Wall clock time and date at job start Tue Mar 31 2020 05:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99695 * 2 1 4 4 H 1.48497 * 109.47149 * 269.99646 * 3 2 1 5 5 H 1.48504 * 109.47101 * 29.99967 * 3 2 1 6 6 H 1.48493 * 109.47009 * 149.99782 * 3 2 1 7 7 C 1.37872 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99884 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00039 * 180.02562 * 7 2 1 10 10 H 1.08999 * 109.53881 * 60.09226 * 9 7 2 11 11 C 1.53124 * 109.50007 * 299.99707 * 9 7 2 12 12 C 1.53126 * 109.15878 * 182.40592 * 11 9 7 13 13 C 1.53037 * 109.27801 * 57.65645 * 12 11 9 14 14 N 1.46854 * 109.51886 * 300.81620 * 13 12 11 15 15 C 1.46897 * 110.99665 * 185.84309 * 14 13 12 16 16 C 1.52998 * 109.47268 * 293.95495 * 15 14 13 17 17 C 1.53001 * 109.47409 * 180.02562 * 16 15 14 18 18 C 1.52998 * 109.47409 * 180.02562 * 17 16 15 19 19 C 1.53181 * 109.54482 * 294.55824 * 18 17 16 20 20 C 1.53090 * 109.16348 * 183.15191 * 19 18 17 21 21 O 1.42907 * 109.41478 * 57.60884 * 20 19 18 22 22 C 1.42898 * 114.09667 * 298.83996 * 21 20 19 23 23 C 1.53095 * 109.41683 * 61.15966 * 22 21 20 24 24 C 1.46844 * 111.19703 * 61.74789 * 14 13 12 25 25 H 0.96998 * 120.00706 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.52745 * 62.49921 * 11 9 7 27 27 H 1.08999 * 109.52030 * 302.30376 * 11 9 7 28 28 H 1.09000 * 109.49775 * 177.59563 * 12 11 9 29 29 H 1.09002 * 109.50346 * 297.67261 * 12 11 9 30 30 H 1.08994 * 109.46593 * 60.83220 * 13 12 11 31 31 H 1.09004 * 109.45972 * 180.81661 * 13 12 11 32 32 H 1.08998 * 109.47712 * 53.95369 * 15 14 13 33 33 H 1.09003 * 109.47441 * 173.95685 * 15 14 13 34 34 H 1.08999 * 109.47139 * 300.00315 * 16 15 14 35 35 H 1.09004 * 109.47207 * 59.99992 * 16 15 14 36 36 H 1.08999 * 109.47199 * 300.00243 * 17 16 15 37 37 H 1.09004 * 109.46972 * 59.99813 * 17 16 15 38 38 H 1.08999 * 109.54279 * 54.82265 * 18 17 16 39 39 H 1.09007 * 109.52138 * 303.05727 * 19 18 17 40 40 H 1.08996 * 109.52203 * 63.24122 * 19 18 17 41 41 H 1.08996 * 109.48177 * 297.62267 * 20 19 18 42 42 H 1.09007 * 109.48021 * 177.59184 * 20 19 18 43 43 H 1.09006 * 109.48105 * 301.17944 * 22 21 20 44 44 H 1.08994 * 109.47901 * 181.14590 * 22 21 20 45 45 H 1.09001 * 109.52008 * 182.48770 * 23 22 21 46 46 H 1.08999 * 109.52225 * 62.29588 * 23 22 21 47 47 H 1.09002 * 109.46133 * 58.27161 * 24 14 13 48 48 H 1.09002 * 109.46165 * 178.24800 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8757 -0.6824 0.8910 11 6 4.0231 -0.4715 -1.2493 12 6 5.5532 -0.5284 -1.2716 13 6 6.0049 -1.9902 -1.2405 14 7 5.4908 -2.6369 -0.0263 15 6 6.0188 -4.0012 0.1072 16 6 5.4749 -4.8719 -1.0272 17 6 6.0243 -6.2930 -0.8877 18 6 5.4809 -7.1636 -2.0225 19 6 3.9634 -7.3106 -1.8739 20 6 3.4399 -8.2464 -2.9666 21 8 4.1028 -9.5086 -2.8689 22 6 5.5189 -9.4392 -3.0471 23 6 6.1261 -8.5514 -1.9577 24 6 4.0225 -2.6365 -0.0056 25 1 -0.4851 0.8400 -0.0004 26 1 3.6976 0.5685 -1.2278 27 1 3.6275 -0.9596 -2.1400 28 1 5.9217 -0.0528 -2.1805 29 1 5.9495 -0.0057 -0.4010 30 1 5.6198 -2.5082 -2.1187 31 1 7.0941 -2.0338 -1.2416 32 1 7.1073 -3.9762 0.0561 33 1 5.7096 -4.4183 1.0656 34 1 4.3864 -4.8969 -0.9761 35 1 5.7841 -4.4548 -1.9856 36 1 7.1128 -6.2684 -0.9385 37 1 5.7147 -6.7098 0.0707 38 1 5.7114 -6.6987 -2.9811 39 1 3.7322 -7.7291 -0.8943 40 1 3.4913 -6.3334 -1.9742 41 1 3.6354 -7.8079 -3.9451 42 1 2.3666 -8.3886 -2.8398 43 1 5.7417 -9.0162 -4.0267 44 1 5.9434 -10.4407 -2.9784 45 1 7.2005 -8.4614 -2.1180 46 1 5.9385 -8.9949 -0.9798 47 1 3.6467 -3.1515 -0.8897 48 1 3.6718 -3.1493 0.8900 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595623668.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:19 Heat of formation + Delta-G solvation = -91.081085 kcal Electronic energy + Delta-G solvation = -23099.608610 eV Core-core repulsion = 19959.250834 eV Total energy + Delta-G solvation = -3140.357776 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.58402 -40.03582 -37.01294 -35.52089 -34.11928 -32.11577 -31.99492 -31.55550 -27.75015 -26.86735 -25.43816 -24.48677 -23.29965 -22.81439 -22.10127 -20.93011 -20.04393 -18.81850 -17.31207 -17.03756 -16.96496 -16.38671 -15.88355 -15.84904 -15.59020 -15.55782 -15.15641 -14.94533 -14.62533 -14.53598 -14.09619 -13.94155 -13.51928 -13.21881 -12.95662 -12.84379 -12.74290 -12.60578 -12.50049 -12.26474 -12.22115 -11.89971 -11.79781 -11.78035 -11.49832 -11.38572 -11.17973 -11.11038 -10.98401 -10.79774 -10.60841 -10.45211 -9.05485 -8.30929 -6.34272 1.28952 1.35618 1.46892 2.32322 2.95911 3.04989 3.13709 3.66217 3.74286 3.89933 4.03951 4.06293 4.08557 4.14249 4.24154 4.27691 4.35153 4.42741 4.49716 4.51740 4.58110 4.61904 4.70270 4.75064 4.77404 4.78679 4.84766 4.88398 4.93388 4.97998 5.02737 5.06444 5.10532 5.11960 5.17035 5.18404 5.23550 5.32554 5.43625 5.46660 5.50420 5.64307 5.74006 6.18928 6.25387 6.33052 6.39229 6.73366 7.31572 8.85999 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022958 B = 0.003719 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.329506 B = 7527.073346 C = 8327.272323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.013 3.987 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.300 1.300 6 H -0.249 1.249 7 C -0.519 4.519 8 H 0.031 0.969 9 C 0.018 3.982 10 H 0.022 0.978 11 C -0.121 4.121 12 C -0.116 4.116 13 C 0.063 3.937 14 N -0.549 5.549 15 C 0.058 3.942 16 C -0.153 4.153 17 C -0.098 4.098 18 C -0.087 4.087 19 C -0.152 4.152 20 C 0.059 3.941 21 O -0.406 6.406 22 C 0.053 3.947 23 C -0.145 4.145 24 C 0.091 3.909 25 H 0.265 0.735 26 H 0.033 0.967 27 H 0.047 0.953 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.032 0.968 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.094 0.906 43 H 0.056 0.944 44 H 0.106 0.894 45 H 0.091 0.909 46 H 0.066 0.934 47 H 0.021 0.979 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.801 -14.387 -6.200 23.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.184 4.184 3 Si 0.779 3.221 4 H -0.193 1.193 5 H -0.228 1.228 6 H -0.173 1.173 7 C -0.557 4.557 8 H 0.050 0.950 9 C -0.001 4.001 10 H 0.040 0.960 11 C -0.159 4.159 12 C -0.154 4.154 13 C -0.065 4.065 14 N -0.272 5.272 15 C -0.070 4.070 16 C -0.192 4.192 17 C -0.137 4.137 18 C -0.106 4.106 19 C -0.190 4.190 20 C -0.018 4.018 21 O -0.325 6.325 22 C -0.023 4.023 23 C -0.183 4.183 24 C -0.037 4.037 25 H 0.074 0.926 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.112 0.888 43 H 0.074 0.926 44 H 0.124 0.876 45 H 0.109 0.891 46 H 0.084 0.916 47 H 0.039 0.961 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 17.731 -14.183 -5.751 23.423 hybrid contribution -0.965 0.702 -0.596 1.334 sum 16.767 -13.480 -6.347 22.430 Atomic orbital electron populations 1.70048 1.08175 1.27988 1.52923 1.25845 0.95393 1.02965 0.94206 0.85787 0.79046 0.78637 0.78613 1.19270 1.22766 1.17269 1.21342 0.91560 0.92910 1.49907 0.95020 1.19089 0.92834 0.93920 0.94254 0.96030 1.21910 0.96059 0.98691 0.99250 1.21652 0.94484 0.97068 1.02189 1.22057 1.00118 0.93850 0.90479 1.62161 1.07882 1.18662 1.38516 1.22262 1.00350 0.86267 0.98119 1.22225 1.00561 0.96609 0.99791 1.21466 1.00908 0.93184 0.98098 1.21202 0.94076 0.95855 0.99462 1.22260 0.96982 0.99899 0.99850 1.22629 0.97389 0.84031 0.97740 1.87894 1.20901 1.30392 1.93348 1.22774 0.80270 1.01518 0.97751 1.22217 1.01198 0.94829 1.00036 1.21725 0.86527 0.96705 0.98754 0.92583 0.94859 0.93438 0.90025 0.91967 0.95002 0.88770 0.89074 0.91368 0.93461 0.92081 0.90257 0.92143 0.91140 0.91914 0.91689 0.92659 0.88796 0.92601 0.87593 0.89059 0.91558 0.96058 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.47 13.96 21.45 0.30 -60.17 16 2 C 0.01 0.75 5.45 84.65 0.46 1.22 16 3 Si 0.95 46.23 24.35 68.60 1.67 47.90 16 4 H -0.27 -12.27 6.89 99.48 0.69 -11.58 16 5 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 6 H -0.25 -11.37 6.53 99.48 0.65 -10.72 16 7 C -0.52 -30.18 9.15 25.60 0.23 -29.95 16 8 H 0.03 2.03 7.99 -2.91 -0.02 2.00 16 9 C 0.02 0.87 1.85 -11.49 -0.02 0.84 16 10 H 0.02 1.08 7.21 -2.39 -0.02 1.06 16 11 C -0.12 -5.11 4.73 30.68 0.15 -4.97 16 12 C -0.12 -3.73 6.09 30.65 0.19 -3.54 16 13 C 0.06 1.77 5.05 86.32 0.44 2.21 16 14 N -0.55 -17.59 4.86 -896.36 -4.35 -21.94 16 15 C 0.06 1.42 5.36 86.30 0.46 1.88 16 16 C -0.15 -3.50 4.28 30.59 0.13 -3.37 16 17 C -0.10 -1.74 4.69 30.59 0.14 -1.60 16 18 C -0.09 -1.53 2.27 -10.67 -0.02 -1.56 16 19 C -0.15 -3.20 5.10 30.69 0.16 -3.04 16 20 C 0.06 1.19 6.84 72.01 0.49 1.68 16 21 O -0.41 -8.85 10.77 -148.98 -1.60 -10.46 16 22 C 0.05 0.83 6.84 72.01 0.49 1.32 16 23 C -0.15 -2.12 5.42 30.69 0.17 -1.95 16 24 C 0.09 3.66 4.06 86.33 0.35 4.01 16 25 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 26 H 0.03 1.47 3.34 -2.39 -0.01 1.46 16 27 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.03 0.90 6.75 -2.39 -0.02 0.89 16 31 H 0.09 2.11 8.06 -2.38 -0.02 2.10 16 32 H 0.09 1.82 8.06 -2.39 -0.02 1.81 16 33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.05 1.32 5.02 -2.39 -0.01 1.31 16 35 H 0.06 1.40 6.68 -2.38 -0.02 1.38 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 39 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.06 1.53 6.75 -2.39 -0.02 1.52 16 41 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 43 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 44 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.02 0.88 6.61 -2.39 -0.02 0.87 16 48 H 0.05 2.17 8.12 -2.39 -0.02 2.15 16 Total: -1.00 -67.09 348.55 0.64 -66.45 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.82 Total: 15.06 kcal Atomic # 6 Polarization: -40.64 SS G_CDS: 3.81 Total: -36.83 kcal Atomic # 7 Polarization: -78.06 SS G_CDS: -4.06 Total: -82.12 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -1.60 Total: -10.46 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.67 Total: 47.90 kcal Total: -67.09 0.64 -66.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623668.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.628 kcal (2) G-P(sol) polarization free energy of solvation -67.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds