Wall clock time and date at job start Tue Mar 31 2020 05:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86793 * 120.00338 * 2 1 4 4 H 1.48494 * 109.47382 * 270.00423 * 3 2 1 5 5 H 1.48505 * 109.46796 * 30.00335 * 3 2 1 6 6 H 1.48507 * 109.47259 * 149.99816 * 3 2 1 7 7 C 1.37881 * 119.99577 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99909 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00122 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.50187 * 60.08155 * 9 7 2 11 11 C 1.53115 * 109.50467 * 300.00170 * 9 7 2 12 12 C 1.53117 * 109.16360 * 182.36224 * 11 9 7 13 13 C 1.53038 * 109.27421 * 57.65205 * 12 11 9 14 14 N 1.46847 * 109.52866 * 300.82510 * 13 12 11 15 15 C 1.46899 * 111.00044 * 185.83761 * 14 13 12 16 16 C 1.52997 * 109.47254 * 66.04569 * 15 14 13 17 17 O 1.42904 * 109.47396 * 64.99580 * 16 15 14 18 18 C 1.42896 * 114.00313 * 180.02562 * 17 16 15 19 19 C 1.53002 * 109.47055 * 180.02562 * 18 17 16 20 20 C 1.54273 * 110.02997 * 292.90592 * 19 18 17 21 21 C 1.54966 * 104.15835 * 217.13766 * 20 19 18 22 22 C 1.54890 * 102.77645 * 37.88767 * 21 20 19 23 23 C 1.53872 * 110.03396 * 175.69054 * 19 18 17 24 24 C 1.46844 * 111.19785 * 61.74095 * 14 13 12 25 25 H 0.97005 * 120.00095 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.52163 * 62.45972 * 11 9 7 27 27 H 1.08995 * 109.58008 * 302.30636 * 11 9 7 28 28 H 1.09005 * 109.50250 * 297.72011 * 12 11 9 29 29 H 1.08997 * 109.54047 * 177.61757 * 12 11 9 30 30 H 1.09001 * 109.46416 * 180.80264 * 13 12 11 31 31 H 1.09010 * 109.44950 * 60.83864 * 13 12 11 32 32 H 1.09002 * 109.47043 * 186.04640 * 15 14 13 33 33 H 1.09001 * 109.47354 * 306.04701 * 15 14 13 34 34 H 1.09001 * 109.47630 * 184.99901 * 16 15 14 35 35 H 1.09004 * 109.47346 * 305.00031 * 16 15 14 36 36 H 1.08999 * 109.46799 * 300.00326 * 18 17 16 37 37 H 1.08998 * 109.47187 * 59.99969 * 18 17 16 38 38 H 1.08998 * 110.02031 * 54.29838 * 19 18 17 39 39 H 1.08998 * 110.48698 * 335.78420 * 20 19 18 40 40 H 1.09000 * 110.48128 * 98.43171 * 20 19 18 41 41 H 1.08998 * 110.71634 * 279.57593 * 21 20 19 42 42 H 1.09000 * 110.92303 * 156.29718 * 21 20 19 43 43 H 1.09000 * 110.48461 * 203.40268 * 22 21 20 44 44 H 1.09001 * 110.48149 * 80.76465 * 22 21 20 45 45 H 1.08997 * 110.03504 * 238.57270 * 23 19 18 46 46 H 1.09001 * 110.02984 * 359.97438 * 23 19 18 47 47 H 1.09004 * 109.46477 * 58.27519 * 24 14 13 48 48 H 1.08993 * 109.46460 * 178.24692 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 1 0.6247 -2.5579 -0.8909 11 6 0.3707 -2.5814 1.2497 12 6 -0.3459 -3.9343 1.2719 13 6 0.6935 -5.0571 1.2388 14 7 1.5095 -4.9350 0.0240 15 6 2.4262 -6.0748 -0.1112 16 6 1.6190 -7.3539 -0.3419 17 8 0.9364 -7.2671 -1.5944 18 6 0.1483 -8.4171 -1.9078 19 6 -0.5325 -8.2149 -3.2631 20 6 -1.5768 -7.0836 -3.1662 21 6 -2.7403 -7.5633 -4.0704 22 6 -2.7817 -9.0871 -3.7958 23 6 -1.2980 -9.4881 -3.6636 24 6 2.2440 -3.6636 0.0033 25 1 -0.4850 0.8401 0.0004 26 1 -0.3668 -1.7789 1.2293 27 1 0.9912 -2.4831 2.1403 28 1 -0.9971 -4.0156 0.4016 29 1 -0.9415 -4.0165 2.1810 30 1 0.1862 -6.0218 1.2402 31 1 1.3357 -4.9833 2.1166 32 1 3.0917 -5.9074 -0.9581 33 1 3.0160 -6.1768 0.7997 34 1 2.2921 -8.2112 -0.3537 35 1 0.8914 -7.4742 0.4607 36 1 0.7906 -9.2966 -1.9519 37 1 -0.6097 -8.5590 -1.1376 38 1 0.2115 -7.9723 -4.0219 39 1 -1.9171 -6.9656 -2.1374 40 1 -1.1618 -6.1482 -3.5414 41 1 -2.5200 -7.3657 -5.1195 42 1 -3.6793 -7.0926 -3.7791 43 1 -3.2461 -9.6126 -4.6302 44 1 -3.3167 -9.2931 -2.8687 45 1 -0.9261 -9.8630 -4.6171 46 1 -1.1841 -10.2503 -2.8927 47 1 2.8789 -3.5965 0.8868 48 1 2.8626 -3.6161 -0.8928 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595622778.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:50 Heat of formation + Delta-G solvation = -72.035391 kcal Electronic energy + Delta-G solvation = -22993.357375 eV Core-core repulsion = 19853.825482 eV Total energy + Delta-G solvation = -3139.531893 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.91880 -38.18708 -36.75481 -33.79119 -31.90315 -30.40816 -29.81023 -28.72024 -27.99852 -24.90787 -24.28242 -23.26791 -21.65590 -20.74187 -20.52846 -19.59115 -18.53517 -16.77457 -16.39243 -15.94728 -15.47727 -15.27469 -14.80477 -14.38928 -14.03131 -13.90459 -13.40394 -13.28522 -13.10141 -12.80168 -12.30460 -12.27836 -11.92708 -11.70890 -11.37230 -11.22915 -11.12442 -11.01311 -10.95840 -10.91136 -10.70443 -10.65062 -10.57955 -10.46899 -10.37896 -10.03363 -9.77452 -9.40193 -9.33229 -8.94259 -8.63003 -8.23994 -7.51825 -5.91533 -3.97434 3.34560 3.40963 3.43931 3.79369 4.43218 4.56291 4.58748 4.61986 4.74208 5.14762 5.20981 5.34156 5.38215 5.39964 5.43129 5.44649 5.50586 5.58723 5.60072 5.71396 5.72010 5.77248 5.81526 5.83396 5.95524 5.97910 6.07725 6.12336 6.15034 6.22329 6.35621 6.39802 6.45160 6.48074 6.59766 6.79001 6.82637 7.05401 7.30124 7.41594 7.50734 7.76516 7.81920 7.93528 8.17121 8.25072 8.55330 9.06807 9.66376 11.14398 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.020065 B = 0.003703 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.111134 B = 7558.830601 C = 8198.948015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.053 0.947 9 C 0.056 3.944 10 H 0.035 0.965 11 C -0.110 4.110 12 C -0.116 4.116 13 C 0.062 3.938 14 N -0.527 5.527 15 C 0.055 3.945 16 C 0.069 3.931 17 O -0.363 6.363 18 C 0.068 3.932 19 C -0.090 4.090 20 C -0.112 4.112 21 C -0.128 4.128 22 C -0.124 4.124 23 C -0.118 4.118 24 C 0.069 3.931 25 H 0.259 0.741 26 H 0.090 0.910 27 H 0.028 0.972 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.019 0.981 32 H 0.078 0.922 33 H 0.039 0.961 34 H 0.042 0.958 35 H 0.046 0.954 36 H 0.039 0.961 37 H 0.044 0.956 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.016 0.984 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.498 -18.919 -3.308 19.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.552 4.552 8 H 0.071 0.929 9 C 0.037 3.963 10 H 0.053 0.947 11 C -0.148 4.148 12 C -0.154 4.154 13 C -0.066 4.066 14 N -0.252 5.252 15 C -0.073 4.073 16 C -0.008 4.008 17 O -0.282 6.282 18 C -0.009 4.009 19 C -0.108 4.108 20 C -0.149 4.149 21 C -0.166 4.166 22 C -0.162 4.162 23 C -0.155 4.155 24 C -0.058 4.058 25 H 0.069 0.931 26 H 0.108 0.892 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.037 0.963 32 H 0.096 0.904 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.034 0.966 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.941 -18.637 -3.826 19.252 hybrid contribution 1.082 0.619 0.984 1.588 sum -1.859 -18.018 -2.843 18.336 Atomic orbital electron populations 1.69897 1.05815 1.26205 1.50792 1.24930 0.94817 0.98885 0.95223 0.86640 0.79829 0.83717 0.78049 1.20722 1.21322 1.20070 1.21165 0.92799 0.90754 1.50523 0.92918 1.18648 0.92627 0.90200 0.94848 0.94701 1.21641 1.00008 0.94718 0.98420 1.21653 0.97192 0.96478 1.00047 1.22068 0.95789 0.98667 0.90097 1.61940 1.23764 1.01878 1.37593 1.22070 0.94278 0.90680 1.00279 1.22547 0.94860 0.97014 0.86392 1.88061 1.63741 1.39161 1.37196 1.22587 0.93573 0.88397 0.96306 1.21733 0.97484 0.95446 0.96170 1.22347 0.94393 0.98049 1.00127 1.22552 0.98926 0.95160 0.99939 1.22355 0.96105 0.96493 1.01241 1.22133 0.95284 0.96956 1.01167 1.22301 0.96367 0.88615 0.98537 0.93131 0.89171 0.95315 0.92061 0.93781 0.92578 0.96262 0.90356 0.94328 0.93998 0.93541 0.94324 0.93812 0.90378 0.91362 0.90915 0.91702 0.91648 0.91963 0.91774 0.91692 0.91935 0.96584 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.75 11.35 55.43 0.63 -25.12 16 2 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.51 -14.37 8.57 -34.44 -0.29 -14.67 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.06 1.43 2.26 -91.69 -0.21 1.22 16 10 H 0.03 1.00 8.14 -51.93 -0.42 0.58 16 11 C -0.11 -2.67 5.02 -26.61 -0.13 -2.80 16 12 C -0.12 -2.35 6.09 -26.65 -0.16 -2.51 16 13 C 0.06 1.13 5.30 -3.83 -0.02 1.11 16 14 N -0.53 -10.18 4.60 -234.67 -1.08 -11.26 16 15 C 0.06 0.87 5.34 -3.83 -0.02 0.85 16 16 C 0.07 0.94 6.00 37.16 0.22 1.17 16 17 O -0.36 -5.55 10.13 -35.23 -0.36 -5.90 16 18 C 0.07 0.82 4.98 37.16 0.19 1.00 16 19 C -0.09 -1.01 3.19 -89.50 -0.29 -1.30 16 20 C -0.11 -1.38 6.22 -25.03 -0.16 -1.54 16 21 C -0.13 -1.30 6.91 -24.70 -0.17 -1.47 16 22 C -0.12 -1.09 6.83 -25.07 -0.17 -1.26 16 23 C -0.12 -1.05 6.46 -25.62 -0.17 -1.22 16 24 C 0.07 1.51 4.68 -3.83 -0.02 1.50 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.09 2.44 6.15 -51.93 -0.32 2.12 16 27 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.91 6.13 -51.93 -0.32 0.59 16 31 H 0.02 0.35 8.14 -51.92 -0.42 -0.07 16 32 H 0.08 1.24 7.98 -51.93 -0.41 0.82 16 33 H 0.04 0.56 8.12 -51.93 -0.42 0.14 16 34 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.62 6.23 -51.93 -0.32 0.30 16 36 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.04 0.51 8.02 -51.93 -0.42 0.09 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.91 7.77 -51.93 -0.40 0.51 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.51 7.67 -51.93 -0.40 0.11 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.06 1.29 8.01 -51.93 -0.42 0.87 16 LS Contribution 364.37 15.07 5.49 5.49 Total: -1.00 -29.20 364.37 -11.14 -40.34 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -9.32 Total: -1.82 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: -1.49 Total: -18.27 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: -0.45 Total: -36.38 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.36 Total: -5.90 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.20 -11.14 -40.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595622778.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.693 kcal (2) G-P(sol) polarization free energy of solvation -29.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds