Wall clock time and date at job start Tue Mar 31 2020 05:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99695 * 2 1 4 4 H 1.48497 * 109.47149 * 269.99646 * 3 2 1 5 5 H 1.48504 * 109.47101 * 29.99967 * 3 2 1 6 6 H 1.48493 * 109.47009 * 149.99782 * 3 2 1 7 7 C 1.37872 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99884 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00039 * 180.02562 * 7 2 1 10 10 H 1.08999 * 109.53881 * 60.09226 * 9 7 2 11 11 C 1.53124 * 109.50007 * 299.99707 * 9 7 2 12 12 C 1.53126 * 109.15878 * 182.40592 * 11 9 7 13 13 C 1.53037 * 109.27801 * 57.65645 * 12 11 9 14 14 N 1.46854 * 109.51886 * 300.81620 * 13 12 11 15 15 C 1.46897 * 110.99665 * 185.84309 * 14 13 12 16 16 C 1.52998 * 109.47268 * 293.95495 * 15 14 13 17 17 C 1.53001 * 109.47409 * 180.02562 * 16 15 14 18 18 C 1.52998 * 109.47409 * 180.02562 * 17 16 15 19 19 C 1.53181 * 109.54482 * 294.55824 * 18 17 16 20 20 C 1.53090 * 109.16348 * 183.15191 * 19 18 17 21 21 O 1.42907 * 109.41478 * 57.60884 * 20 19 18 22 22 C 1.42898 * 114.09667 * 298.83996 * 21 20 19 23 23 C 1.53095 * 109.41683 * 61.15966 * 22 21 20 24 24 C 1.46844 * 111.19703 * 61.74789 * 14 13 12 25 25 H 0.96998 * 120.00706 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.52745 * 62.49921 * 11 9 7 27 27 H 1.08999 * 109.52030 * 302.30376 * 11 9 7 28 28 H 1.09000 * 109.49775 * 177.59563 * 12 11 9 29 29 H 1.09002 * 109.50346 * 297.67261 * 12 11 9 30 30 H 1.08994 * 109.46593 * 60.83220 * 13 12 11 31 31 H 1.09004 * 109.45972 * 180.81661 * 13 12 11 32 32 H 1.08998 * 109.47712 * 53.95369 * 15 14 13 33 33 H 1.09003 * 109.47441 * 173.95685 * 15 14 13 34 34 H 1.08999 * 109.47139 * 300.00315 * 16 15 14 35 35 H 1.09004 * 109.47207 * 59.99992 * 16 15 14 36 36 H 1.08999 * 109.47199 * 300.00243 * 17 16 15 37 37 H 1.09004 * 109.46972 * 59.99813 * 17 16 15 38 38 H 1.08999 * 109.54279 * 54.82265 * 18 17 16 39 39 H 1.09007 * 109.52138 * 303.05727 * 19 18 17 40 40 H 1.08996 * 109.52203 * 63.24122 * 19 18 17 41 41 H 1.08996 * 109.48177 * 297.62267 * 20 19 18 42 42 H 1.09007 * 109.48021 * 177.59184 * 20 19 18 43 43 H 1.09006 * 109.48105 * 301.17944 * 22 21 20 44 44 H 1.08994 * 109.47901 * 181.14590 * 22 21 20 45 45 H 1.09001 * 109.52008 * 182.48770 * 23 22 21 46 46 H 1.08999 * 109.52225 * 62.29588 * 23 22 21 47 47 H 1.09002 * 109.46133 * 58.27161 * 24 14 13 48 48 H 1.09002 * 109.46165 * 178.24800 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8757 -0.6824 0.8910 11 6 4.0231 -0.4715 -1.2493 12 6 5.5532 -0.5284 -1.2716 13 6 6.0049 -1.9902 -1.2405 14 7 5.4908 -2.6369 -0.0263 15 6 6.0188 -4.0012 0.1072 16 6 5.4749 -4.8719 -1.0272 17 6 6.0243 -6.2930 -0.8877 18 6 5.4809 -7.1636 -2.0225 19 6 3.9634 -7.3106 -1.8739 20 6 3.4399 -8.2464 -2.9666 21 8 4.1028 -9.5086 -2.8689 22 6 5.5189 -9.4392 -3.0471 23 6 6.1261 -8.5514 -1.9577 24 6 4.0225 -2.6365 -0.0056 25 1 -0.4851 0.8400 -0.0004 26 1 3.6976 0.5685 -1.2278 27 1 3.6275 -0.9596 -2.1400 28 1 5.9217 -0.0528 -2.1805 29 1 5.9495 -0.0057 -0.4010 30 1 5.6198 -2.5082 -2.1187 31 1 7.0941 -2.0338 -1.2416 32 1 7.1073 -3.9762 0.0561 33 1 5.7096 -4.4183 1.0656 34 1 4.3864 -4.8969 -0.9761 35 1 5.7841 -4.4548 -1.9856 36 1 7.1128 -6.2684 -0.9385 37 1 5.7147 -6.7098 0.0707 38 1 5.7114 -6.6987 -2.9811 39 1 3.7322 -7.7291 -0.8943 40 1 3.4913 -6.3334 -1.9742 41 1 3.6354 -7.8079 -3.9451 42 1 2.3666 -8.3886 -2.8398 43 1 5.7417 -9.0162 -4.0267 44 1 5.9434 -10.4407 -2.9784 45 1 7.2005 -8.4614 -2.1180 46 1 5.9385 -8.9949 -0.9798 47 1 3.6467 -3.1515 -0.8897 48 1 3.6718 -3.1493 0.8900 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595623668.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:20 Heat of formation + Delta-G solvation = -71.876116 kcal Electronic energy + Delta-G solvation = -23098.775820 eV Core-core repulsion = 19959.250834 eV Total energy + Delta-G solvation = -3139.524986 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.70744 -38.71797 -35.94913 -34.03697 -32.33452 -31.31826 -30.46791 -30.27444 -26.66492 -24.94596 -24.32233 -23.65340 -22.14217 -21.39857 -20.74618 -20.15515 -18.51980 -16.71498 -16.34777 -16.20226 -15.60888 -15.35187 -14.88001 -14.57914 -14.44740 -14.16855 -13.81190 -13.55827 -13.38605 -12.92569 -12.81555 -12.57173 -12.28618 -12.09558 -11.81983 -11.64553 -11.55134 -11.42432 -11.13019 -11.07372 -10.98331 -10.69694 -10.48319 -10.41435 -10.18054 -10.04405 -9.90231 -9.71335 -9.60269 -9.08449 -8.90973 -8.49724 -7.71947 -6.05434 -4.04357 3.29560 3.40934 3.44620 3.69288 4.37541 4.44129 4.51571 4.52854 4.66060 4.82548 4.98637 5.06160 5.17894 5.23594 5.26423 5.28089 5.41728 5.44402 5.48360 5.53729 5.55468 5.61734 5.69547 5.78688 5.82173 5.85784 5.88344 5.94497 5.97990 6.05412 6.14196 6.19631 6.26960 6.29972 6.39143 6.40513 6.54383 6.64029 6.83537 6.86054 7.00143 7.23184 7.44211 7.65863 7.68058 7.89580 8.54019 8.97679 9.57716 11.07848 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022958 B = 0.003719 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.329506 B = 7527.073346 C = 8327.272323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.070 3.930 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.263 1.263 7 C -0.513 4.513 8 H 0.072 0.928 9 C 0.019 3.981 10 H 0.034 0.966 11 C -0.122 4.122 12 C -0.121 4.121 13 C 0.062 3.938 14 N -0.541 5.541 15 C 0.057 3.943 16 C -0.161 4.161 17 C -0.107 4.107 18 C -0.089 4.089 19 C -0.153 4.153 20 C 0.059 3.941 21 O -0.386 6.386 22 C 0.060 3.940 23 C -0.151 4.151 24 C 0.076 3.924 25 H 0.263 0.737 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.029 0.971 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.049 0.951 42 H 0.094 0.906 43 H 0.048 0.952 44 H 0.090 0.910 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.029 0.971 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.192 -14.391 -5.392 20.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.227 1.227 6 H -0.188 1.188 7 C -0.552 4.552 8 H 0.090 0.910 9 C 0.000 4.000 10 H 0.052 0.948 11 C -0.159 4.159 12 C -0.159 4.159 13 C -0.066 4.066 14 N -0.264 5.264 15 C -0.071 4.071 16 C -0.200 4.200 17 C -0.145 4.145 18 C -0.108 4.108 19 C -0.191 4.191 20 C -0.017 4.017 21 O -0.305 6.305 22 C -0.017 4.017 23 C -0.189 4.189 24 C -0.051 4.051 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.067 0.933 42 H 0.112 0.888 43 H 0.066 0.934 44 H 0.108 0.892 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.047 0.953 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.093 -14.165 -4.938 20.582 hybrid contribution 0.208 0.809 -0.862 1.201 sum 14.300 -13.356 -5.800 20.409 Atomic orbital electron populations 1.69900 1.06300 1.26908 1.51028 1.24983 0.94656 0.99042 0.94434 0.86825 0.80021 0.83480 0.77816 1.20770 1.22663 1.18821 1.21005 0.88839 0.94434 1.50875 0.91015 1.19170 0.95901 0.91330 0.93629 0.94786 1.22017 0.92643 1.00164 1.01102 1.21666 0.98095 0.95376 1.00716 1.21978 0.98289 0.95257 0.91041 1.62222 1.10471 1.16195 1.37499 1.22174 0.99077 0.88061 0.97820 1.22344 1.02125 0.95227 1.00326 1.21534 0.99967 0.94844 0.98125 1.21217 0.95031 0.94981 0.99555 1.22298 0.95861 1.00719 1.00191 1.22617 0.97268 0.84207 0.97620 1.87921 1.19326 1.30021 1.93192 1.22562 0.81529 1.00350 0.97229 1.22256 1.00206 0.95998 1.00401 1.22085 0.83922 0.99401 0.99683 0.92720 0.93624 0.92666 0.92941 0.91897 0.95259 0.92135 0.91694 0.91093 0.90961 0.92163 0.92159 0.91861 0.91313 0.90947 0.90239 0.93305 0.88782 0.93418 0.89154 0.91062 0.91019 0.95260 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 2 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 3 Si 0.89 22.26 24.35 -169.99 -4.14 18.12 16 4 H -0.28 -6.85 6.89 56.52 0.39 -6.46 16 5 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.26 -6.38 6.53 56.52 0.37 -6.01 16 7 C -0.51 -14.37 9.15 -34.44 -0.32 -14.69 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C 0.02 0.45 1.85 -91.69 -0.17 0.28 16 10 H 0.03 0.85 7.21 -51.93 -0.37 0.48 16 11 C -0.12 -2.64 4.73 -26.60 -0.13 -2.77 16 12 C -0.12 -2.14 6.09 -26.65 -0.16 -2.30 16 13 C 0.06 0.99 5.05 -3.83 -0.02 0.98 16 14 N -0.54 -9.23 4.86 -234.67 -1.14 -10.37 16 15 C 0.06 0.78 5.36 -3.83 -0.02 0.76 16 16 C -0.16 -1.98 4.28 -26.73 -0.11 -2.09 16 17 C -0.11 -1.06 4.69 -26.73 -0.13 -1.19 16 18 C -0.09 -0.86 2.27 -90.43 -0.21 -1.06 16 19 C -0.15 -1.61 5.10 -26.59 -0.14 -1.74 16 20 C 0.06 0.61 6.84 37.20 0.25 0.86 16 21 O -0.39 -4.37 10.77 -35.23 -0.38 -4.75 16 22 C 0.06 0.53 6.84 37.21 0.25 0.78 16 23 C -0.15 -1.28 5.42 -26.59 -0.14 -1.42 16 24 C 0.08 1.52 4.06 -3.84 -0.02 1.51 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.05 1.05 3.34 -51.93 -0.17 0.88 16 27 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.03 0.46 6.75 -51.93 -0.35 0.11 16 31 H 0.06 0.84 8.06 -51.93 -0.42 0.42 16 32 H 0.06 0.79 8.06 -51.93 -0.42 0.37 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.07 1.01 5.02 -51.93 -0.26 0.75 16 35 H 0.06 0.76 6.68 -51.93 -0.35 0.42 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.90 6.75 -51.93 -0.35 0.55 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.03 0.59 6.61 -51.93 -0.34 0.25 16 48 H 0.06 1.32 8.12 -51.93 -0.42 0.90 16 LS Contribution 348.55 15.07 5.25 5.25 Total: -1.00 -30.19 348.55 -9.75 -39.94 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -8.98 Total: -1.06 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -1.14 Total: -20.18 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: -0.37 Total: -37.33 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: -0.38 Total: -4.75 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.14 Total: 18.12 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.19 -9.75 -39.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623668.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.938 kcal (2) G-P(sol) polarization free energy of solvation -30.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds