Wall clock time and date at job start Tue Mar 31 2020 05:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46868 * 2 1 4 4 H 1.09002 * 109.47078 * 54.73557 * 3 2 1 5 5 C 1.50693 * 109.47165 * 174.73616 * 3 2 1 6 6 H 1.08000 * 120.00312 * 120.18812 * 5 3 2 7 7 C 1.37882 * 120.00092 * 300.18486 * 5 3 2 8 8 N 1.31509 * 120.00606 * 166.64147 * 7 5 3 9 9 Si 1.86808 * 119.99697 * 346.64919 * 7 5 3 10 10 H 1.48506 * 109.46812 * 264.65568 * 9 7 5 11 11 H 1.48500 * 109.47049 * 24.65446 * 9 7 5 12 12 H 1.48496 * 109.47050 * 144.65599 * 9 7 5 13 13 N 1.46903 * 109.47168 * 294.73724 * 3 2 1 14 14 C 1.46891 * 111.00400 * 101.60856 * 13 3 2 15 15 C 1.53006 * 109.47487 * 183.31828 * 14 13 3 16 16 C 1.50695 * 109.47261 * 179.97438 * 15 14 13 17 17 N 1.33315 * 126.54789 * 90.02816 * 16 15 14 18 18 N 1.28999 * 107.34840 * 179.97438 * 17 16 15 19 19 N 1.28778 * 108.73445 * 0.02562 * 18 17 16 20 20 C 1.46498 * 125.45399 * 180.02562 * 19 18 17 21 21 C 1.53006 * 109.46992 * 359.97438 * 20 19 18 22 22 C 1.53004 * 109.47234 * 119.97374 * 20 19 18 23 23 C 1.52993 * 109.47245 * 239.97194 * 20 19 18 24 24 N 1.28886 * 109.09933 * 359.72796 * 19 18 17 25 25 H 1.09006 * 109.46997 * 186.71116 * 1 2 3 26 26 H 1.09002 * 109.46799 * 306.70627 * 1 2 3 27 27 H 1.09001 * 109.47738 * 66.71170 * 1 2 3 28 28 H 1.08996 * 109.47137 * 240.00334 * 2 1 3 29 29 H 1.08994 * 109.47243 * 119.99969 * 2 1 3 30 30 H 0.96997 * 120.00761 * 180.02562 * 8 7 5 31 31 H 1.00909 * 110.99766 * 225.56395 * 13 3 2 32 32 H 1.09003 * 109.47403 * 303.31905 * 14 13 3 33 33 H 1.09004 * 109.47481 * 63.32204 * 14 13 3 34 34 H 1.08998 * 109.47072 * 300.00831 * 15 14 13 35 35 H 1.09004 * 109.46454 * 59.99746 * 15 14 13 36 36 H 1.08994 * 109.46782 * 59.99744 * 21 20 19 37 37 H 1.08996 * 109.46868 * 180.02562 * 21 20 19 38 38 H 1.08996 * 109.46773 * 299.99862 * 21 20 19 39 39 H 1.08999 * 109.47044 * 59.99739 * 22 20 19 40 40 H 1.08992 * 109.47481 * 180.02562 * 22 20 19 41 41 H 1.09007 * 109.47063 * 300.00160 * 22 20 19 42 42 H 1.09009 * 109.47082 * 60.00129 * 23 20 19 43 43 H 1.09005 * 109.47251 * 179.97438 * 23 20 19 44 44 H 1.09000 * 109.47556 * 300.00313 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6016 1.9829 0.8391 5 6 3.5412 1.4446 0.1303 6 1 4.1498 1.8907 -0.6424 7 6 4.1380 0.8770 1.2362 8 7 5.4316 0.6400 1.2364 9 14 3.1090 0.4445 2.7340 10 1 3.1754 1.5551 3.7176 11 1 1.6984 0.2326 2.3211 12 1 3.6352 -0.7980 3.3541 13 7 1.6567 2.0974 -1.2579 14 6 0.4921 2.9712 -1.0631 15 6 0.0728 3.5695 -2.4074 16 6 -1.1223 4.4654 -2.2076 17 7 -1.0997 5.7703 -1.9356 18 7 -2.3242 6.1648 -1.8407 19 7 -3.1002 5.1570 -2.0424 20 6 -4.5645 5.1942 -2.0198 21 6 -5.0339 6.6189 -1.7183 22 6 -5.1068 4.7561 -3.3818 23 6 -5.0821 4.2464 -0.9361 24 7 -2.3825 4.1117 -2.2734 25 1 -0.3633 -1.0207 0.1201 26 1 -0.3633 0.6143 0.8239 27 1 -0.3634 0.4063 -0.9439 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.8514 0.2404 2.0142 31 1 2.4324 2.6106 -1.6493 32 1 -0.3330 2.3904 -0.6508 33 1 0.7517 3.7742 -0.3732 34 1 0.8979 4.1502 -2.8198 35 1 -0.1867 2.7665 -3.0973 36 1 -4.6651 7.2939 -2.4904 37 1 -6.1234 6.6464 -1.7011 38 1 -4.6476 6.9309 -0.7480 39 1 -4.7723 3.7411 -3.5967 40 1 -6.1963 4.7841 -3.3652 41 1 -4.7380 5.4313 -4.1540 42 1 -4.6958 4.5586 0.0343 43 1 -6.1717 4.2744 -0.9190 44 1 -4.7477 3.2315 -1.1508 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595529056.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:49 Heat of formation + Delta-G solvation = 118.021290 kcal Electronic energy + Delta-G solvation = -22394.110189 eV Core-core repulsion = 19191.572180 eV Total energy + Delta-G solvation = -3202.538009 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.191 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.30319 -37.97741 -36.82229 -34.08614 -33.33366 -32.22020 -31.42506 -29.28115 -28.01255 -27.95231 -26.67940 -24.60268 -23.25066 -22.29711 -21.18887 -20.69547 -19.63634 -17.26738 -17.23090 -16.80250 -15.54266 -15.13801 -14.64848 -14.59176 -14.21379 -13.89887 -13.65457 -13.30851 -13.20280 -12.94520 -12.90217 -12.74362 -12.56487 -12.31777 -12.10928 -11.99500 -11.92100 -11.78067 -11.52720 -11.45981 -10.98408 -10.85714 -10.81052 -10.74131 -10.54443 -10.36135 -9.93321 -9.74500 -9.16497 -9.04006 -8.45287 -7.46128 -6.11468 -4.07746 1.27704 1.78835 2.27199 3.28303 3.38303 3.41857 3.73510 4.08566 4.11515 4.18835 4.41641 4.60174 4.93486 4.95910 5.02211 5.12672 5.13858 5.17740 5.19254 5.27275 5.46552 5.49035 5.53318 5.61714 5.65185 5.77730 5.90034 6.01634 6.07738 6.09981 6.24623 6.27898 6.32722 6.38555 6.70652 6.79776 7.04812 7.06709 7.47049 7.65106 7.98538 8.36105 8.46490 8.60774 8.96156 9.53866 11.01414 Molecular weight = 281.19amu Principal moments of inertia in cm(-1) A = 0.027746 B = 0.003490 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.915554 B = 8020.913935 C = 8289.904855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C 0.193 3.807 4 H 0.003 0.997 5 C -0.533 4.533 6 H 0.077 0.923 7 C 0.077 3.923 8 N -0.892 5.892 9 Si 0.859 3.141 10 H -0.284 1.284 11 H -0.242 1.242 12 H -0.286 1.286 13 N -0.678 5.678 14 C 0.064 3.936 15 C -0.021 4.021 16 C 0.179 3.821 17 N -0.285 5.285 18 N -0.069 5.069 19 N -0.136 5.136 20 C 0.180 3.820 21 C -0.152 4.152 22 C -0.158 4.158 23 C -0.159 4.159 24 N -0.305 5.305 25 H 0.034 0.966 26 H 0.035 0.965 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.264 0.736 31 H 0.341 0.659 32 H 0.070 0.930 33 H 0.026 0.974 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.925 8.139 -7.105 26.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C 0.084 3.916 4 H 0.020 0.980 5 C -0.570 4.570 6 H 0.095 0.905 7 C -0.126 4.126 8 N -0.529 5.529 9 Si 0.686 3.314 10 H -0.211 1.211 11 H -0.166 1.166 12 H -0.212 1.212 13 N -0.309 5.309 14 C -0.067 4.067 15 C -0.062 4.062 16 C -0.104 4.104 17 N -0.156 5.156 18 N -0.062 5.062 19 N -0.050 5.050 20 C 0.098 3.902 21 C -0.210 4.210 22 C -0.216 4.216 23 C -0.218 4.218 24 N -0.155 5.155 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.159 0.841 32 H 0.088 0.912 33 H 0.045 0.955 34 H 0.112 0.888 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.107 0.893 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -24.516 8.093 -7.104 26.777 hybrid contribution 0.298 0.068 1.368 1.402 sum -24.218 8.161 -5.736 26.192 Atomic orbital electron populations 1.21853 0.98618 0.99296 1.00643 1.21980 0.92789 0.99366 1.01014 1.19429 0.95416 0.90718 0.86018 0.97977 1.21258 0.89378 1.39310 1.07104 0.90531 1.24902 0.94744 0.94392 0.98531 1.69961 1.10483 1.42608 1.29850 0.87363 0.82725 0.77980 0.83291 1.21080 1.16626 1.21242 1.60536 1.08018 1.32677 1.29684 1.21945 0.95985 0.95199 0.93587 1.19992 0.89994 0.95870 1.00362 1.25760 0.92868 0.91321 1.00486 1.75873 1.10567 1.11126 1.18046 1.78883 0.95685 1.15585 1.16011 1.50454 1.09973 1.02717 1.41853 1.21316 0.70051 0.99633 0.99162 1.22076 1.02323 0.92406 1.04212 1.22221 1.02267 1.03459 0.93661 1.22234 1.02401 0.99815 0.97315 1.74635 1.04192 1.14760 1.21913 0.94723 0.94572 0.92553 0.92141 0.92880 0.92656 0.84077 0.91183 0.95547 0.88818 0.88334 0.90678 0.89420 0.90630 0.90333 0.89340 0.91510 0.91405 0.89327 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 8.64 37.16 0.32 -2.42 16 2 C -0.11 -2.51 4.73 -26.73 -0.13 -2.64 16 3 C 0.19 4.53 1.76 -68.87 -0.12 4.41 16 4 H 0.00 0.06 6.67 -51.93 -0.35 -0.28 16 5 C -0.53 -14.75 9.10 -34.44 -0.31 -15.06 16 6 H 0.08 2.27 7.65 -52.49 -0.40 1.87 16 7 C 0.08 2.21 5.35 -17.82 -0.10 2.12 16 8 N -0.89 -27.11 13.96 55.43 0.77 -26.34 16 9 Si 0.86 21.19 25.68 -169.99 -4.37 16.82 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 11 H -0.24 -5.61 5.15 56.52 0.29 -5.32 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 N -0.68 -13.56 6.09 -107.95 -0.66 -14.21 16 14 C 0.06 1.12 5.04 -3.83 -0.02 1.10 16 15 C -0.02 -0.31 6.13 -27.88 -0.17 -0.48 16 16 C 0.18 2.75 7.62 -156.62 -1.19 1.56 16 17 N -0.29 -4.69 12.50 32.45 0.41 -4.28 16 18 N -0.07 -1.01 12.24 60.35 0.74 -0.27 16 19 N -0.14 -1.71 3.73 0.48 0.00 -1.70 16 20 C 0.18 1.43 1.30 -131.82 -0.17 1.26 16 21 C -0.15 -0.93 7.91 37.16 0.29 -0.64 16 22 C -0.16 -0.98 8.66 37.16 0.32 -0.66 16 23 C -0.16 -1.10 8.67 37.15 0.32 -0.77 16 24 N -0.31 -4.35 11.83 32.47 0.38 -3.96 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.04 0.67 8.08 -51.93 -0.42 0.25 16 27 H 0.06 1.00 6.88 -51.93 -0.36 0.64 16 28 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.05 1.24 4.10 -51.93 -0.21 1.02 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.34 6.84 7.94 -39.29 -0.31 6.52 16 32 H 0.07 1.24 6.05 -51.93 -0.31 0.93 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 42 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 43 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 349.97 15.07 5.27 5.27 Total: -1.00 -32.15 349.97 -5.93 -38.07 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -7.53 Total: 2.84 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -0.95 Total: -12.23 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: 1.65 Total: -50.78 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.37 Total: 16.82 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.15 -5.93 -38.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595529056.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.095 kcal (2) G-P(sol) polarization free energy of solvation -32.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds