Wall clock time and date at job start Tue Mar 31 2020 05:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47377 * 2 1 4 4 H 1.09000 * 109.47222 * 306.03534 * 3 2 1 5 5 C 1.50700 * 109.47451 * 186.02917 * 3 2 1 6 6 H 1.07997 * 120.00627 * 243.91268 * 5 3 2 7 7 C 1.37881 * 119.99405 * 63.91443 * 5 3 2 8 8 N 1.31519 * 119.99779 * 197.17347 * 7 5 3 9 9 Si 1.86796 * 120.00249 * 17.17769 * 7 5 3 10 10 H 1.48499 * 109.47074 * 86.28489 * 9 7 5 11 11 H 1.48500 * 109.47361 * 206.28667 * 9 7 5 12 12 H 1.48501 * 109.47086 * 326.28800 * 9 7 5 13 13 N 1.46908 * 109.47098 * 66.03341 * 3 2 1 14 14 C 1.46891 * 111.00149 * 251.13782 * 13 3 2 15 15 C 1.52997 * 109.47289 * 184.30013 * 14 13 3 16 16 C 1.50705 * 109.47209 * 180.02562 * 15 14 13 17 17 N 1.33318 * 126.55298 * 90.02373 * 16 15 14 18 18 N 1.28997 * 107.35428 * 179.97438 * 17 16 15 19 19 N 1.28781 * 108.72508 * 359.97438 * 18 17 16 20 20 C 1.46503 * 125.44968 * 180.02562 * 19 18 17 21 21 C 1.52999 * 109.46837 * 359.96928 * 20 19 18 22 22 C 1.52993 * 109.47609 * 119.97131 * 20 19 18 23 23 C 1.53001 * 109.46920 * 239.97556 * 20 19 18 24 24 N 1.28881 * 109.10439 * 359.72972 * 19 18 17 25 25 H 1.09001 * 109.46747 * 295.84520 * 1 2 3 26 26 H 1.09000 * 109.47089 * 175.84449 * 1 2 3 27 27 H 1.08996 * 109.47016 * 55.84668 * 1 2 3 28 28 H 1.08999 * 109.47337 * 120.00391 * 2 1 3 29 29 H 1.09007 * 109.47372 * 240.00137 * 2 1 3 30 30 H 0.96999 * 119.99865 * 179.97438 * 8 7 5 31 31 H 1.00899 * 110.99874 * 127.17779 * 13 3 2 32 32 H 1.08999 * 109.47441 * 304.30186 * 14 13 3 33 33 H 1.09003 * 109.47207 * 64.29862 * 14 13 3 34 34 H 1.09005 * 109.46763 * 300.00065 * 15 14 13 35 35 H 1.08994 * 109.47146 * 59.99638 * 15 14 13 36 36 H 1.09003 * 109.46673 * 60.00477 * 21 20 19 37 37 H 1.09005 * 109.47149 * 179.97438 * 21 20 19 38 38 H 1.08997 * 109.47542 * 300.00289 * 21 20 19 39 39 H 1.09002 * 109.46950 * 60.00180 * 22 20 19 40 40 H 1.08994 * 109.47492 * 179.97438 * 22 20 19 41 41 H 1.09003 * 109.47327 * 300.00396 * 22 20 19 42 42 H 1.08997 * 109.47290 * 59.99814 * 23 20 19 43 43 H 1.09002 * 109.47258 * 179.97438 * 23 20 19 44 44 H 1.09002 * 109.47109 * 299.99496 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5912 1.9866 -0.8310 5 6 3.5396 1.4451 -0.1492 6 1 4.1609 1.8276 0.6470 7 6 4.1184 0.9591 -1.3025 8 7 5.3952 0.6439 -1.3150 9 14 3.0892 0.7485 -2.8470 10 1 3.0617 2.0271 -3.6017 11 1 3.6831 -0.3150 -3.6964 12 1 1.7045 0.3659 -2.4708 13 7 1.6728 2.0917 1.2657 14 6 0.6192 3.0937 1.0570 15 6 0.3397 3.8216 2.3734 16 6 -0.7417 4.8492 2.1595 17 7 -2.0545 4.6599 2.2935 18 7 -2.6343 5.7802 2.0234 19 7 -1.7331 6.6517 1.7291 20 6 -1.9879 8.0475 1.3641 21 6 -3.4945 8.3131 1.3850 22 6 -1.2931 8.9718 2.3659 23 6 -1.4423 8.3151 -0.0401 24 7 -0.5707 6.1014 1.8132 25 1 -0.3633 0.4480 0.9249 26 1 -0.3633 -1.0250 -0.0745 27 1 -0.3633 0.5769 -0.8504 28 1 1.8933 -0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 5.8023 0.3016 -2.1262 31 1 2.4806 2.5031 1.7086 32 1 0.9456 3.8133 0.3062 33 1 -0.2900 2.5992 0.7151 34 1 0.0133 3.1019 3.1242 35 1 1.2489 4.3161 2.7153 36 1 -3.8831 8.1225 2.3854 37 1 -3.6841 9.3517 1.1138 38 1 -3.9895 7.6547 0.6713 39 1 -0.2197 8.7825 2.3509 40 1 -1.4823 10.0102 2.0940 41 1 -1.6817 8.7811 3.3663 42 1 -1.9374 7.6566 -0.7538 43 1 -1.6323 9.3534 -0.3119 44 1 -0.3690 8.1258 -0.0550 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595529059.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:51 Heat of formation + Delta-G solvation = 90.758130 kcal Electronic energy + Delta-G solvation = -22337.478229 eV Core-core repulsion = 19133.758001 eV Total energy + Delta-G solvation = -3203.720229 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.191 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.38773 -38.79899 -38.34027 -35.53691 -34.43392 -34.08219 -32.92313 -30.65208 -28.73460 -28.53243 -28.18367 -25.60832 -24.81833 -23.90859 -22.51217 -21.58230 -21.35245 -19.01853 -18.23096 -17.97274 -17.23746 -16.22311 -16.01319 -15.55341 -15.29658 -15.18729 -14.92103 -14.79172 -14.63768 -14.23140 -13.90296 -13.61340 -13.47017 -13.40900 -13.22386 -13.11151 -12.97984 -12.85930 -12.69919 -12.58189 -12.50699 -12.31691 -12.11383 -12.04917 -11.90349 -11.81163 -11.64477 -11.27797 -11.12949 -10.95439 -10.55079 -9.13557 -8.34423 -6.32386 0.20832 0.95801 1.08749 1.31521 1.35727 1.45598 2.33127 2.78344 2.99926 3.15754 3.51577 3.59784 3.67144 3.71223 4.13376 4.24771 4.40390 4.45650 4.46867 4.49487 4.51478 4.55347 4.59383 4.67701 4.69257 4.71366 4.71828 4.80876 4.90139 4.99341 5.02623 5.06116 5.10099 5.22035 5.22565 5.33223 5.36633 5.43577 5.56153 5.80373 6.01346 6.46064 6.63830 6.87625 7.32869 7.35021 8.81698 Molecular weight = 281.19amu Principal moments of inertia in cm(-1) A = 0.022869 B = 0.003615 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.068636 B = 7743.884031 C = 8100.086595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.109 4.109 3 C 0.197 3.803 4 H 0.001 0.999 5 C -0.542 4.542 6 H 0.043 0.957 7 C 0.027 3.973 8 N -0.934 5.934 9 Si 0.920 3.080 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.230 1.230 13 N -0.673 5.673 14 C 0.076 3.924 15 C -0.012 4.012 16 C 0.167 3.833 17 N -0.310 5.310 18 N -0.076 5.076 19 N -0.122 5.122 20 C 0.162 3.838 21 C -0.148 4.148 22 C -0.153 4.153 23 C -0.157 4.157 24 N -0.314 5.314 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.036 0.964 28 H 0.051 0.949 29 H 0.037 0.963 30 H 0.266 0.734 31 H 0.340 0.660 32 H 0.012 0.988 33 H 0.066 0.934 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.125 0.875 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.125 0.875 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.126 0.874 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.061 18.503 4.830 26.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.147 4.147 3 C 0.088 3.912 4 H 0.019 0.981 5 C -0.580 4.580 6 H 0.061 0.939 7 C -0.172 4.172 8 N -0.573 5.573 9 Si 0.744 3.256 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.153 1.153 13 N -0.303 5.303 14 C -0.055 4.055 15 C -0.052 4.052 16 C -0.116 4.116 17 N -0.180 5.180 18 N -0.069 5.069 19 N -0.038 5.038 20 C 0.083 3.917 21 C -0.206 4.206 22 C -0.212 4.212 23 C -0.215 4.215 24 N -0.165 5.165 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.158 0.842 32 H 0.031 0.969 33 H 0.085 0.915 34 H 0.130 0.870 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.143 0.857 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.143 0.857 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.145 0.855 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.003 18.224 4.887 26.779 hybrid contribution 1.333 0.080 -1.265 1.839 sum -17.670 18.304 3.621 25.698 Atomic orbital electron populations 1.21722 0.95630 1.00964 1.01202 1.21773 0.95317 0.97765 0.99878 1.19322 0.92428 0.92163 0.87306 0.98107 1.21629 0.91732 1.42017 1.02636 0.93860 1.25680 0.95770 0.93836 1.01964 1.70120 1.14134 1.43913 1.29158 0.86293 0.81735 0.77958 0.79633 1.20426 1.21085 1.15311 1.60581 1.13454 1.31461 1.24851 1.21835 0.96042 0.92700 0.94936 1.19879 0.93361 0.92895 0.99102 1.25769 0.93345 0.91755 1.00706 1.75814 1.06297 1.15974 1.19937 1.78801 1.19706 0.94029 1.14320 1.51021 1.00137 1.13413 1.39187 1.21996 1.00522 0.70805 0.98414 1.22131 0.88928 1.05453 1.04079 1.22250 1.00873 1.00556 0.97484 1.22273 1.01795 1.05590 0.91828 1.74615 1.10023 1.09975 1.21907 0.91785 0.92508 0.94458 0.93031 0.94407 0.92493 0.84238 0.96950 0.91509 0.86972 0.88080 0.91278 0.85709 0.91702 0.91790 0.85664 0.92028 0.92602 0.85539 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.95 9.13 71.98 0.66 -4.29 16 2 C -0.11 -4.75 4.91 30.59 0.15 -4.60 16 3 C 0.20 9.19 1.73 44.17 0.08 9.27 16 4 H 0.00 0.06 6.25 -2.39 -0.01 0.04 16 5 C -0.54 -30.38 9.02 25.60 0.23 -30.15 16 6 H 0.04 2.64 7.61 -2.91 -0.02 2.62 16 7 C 0.03 1.55 5.30 84.65 0.45 2.00 16 8 N -0.93 -57.65 13.96 21.45 0.30 -57.35 16 9 Si 0.92 43.79 25.83 68.60 1.77 45.57 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 11 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 12 H -0.23 -10.13 5.57 99.48 0.55 -9.58 16 13 N -0.67 -26.63 6.05 -495.46 -3.00 -29.63 16 14 C 0.08 2.61 5.18 86.30 0.45 3.06 16 15 C -0.01 -0.34 6.06 29.85 0.18 -0.16 16 16 C 0.17 5.09 7.62 138.55 1.06 6.14 16 17 N -0.31 -9.92 12.50 -51.26 -0.64 -10.56 16 18 N -0.08 -2.18 12.24 37.02 0.45 -1.73 16 19 N -0.12 -2.99 3.73 -152.40 -0.57 -3.56 16 20 C 0.16 2.36 1.30 3.60 0.00 2.37 16 21 C -0.15 -1.49 7.91 71.98 0.57 -0.92 16 22 C -0.15 -1.66 8.66 71.98 0.62 -1.03 16 23 C -0.16 -1.98 8.67 71.98 0.62 -1.36 16 24 N -0.31 -9.02 11.83 -51.19 -0.61 -9.63 16 25 H 0.06 2.20 7.10 -2.39 -0.02 2.18 16 26 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.04 1.72 4.95 -2.38 -0.01 1.71 16 30 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 31 H 0.34 13.60 7.77 -89.69 -0.70 12.90 16 32 H 0.01 0.46 8.04 -2.39 -0.02 0.44 16 33 H 0.07 2.34 6.90 -2.39 -0.02 2.32 16 34 H 0.11 2.98 8.14 -2.38 -0.02 2.97 16 35 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.12 0.32 8.14 -2.38 -0.02 0.30 16 38 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -69.96 352.33 2.91 -67.05 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.13 Total: 19.51 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: 5.07 Total: -19.66 kcal Atomic # 7 Polarization: -108.40 SS G_CDS: -4.06 Total: -112.46 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.77 Total: 45.57 kcal Total: -69.96 2.91 -67.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595529059.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.807 kcal (2) G-P(sol) polarization free energy of solvation -69.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds