Wall clock time and date at job start Tue Mar 31 2020 05:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47377 * 2 1 4 4 H 1.09000 * 109.47222 * 306.03534 * 3 2 1 5 5 C 1.50700 * 109.47451 * 186.02917 * 3 2 1 6 6 H 1.07997 * 120.00627 * 243.91268 * 5 3 2 7 7 C 1.37881 * 119.99405 * 63.91443 * 5 3 2 8 8 N 1.31519 * 119.99779 * 197.17347 * 7 5 3 9 9 Si 1.86796 * 120.00249 * 17.17769 * 7 5 3 10 10 H 1.48499 * 109.47074 * 86.28489 * 9 7 5 11 11 H 1.48500 * 109.47361 * 206.28667 * 9 7 5 12 12 H 1.48501 * 109.47086 * 326.28800 * 9 7 5 13 13 N 1.46908 * 109.47098 * 66.03341 * 3 2 1 14 14 C 1.46891 * 111.00149 * 251.13782 * 13 3 2 15 15 C 1.52997 * 109.47289 * 184.30013 * 14 13 3 16 16 C 1.50705 * 109.47209 * 180.02562 * 15 14 13 17 17 N 1.33318 * 126.55298 * 90.02373 * 16 15 14 18 18 N 1.28997 * 107.35428 * 179.97438 * 17 16 15 19 19 N 1.28781 * 108.72508 * 359.97438 * 18 17 16 20 20 C 1.46503 * 125.44968 * 180.02562 * 19 18 17 21 21 C 1.52999 * 109.46837 * 359.96928 * 20 19 18 22 22 C 1.52993 * 109.47609 * 119.97131 * 20 19 18 23 23 C 1.53001 * 109.46920 * 239.97556 * 20 19 18 24 24 N 1.28881 * 109.10439 * 359.72972 * 19 18 17 25 25 H 1.09001 * 109.46747 * 295.84520 * 1 2 3 26 26 H 1.09000 * 109.47089 * 175.84449 * 1 2 3 27 27 H 1.08996 * 109.47016 * 55.84668 * 1 2 3 28 28 H 1.08999 * 109.47337 * 120.00391 * 2 1 3 29 29 H 1.09007 * 109.47372 * 240.00137 * 2 1 3 30 30 H 0.96999 * 119.99865 * 179.97438 * 8 7 5 31 31 H 1.00899 * 110.99874 * 127.17779 * 13 3 2 32 32 H 1.08999 * 109.47441 * 304.30186 * 14 13 3 33 33 H 1.09003 * 109.47207 * 64.29862 * 14 13 3 34 34 H 1.09005 * 109.46763 * 300.00065 * 15 14 13 35 35 H 1.08994 * 109.47146 * 59.99638 * 15 14 13 36 36 H 1.09003 * 109.46673 * 60.00477 * 21 20 19 37 37 H 1.09005 * 109.47149 * 179.97438 * 21 20 19 38 38 H 1.08997 * 109.47542 * 300.00289 * 21 20 19 39 39 H 1.09002 * 109.46950 * 60.00180 * 22 20 19 40 40 H 1.08994 * 109.47492 * 179.97438 * 22 20 19 41 41 H 1.09003 * 109.47327 * 300.00396 * 22 20 19 42 42 H 1.08997 * 109.47290 * 59.99814 * 23 20 19 43 43 H 1.09002 * 109.47258 * 179.97438 * 23 20 19 44 44 H 1.09002 * 109.47109 * 299.99496 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5912 1.9866 -0.8310 5 6 3.5396 1.4451 -0.1492 6 1 4.1609 1.8276 0.6470 7 6 4.1184 0.9591 -1.3025 8 7 5.3952 0.6439 -1.3150 9 14 3.0892 0.7485 -2.8470 10 1 3.0617 2.0271 -3.6017 11 1 3.6831 -0.3150 -3.6964 12 1 1.7045 0.3659 -2.4708 13 7 1.6728 2.0917 1.2657 14 6 0.6192 3.0937 1.0570 15 6 0.3397 3.8216 2.3734 16 6 -0.7417 4.8492 2.1595 17 7 -2.0545 4.6599 2.2935 18 7 -2.6343 5.7802 2.0234 19 7 -1.7331 6.6517 1.7291 20 6 -1.9879 8.0475 1.3641 21 6 -3.4945 8.3131 1.3850 22 6 -1.2931 8.9718 2.3659 23 6 -1.4423 8.3151 -0.0401 24 7 -0.5707 6.1014 1.8132 25 1 -0.3633 0.4480 0.9249 26 1 -0.3633 -1.0250 -0.0745 27 1 -0.3633 0.5769 -0.8504 28 1 1.8933 -0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 5.8023 0.3016 -2.1262 31 1 2.4806 2.5031 1.7086 32 1 0.9456 3.8133 0.3062 33 1 -0.2900 2.5992 0.7151 34 1 0.0133 3.1019 3.1242 35 1 1.2489 4.3161 2.7153 36 1 -3.8831 8.1225 2.3854 37 1 -3.6841 9.3517 1.1138 38 1 -3.9895 7.6547 0.6713 39 1 -0.2197 8.7825 2.3509 40 1 -1.4823 10.0102 2.0940 41 1 -1.6817 8.7811 3.3663 42 1 -1.9374 7.6566 -0.7538 43 1 -1.6323 9.3534 -0.3119 44 1 -0.3690 8.1258 -0.0550 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595529059.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:52 Heat of formation + Delta-G solvation = 113.080336 kcal Electronic energy + Delta-G solvation = -22336.510266 eV Core-core repulsion = 19133.758001 eV Total energy + Delta-G solvation = -3202.752265 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.191 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.29908 -37.96365 -36.75798 -34.08854 -33.32655 -32.22011 -31.44133 -29.21851 -27.99328 -27.93243 -26.63118 -24.59164 -23.25626 -22.27916 -21.23759 -20.67384 -19.56143 -17.27110 -17.21161 -16.84749 -15.48671 -14.93619 -14.63736 -14.48641 -14.43739 -13.94110 -13.48031 -13.39974 -13.24120 -12.93086 -12.82367 -12.72979 -12.50041 -12.30025 -12.10566 -12.00516 -11.81603 -11.74956 -11.51664 -11.44741 -10.93929 -10.84905 -10.79932 -10.76108 -10.57413 -10.36095 -9.90617 -9.73702 -9.34313 -9.15775 -8.40234 -7.44371 -6.14550 -4.08806 1.28357 1.79710 2.27504 3.27955 3.37159 3.41555 3.74709 4.10106 4.11691 4.20413 4.40826 4.60627 4.94896 4.97750 5.04088 5.13724 5.14369 5.18955 5.20928 5.25360 5.46462 5.49140 5.51334 5.64096 5.70096 5.75032 5.90599 6.02180 6.14199 6.16735 6.24075 6.32897 6.36920 6.39651 6.72277 6.85030 7.10373 7.13157 7.48611 7.65986 7.98332 8.35421 8.46876 8.59494 8.94694 9.52494 10.98249 Molecular weight = 281.19amu Principal moments of inertia in cm(-1) A = 0.022869 B = 0.003615 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.068636 B = 7743.884031 C = 8100.086595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C 0.192 3.808 4 H 0.006 0.994 5 C -0.539 4.539 6 H 0.076 0.924 7 C 0.080 3.920 8 N -0.888 5.888 9 Si 0.861 3.139 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.250 1.250 13 N -0.678 5.678 14 C 0.068 3.932 15 C -0.023 4.023 16 C 0.179 3.821 17 N -0.284 5.284 18 N -0.069 5.069 19 N -0.136 5.136 20 C 0.179 3.821 21 C -0.152 4.152 22 C -0.158 4.158 23 C -0.160 4.160 24 N -0.306 5.306 25 H 0.056 0.944 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.264 0.736 31 H 0.340 0.660 32 H 0.026 0.974 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.778 16.996 5.206 23.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C 0.084 3.916 4 H 0.024 0.976 5 C -0.576 4.576 6 H 0.094 0.906 7 C -0.124 4.124 8 N -0.525 5.525 9 Si 0.688 3.312 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.174 1.174 13 N -0.310 5.310 14 C -0.063 4.063 15 C -0.064 4.064 16 C -0.104 4.104 17 N -0.155 5.155 18 N -0.062 5.062 19 N -0.050 5.050 20 C 0.098 3.902 21 C -0.210 4.210 22 C -0.216 4.216 23 C -0.218 4.218 24 N -0.155 5.155 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.158 0.842 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.120 0.880 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.107 0.893 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.687 16.708 5.246 24.189 hybrid contribution 0.599 0.407 -1.441 1.613 sum -16.088 17.115 3.804 23.796 Atomic orbital electron populations 1.21824 0.98505 0.99356 1.00740 1.21850 0.92786 0.99182 1.00838 1.19449 0.95247 0.90921 0.86029 0.97585 1.21317 0.89606 1.43105 1.03605 0.90613 1.24890 0.94749 0.93891 0.98836 1.70002 1.12181 1.42104 1.28190 0.87247 0.82357 0.77945 0.83672 1.20726 1.21363 1.17426 1.60615 1.13085 1.30504 1.26748 1.21911 0.97304 0.93533 0.93595 1.20024 0.92866 0.92862 1.00626 1.25735 0.93373 0.91304 1.00016 1.75857 1.05933 1.14946 1.18790 1.78877 1.19439 0.93960 1.13922 1.50452 1.01020 1.12331 1.41157 1.21320 0.98711 0.72726 0.97408 1.22076 0.90866 1.03416 1.04632 1.22220 1.02169 0.99023 0.98216 1.22238 1.03238 1.03516 0.92812 1.74647 1.09002 1.10101 1.21798 0.92475 0.94711 0.94639 0.92254 0.93159 0.92634 0.84178 0.95624 0.91309 0.87956 0.89144 0.90691 0.89414 0.90633 0.90327 0.89320 0.91507 0.91400 0.89308 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.13 37.16 0.34 -2.49 16 2 C -0.11 -2.43 4.91 -26.73 -0.13 -2.56 16 3 C 0.19 4.52 1.73 -68.86 -0.12 4.40 16 4 H 0.01 0.16 6.25 -51.93 -0.32 -0.17 16 5 C -0.54 -14.82 9.02 -34.44 -0.31 -15.13 16 6 H 0.08 2.23 7.61 -52.49 -0.40 1.83 16 7 C 0.08 2.27 5.30 -17.82 -0.09 2.18 16 8 N -0.89 -26.78 13.96 55.43 0.77 -26.01 16 9 Si 0.86 21.27 25.83 -169.99 -4.39 16.88 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.25 -5.89 5.57 56.52 0.31 -5.58 16 13 N -0.68 -13.57 6.05 -107.95 -0.65 -14.22 16 14 C 0.07 1.19 5.18 -3.83 -0.02 1.17 16 15 C -0.02 -0.34 6.06 -27.88 -0.17 -0.51 16 16 C 0.18 2.77 7.62 -156.62 -1.19 1.58 16 17 N -0.28 -4.63 12.50 32.45 0.41 -4.22 16 18 N -0.07 -1.01 12.24 60.35 0.74 -0.28 16 19 N -0.14 -1.73 3.73 0.48 0.00 -1.73 16 20 C 0.18 1.49 1.30 -131.82 -0.17 1.31 16 21 C -0.15 -0.95 7.91 37.16 0.29 -0.66 16 22 C -0.16 -1.04 8.66 37.15 0.32 -0.72 16 23 C -0.16 -1.17 8.67 37.16 0.32 -0.85 16 24 N -0.31 -4.47 11.83 32.47 0.38 -4.09 16 25 H 0.06 1.05 7.10 -51.93 -0.37 0.68 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.05 1.19 4.95 -51.93 -0.26 0.93 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.34 6.77 7.77 -39.29 -0.31 6.46 16 32 H 0.03 0.48 8.04 -51.93 -0.42 0.06 16 33 H 0.07 1.25 6.90 -51.93 -0.36 0.89 16 34 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 35 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 352.33 15.07 5.31 5.31 Total: -1.00 -31.90 352.33 -5.94 -37.84 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -7.57 Total: 2.78 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -0.93 Total: -12.26 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: 1.65 Total: -50.55 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.39 Total: 16.88 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.90 -5.94 -37.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595529059.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.916 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds