907 C = 9020.819010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.217 3.783 3 H -0.040 1.040 4 C -0.518 4.518 5 H 0.066 0.934 6 C 0.009 3.991 7 N -0.924 5.924 8 Si 0.963 3.037 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.265 1.265 12 N -0.539 5.539 13 C 0.037 3.963 14 C 0.068 3.932 15 C -0.007 4.007 16 C 0.167 3.833 17 N -0.314 5.314 18 N -0.077 5.077 19 N -0.121 5.121 20 C 0.161 3.839 21 C -0.149 4.149 22 C -0.152 4.152 23 C -0.156 4.156 24 N -0.311 5.311 25 H 0.034 0.966 26 H 0.023 0.977 27 H 0.060 0.940 28 H 0.261 0.739 29 H 0.005 0.995 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.014 0.986 33 H 0.063 0.937 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.126 0.874 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.126 0.874 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.127 0.873 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.463 3.667 24.335 25.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.110 3.890 3 H -0.022 1.022 4 C -0.556 4.556 5 H 0.084 0.916 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.789 3.211 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.189 1.189 12 N -0.263 5.263 13 C -0.112 4.112 14 C -0.062 4.062 15 C -0.047 4.047 16 C -0.116 4.116 17 N -0.184 5.184 18 N -0.069 5.069 19 N -0.037 5.037 20 C 0.082 3.918 21 C -0.206 4.206 22 C -0.211 4.211 23 C -0.214 4.214 24 N -0.162 5.162 25 H 0.053 0.947 26 H 0.042 0.958 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.023 0.977 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.032 0.968 33 H 0.082 0.918 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.087 0.913 37 H 0.144 0.856 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.144 0.856 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.146 0.854 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.778 3.489 24.723 25.252 hybrid contribution 0.557 0.519 -1.637 1.805 sum 4.335 4.008 23.086 23.829 Atomic orbital electron populations 1.21685 0.97575 0.99403 0.99387 1.19044 0.92476 0.90150 0.87324 1.02219 1.21451 1.31121 1.12373 0.90666 0.91638 1.25765 0.95374 0.95749 1.02089 1.70037 1.37954 1.24326 1.24048 0.85476 0.78969 0.78114 0.78589 1.20189 1.21147 1.18926 1.62049 1.10768 1.52049 1.01470 1.22299 0.87285 0.99073 1.02496 1.21911 1.00249 0.94271 0.89753 1.19875 1.02889 0.98055 0.83888 1.25768 0.88275 0.97600 0.99930 1.75836 1.20476 1.18307 1.03743 1.78805 1.07457 1.06497 1.14169 1.51043 1.05640 1.29002 1.17998 1.22022 0.99325 0.87333 0.83117 1.22133 0.95261 1.04653 0.98600 1.22250 0.94869 1.02803 1.01152 1.22272 1.02326 0.93468 1.03374 1.74575 1.24227 1.16475 1.00919 0.94656 0.95800 0.92102 0.92984 0.97666 0.89793 0.91791 0.96752 0.91829 0.87548 0.87573 0.91320 0.85611 0.91853 0.91635 0.85599 0.92079 0.92772 0.85448 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.32 8.76 71.98 0.63 -5.69 16 2 C 0.22 11.43 2.06 44.17 0.09 11.52 16 3 H -0.04 -2.34 8.14 -2.39 -0.02 -2.36 16 4 C -0.52 -28.82 7.93 25.60 0.20 -28.62 16 5 H 0.07 3.56 6.39 -2.91 -0.02 3.54 16 6 C 0.01 0.48 5.30 84.65 0.45 0.93 16 7 N -0.92 -54.31 11.32 21.45 0.24 -54.06 16 8 Si 0.96 44.03 29.54 68.60 2.03 46.06 16 9 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 10 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 11 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 12 N -0.54 -23.52 4.62 -901.48 -4.17 -27.68 16 13 C 0.04 1.40 9.05 127.69 1.16 2.56 16 14 C 0.07 2.60 4.76 86.30 0.41 3.01 16 15 C -0.01 -0.20 5.77 29.85 0.17 -0.03 16 16 C 0.17 5.38 7.62 138.55 1.06 6.43 16 17 N -0.31 -10.74 12.50 -51.26 -0.64 -11.39 16 18 N -0.08 -2.32 12.24 37.02 0.45 -1.86 16 19 N -0.12 -3.06 3.73 -152.38 -0.57 -3.63 16 20 C 0.16 2.40 1.30 3.60 0.00 2.40 16 21 C -0.15 -1.58 7.91 71.98 0.57 -1.01 16 22 C -0.15 -1.61 8.66 71.98 0.62 -0.99 16 23 C -0.16 -1.98 8.67 71.98 0.62 -1.36 16 24 N -0.31 -9.11 11.83 -51.20 -0.61 -9.71 16 25 H 0.03 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.02 1.11 6.20 -2.39 -0.01 1.09 16 27 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 28 H 0.26 14.58 8.31 -92.71 -0.77 13.80 16 29 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.08 2.56 6.30 -2.38 -0.02 2.54 16 31 H 0.06 2.62 6.23 -2.39 -0.01 2.60 16 32 H 0.01 0.57 8.12 -2.39 -0.02 0.55 16 33 H 0.06 2.62 5.83 -2.39 -0.01 2.61 16 34 H 0.11 3.22 8.14 -2.39 -0.02 3.21 16 35 H 0.11 2.90 6.47 -2.39 -0.02 2.88 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -69.40 350.66 3.70 -65.70 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 0.97 Total: 7.41 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: 5.99 Total: -10.83 kcal Atomic # 7 Polarization: -103.06 SS G_CDS: -5.29 Total: -108.34 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -69.40 3.70 -65.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595343359.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.846 kcal (2) G-P(sol) polarization free energy of solvation -69.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds