Wall clock time and date at job start Tue Mar 31 2020 05:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00314 * 2 1 4 4 H 1.48499 * 109.47272 * 265.08623 * 3 2 1 5 5 H 1.48504 * 109.47037 * 25.08489 * 3 2 1 6 6 H 1.48498 * 109.47286 * 145.08139 * 3 2 1 7 7 C 1.37883 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00108 * 2.68889 * 7 2 1 9 9 C 1.50697 * 120.00046 * 182.68706 * 7 2 1 10 10 H 1.09001 * 109.50270 * 335.02583 * 9 7 2 11 11 C 1.53119 * 109.50189 * 95.09630 * 9 7 2 12 12 C 1.53124 * 109.16283 * 177.59749 * 11 9 7 13 13 C 1.53045 * 109.30424 * 302.32873 * 12 11 9 14 14 N 1.46931 * 109.48094 * 59.16225 * 13 12 11 15 15 C 1.46897 * 110.98576 * 174.17852 * 14 13 12 16 16 C 1.53001 * 109.46869 * 200.00643 * 15 14 13 17 17 O 1.42897 * 109.47269 * 63.97408 * 16 15 14 18 18 C 1.42903 * 113.99966 * 180.02562 * 17 16 15 19 19 C 1.53003 * 109.46982 * 179.97438 * 18 17 16 20 20 C 1.54261 * 110.03104 * 292.16514 * 19 18 17 21 21 C 1.54892 * 104.19686 * 217.10649 * 20 19 18 22 22 C 1.54896 * 102.74544 * 37.94358 * 21 20 19 23 23 C 1.53876 * 110.03083 * 174.99884 * 19 18 17 24 24 C 1.46847 * 111.21661 * 298.27848 * 14 13 12 25 25 H 0.96997 * 119.99702 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.52286 * 57.69176 * 11 9 7 27 27 H 1.08997 * 109.58164 * 297.53472 * 11 9 7 28 28 H 1.09000 * 109.50098 * 62.28402 * 12 11 9 29 29 H 1.08999 * 109.50351 * 182.37204 * 12 11 9 30 30 H 1.09005 * 109.45562 * 179.21284 * 13 12 11 31 31 H 1.08993 * 109.46386 * 299.17956 * 13 12 11 32 32 H 1.09007 * 109.46614 * 320.00133 * 15 14 13 33 33 H 1.09002 * 109.47319 * 80.00276 * 15 14 13 34 34 H 1.09004 * 109.46936 * 183.96763 * 16 15 14 35 35 H 1.08993 * 109.47087 * 303.97051 * 16 15 14 36 36 H 1.08998 * 109.47132 * 300.00049 * 18 17 16 37 37 H 1.08998 * 109.46743 * 59.99793 * 18 17 16 38 38 H 1.08998 * 110.01594 * 53.60923 * 19 18 17 39 39 H 1.08994 * 110.49179 * 335.78353 * 20 19 18 40 40 H 1.09001 * 110.49074 * 98.43158 * 20 19 18 41 41 H 1.09003 * 110.75407 * 279.63249 * 21 20 19 42 42 H 1.08999 * 110.75809 * 156.26120 * 21 20 19 43 43 H 1.09002 * 110.48109 * 203.37652 * 22 21 20 44 44 H 1.08996 * 110.48426 * 80.74200 * 22 21 20 45 45 H 1.08995 * 110.03197 * 238.56794 * 23 19 18 46 46 H 1.09003 * 110.03221 * 359.95603 * 23 19 18 47 47 H 1.09003 * 109.46407 * 301.72940 * 24 14 13 48 48 H 1.09001 * 109.45360 * 181.75761 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6006 1.9864 -1.3949 5 1 1.3986 2.6804 0.5936 6 1 3.4909 1.4723 0.8014 7 6 2.0045 -1.1941 -0.0005 8 1 1.4654 -2.1289 -0.0448 9 6 3.5102 -1.1949 0.0606 10 1 3.8910 -0.2536 -0.3357 11 6 3.9627 -1.3577 1.5144 12 6 5.4920 -1.4178 1.5611 13 6 5.9798 -2.5749 0.6861 14 7 5.5212 -2.3720 -0.6949 15 6 6.0855 -3.3896 -1.5915 16 6 6.0173 -2.8907 -3.0363 17 8 6.8414 -1.7321 -3.1796 18 6 6.8482 -1.1832 -4.4990 19 6 7.7577 0.0466 -4.5350 20 6 7.1404 1.1851 -3.6970 21 6 7.4830 2.4701 -4.4910 22 6 7.3226 2.0152 -5.9630 23 6 7.8736 0.5744 -5.9758 24 6 4.0548 -2.3582 -0.7713 25 1 -0.4849 0.8400 -0.0004 26 1 3.5492 -2.2796 1.9235 27 1 3.6134 -0.5093 2.1029 28 1 5.9046 -0.4804 1.1880 29 1 5.8188 -1.5759 2.5889 30 1 7.0691 -2.6112 0.7065 31 1 5.5781 -3.5134 1.0679 32 1 7.1246 -3.5767 -1.3204 33 1 5.5138 -4.3130 -1.4986 34 1 6.3706 -3.6731 -3.7079 35 1 4.9869 -2.6366 -3.2846 36 1 7.2183 -1.9301 -5.2013 37 1 5.8348 -0.8936 -4.7771 38 1 8.7451 -0.2083 -4.1502 39 1 6.0603 1.0604 -3.6208 40 1 7.5924 1.2174 -2.7056 41 1 8.5078 2.7846 -4.2934 42 1 6.7802 3.2691 -4.2548 43 1 7.9077 2.6533 -6.6253 44 1 6.2719 2.0245 -6.2528 45 1 8.9173 0.5765 -6.2898 46 1 7.2825 -0.0461 -6.6494 47 1 3.6620 -3.2977 -0.3827 48 1 3.7465 -2.2375 -1.8099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595622780.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:52 Heat of formation + Delta-G solvation = -73.729788 kcal Electronic energy + Delta-G solvation = -23314.584637 eV Core-core repulsion = 20174.979269 eV Total energy + Delta-G solvation = -3139.605368 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.90191 -38.30254 -36.77746 -33.74891 -32.23394 -30.42856 -30.18035 -28.71844 -28.13474 -25.00656 -24.26635 -23.52705 -21.24012 -20.91884 -20.65955 -19.58376 -18.72193 -16.90961 -16.63009 -16.04612 -15.52551 -15.28150 -14.86416 -14.32227 -14.09108 -13.93418 -13.44756 -13.34937 -13.12960 -12.90501 -12.48184 -12.45462 -12.04896 -12.01002 -11.45776 -11.24762 -11.17360 -11.05579 -10.99289 -10.93937 -10.87908 -10.66581 -10.58195 -10.51169 -10.37192 -10.12438 -9.75369 -9.46351 -9.30707 -9.21080 -8.86879 -8.47001 -7.66695 -6.03540 -4.02694 3.35784 3.42923 3.49050 3.83084 4.41582 4.48621 4.58926 4.61095 4.76761 5.19344 5.24636 5.28584 5.35842 5.40783 5.46211 5.49449 5.55850 5.60958 5.61357 5.64494 5.71992 5.74854 5.75647 5.83162 5.86792 5.92582 5.99487 6.06092 6.09218 6.10532 6.25006 6.25827 6.38063 6.39647 6.47821 6.48421 6.57609 6.76242 6.91136 6.98234 7.36975 7.47121 7.54613 7.67461 7.74192 7.94768 8.57785 9.01087 9.60792 11.09762 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013019 B = 0.005509 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.262085 B = 5081.814342 C = 6302.413954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.072 3.928 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.262 1.262 7 C -0.511 4.511 8 H 0.070 0.930 9 C 0.022 3.978 10 H 0.039 0.961 11 C -0.112 4.112 12 C -0.120 4.120 13 C 0.065 3.935 14 N -0.533 5.533 15 C 0.058 3.942 16 C 0.070 3.930 17 O -0.367 6.367 18 C 0.067 3.933 19 C -0.088 4.088 20 C -0.113 4.113 21 C -0.128 4.128 22 C -0.125 4.125 23 C -0.118 4.118 24 C 0.072 3.928 25 H 0.263 0.737 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.024 0.976 32 H 0.072 0.928 33 H 0.044 0.956 34 H 0.042 0.958 35 H 0.052 0.948 36 H 0.039 0.961 37 H 0.047 0.953 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.021 0.979 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.833 -1.490 -8.901 19.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.129 4.129 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.187 1.187 7 C -0.549 4.549 8 H 0.088 0.912 9 C 0.002 3.998 10 H 0.057 0.943 11 C -0.150 4.150 12 C -0.158 4.158 13 C -0.063 4.063 14 N -0.257 5.257 15 C -0.071 4.071 16 C -0.008 4.008 17 O -0.285 6.285 18 C -0.009 4.009 19 C -0.107 4.107 20 C -0.151 4.151 21 C -0.166 4.166 22 C -0.162 4.162 23 C -0.155 4.155 24 C -0.055 4.055 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.039 0.961 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 16.938 -0.848 -8.902 19.154 hybrid contribution -0.179 -0.095 0.020 0.203 sum 16.759 -0.943 -8.882 18.991 Atomic orbital electron populations 1.69910 1.06355 1.26914 1.50991 1.25038 0.94645 0.98999 0.94259 0.86840 0.80224 0.83451 0.78926 1.20189 1.21904 1.18678 1.20984 0.88978 0.94369 1.50615 0.91212 1.19119 0.95683 0.94300 0.90663 0.94305 1.21866 0.92025 1.00701 1.00456 1.21673 0.98423 0.98340 0.97315 1.21991 0.98548 0.97065 0.88663 1.61988 1.10574 1.46761 1.06420 1.22044 0.99988 0.92922 0.92138 1.22504 0.94661 0.87238 0.96353 1.87985 1.67827 1.44256 1.28471 1.22602 0.98818 0.94474 0.85056 1.21717 0.99314 0.94275 0.95358 1.22355 1.01442 0.92801 0.98493 1.22543 1.01171 0.97975 0.94907 1.22360 1.01036 0.95803 0.97047 1.22133 1.00984 0.96425 0.95998 1.22281 0.83698 0.98786 1.00696 0.92755 0.93339 0.93047 0.91966 0.93068 0.92077 0.95823 0.90949 0.93771 0.93981 0.92986 0.94289 0.93461 0.90550 0.91087 0.91263 0.91784 0.91642 0.91953 0.91602 0.91744 0.91805 0.96064 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.79 13.96 55.43 0.77 -27.01 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 22.13 26.88 -169.99 -4.57 17.56 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.26 -6.40 6.79 56.52 0.38 -6.01 16 7 C -0.51 -14.39 8.87 -34.44 -0.31 -14.69 16 8 H 0.07 2.13 8.06 -52.49 -0.42 1.70 16 9 C 0.02 0.52 1.89 -91.70 -0.17 0.35 16 10 H 0.04 0.98 5.39 -51.93 -0.28 0.70 16 11 C -0.11 -2.43 5.27 -26.61 -0.14 -2.57 16 12 C -0.12 -2.16 6.09 -26.64 -0.16 -2.32 16 13 C 0.07 1.09 5.43 -3.78 -0.02 1.07 16 14 N -0.53 -9.64 4.52 -234.59 -1.06 -10.70 16 15 C 0.06 0.85 5.39 -3.82 -0.02 0.83 16 16 C 0.07 1.00 6.12 37.16 0.23 1.22 16 17 O -0.37 -5.69 10.13 -35.23 -0.36 -6.05 16 18 C 0.07 0.87 4.99 37.16 0.19 1.05 16 19 C -0.09 -1.04 3.19 -89.50 -0.29 -1.32 16 20 C -0.11 -1.49 6.22 -25.07 -0.16 -1.65 16 21 C -0.13 -1.40 6.91 -24.73 -0.17 -1.57 16 22 C -0.12 -1.22 6.83 -25.07 -0.17 -1.39 16 23 C -0.12 -1.13 6.46 -25.61 -0.17 -1.30 16 24 C 0.07 1.51 4.56 -3.84 -0.02 1.49 16 25 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.05 1.16 7.98 -51.93 -0.41 0.74 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.91 7.93 -51.93 -0.41 0.50 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.99 7.79 -51.93 -0.40 0.58 16 33 H 0.04 0.62 8.00 -51.93 -0.42 0.20 16 34 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.80 6.72 -51.93 -0.35 0.45 16 36 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.05 0.63 8.00 -51.93 -0.42 0.22 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.07 7.76 -51.93 -0.40 0.67 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.58 7.67 -51.93 -0.40 0.18 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.06 1.38 6.66 -51.93 -0.35 1.03 16 LS Contribution 364.44 15.07 5.49 5.49 Total: -1.00 -30.35 364.44 -10.53 -40.88 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -9.33 Total: -1.37 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -1.47 Total: -18.80 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: -0.29 Total: -37.72 kcal Atomic # 8 Polarization: -5.69 SS G_CDS: -0.36 Total: -6.05 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.57 Total: 17.56 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.35 -10.53 -40.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595622780.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.854 kcal (2) G-P(sol) polarization free energy of solvation -30.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds