Wall clock time and date at job start Tue Mar 31 2020 05:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99962 * 2 1 4 4 H 1.48498 * 109.46967 * 239.99662 * 3 2 1 5 5 H 1.48503 * 109.46839 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47286 * 119.99522 * 3 2 1 7 7 C 1.37880 * 120.00428 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00018 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99487 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.51136 * 299.92329 * 9 7 2 11 11 C 1.53120 * 109.50290 * 60.00267 * 9 7 2 12 12 C 1.53119 * 109.16202 * 177.63586 * 11 9 7 13 13 C 1.53044 * 109.27589 * 302.34077 * 12 11 9 14 14 N 1.46847 * 109.51335 * 59.18419 * 13 12 11 15 15 C 1.46899 * 110.99862 * 174.15436 * 14 13 12 16 16 C 1.52999 * 109.47036 * 66.05037 * 15 14 13 17 17 C 1.52999 * 109.46926 * 179.97438 * 16 15 14 18 18 C 1.53008 * 109.46965 * 179.97438 * 17 16 15 19 19 C 1.53175 * 109.54222 * 294.82474 * 18 17 16 20 20 C 1.53105 * 109.15424 * 183.24546 * 19 18 17 21 21 O 1.42896 * 109.49211 * 57.47166 * 20 19 18 22 22 C 1.42907 * 114.09590 * 298.89062 * 21 20 19 23 23 C 1.53087 * 109.41645 * 61.15438 * 22 21 20 24 24 C 1.46847 * 111.20163 * 298.24410 * 14 13 12 25 25 H 0.97001 * 119.99568 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.52850 * 57.72670 * 11 9 7 27 27 H 1.09003 * 109.57279 * 297.56457 * 11 9 7 28 28 H 1.09000 * 109.50507 * 182.40742 * 12 11 9 29 29 H 1.08999 * 109.54263 * 62.29675 * 12 11 9 30 30 H 1.09002 * 109.46396 * 179.19729 * 13 12 11 31 31 H 1.08994 * 109.46485 * 299.17654 * 13 12 11 32 32 H 1.09004 * 109.46859 * 186.04870 * 15 14 13 33 33 H 1.08996 * 109.47621 * 306.04495 * 15 14 13 34 34 H 1.08999 * 109.46741 * 299.99794 * 16 15 14 35 35 H 1.08997 * 109.47402 * 59.99850 * 16 15 14 36 36 H 1.08999 * 109.47343 * 299.99549 * 17 16 15 37 37 H 1.08996 * 109.47800 * 60.00057 * 17 16 15 38 38 H 1.08996 * 109.54377 * 54.99931 * 18 17 16 39 39 H 1.09001 * 109.51932 * 303.05443 * 19 18 17 40 40 H 1.08989 * 109.52654 * 63.24317 * 19 18 17 41 41 H 1.09004 * 109.40335 * 297.48746 * 20 19 18 42 42 H 1.09002 * 109.48283 * 177.50131 * 20 19 18 43 43 H 1.08999 * 109.47896 * 301.17183 * 22 21 20 44 44 H 1.09004 * 109.48062 * 181.14453 * 22 21 20 45 45 H 1.08995 * 109.52202 * 182.48239 * 23 22 21 46 46 H 1.09008 * 109.51632 * 62.29861 * 23 22 21 47 47 H 1.09005 * 109.46836 * 301.74653 * 24 14 13 48 48 H 1.08995 * 109.45748 * 181.76188 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6250 -2.5579 0.8907 11 6 0.3711 -2.5813 -1.2498 12 6 -0.3454 -3.9343 -1.2721 13 6 0.6941 -5.0570 -1.2390 14 7 1.5098 -4.9348 -0.0241 15 6 2.4265 -6.0746 0.1115 16 6 3.4540 -6.0401 -1.0216 17 6 4.4092 -7.2269 -0.8801 18 6 5.4364 -7.1928 -2.0136 19 6 4.7272 -7.4070 -3.3543 20 6 5.7712 -7.4523 -4.4733 21 8 6.7147 -8.4910 -4.2034 22 6 7.4417 -8.3168 -2.9855 23 6 6.4652 -8.3085 -1.8065 24 6 2.2444 -3.6634 -0.0033 25 1 -0.4849 0.8401 -0.0004 26 1 0.9926 -2.4835 -2.1398 27 1 -0.3664 -1.7789 -1.2306 28 1 -0.9404 -4.0161 -2.1816 29 1 -0.9970 -4.0161 -0.4022 30 1 0.1868 -6.0218 -1.2404 31 1 1.3364 -4.9833 -2.1165 32 1 2.9411 -6.0149 1.0705 33 1 1.8602 -7.0045 0.0603 34 1 2.9394 -6.0998 -1.9806 35 1 4.0204 -5.1102 -0.9704 36 1 4.9238 -7.1668 0.0789 37 1 3.8433 -8.1570 -0.9311 38 1 5.9418 -6.2272 -2.0187 39 1 4.1798 -8.3493 -3.3303 40 1 4.0333 -6.5861 -3.5346 41 1 6.2895 -6.4947 -4.5240 42 1 5.2764 -7.6488 -5.4244 43 1 7.9818 -7.3706 -3.0167 44 1 8.1504 -9.1362 -2.8648 45 1 7.0130 -8.1317 -0.8810 46 1 5.9539 -9.2696 -1.7504 47 1 2.8793 -3.5962 -0.8868 48 1 2.8629 -3.6161 0.8929 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595623669.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:22 Heat of formation + Delta-G solvation = -79.613570 kcal Electronic energy + Delta-G solvation = -22987.735663 eV Core-core repulsion = 19847.875156 eV Total energy + Delta-G solvation = -3139.860508 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.70687 -38.49393 -35.85778 -33.91434 -32.21828 -31.32898 -30.24401 -29.82009 -26.48047 -24.92548 -24.14584 -23.61607 -21.97299 -21.42904 -20.65398 -20.14782 -18.24644 -16.49242 -16.25173 -16.22116 -15.46995 -15.03395 -14.90250 -14.45175 -14.32061 -14.21667 -13.84824 -13.40878 -13.20352 -12.70728 -12.58237 -12.33089 -12.28347 -11.84549 -11.71166 -11.55137 -11.42925 -11.30196 -11.00510 -10.93381 -10.84118 -10.65185 -10.52760 -10.42109 -10.26961 -9.97684 -9.78224 -9.69217 -9.43149 -9.00237 -8.68613 -8.28228 -7.54801 -5.95662 -4.01935 3.32573 3.37424 3.39639 3.66331 4.40096 4.45616 4.52148 4.65081 4.68641 4.79881 4.98180 5.10710 5.17517 5.25763 5.31496 5.34116 5.43038 5.48364 5.52139 5.61193 5.66714 5.76919 5.78689 5.85685 5.86666 5.90907 5.98228 6.03875 6.10406 6.14961 6.25873 6.39443 6.42322 6.50629 6.56215 6.75824 6.79447 6.97057 7.01146 7.24810 7.43634 7.71446 7.77382 7.88076 8.11454 8.20144 8.50559 9.02128 9.62177 11.10246 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019890 B = 0.003542 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.394743 B = 7902.997645 C = 8521.149206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.052 0.948 9 C 0.054 3.946 10 H 0.033 0.967 11 C -0.110 4.110 12 C -0.118 4.118 13 C 0.063 3.937 14 N -0.538 5.538 15 C 0.056 3.944 16 C -0.160 4.160 17 C -0.106 4.106 18 C -0.091 4.091 19 C -0.151 4.151 20 C 0.059 3.941 21 O -0.386 6.386 22 C 0.060 3.940 23 C -0.151 4.151 24 C 0.067 3.933 25 H 0.260 0.740 26 H 0.028 0.972 27 H 0.090 0.910 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.024 0.976 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.049 0.951 42 H 0.092 0.908 43 H 0.049 0.951 44 H 0.091 0.909 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.022 0.978 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.459 -16.073 -5.223 19.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.070 0.930 9 C 0.035 3.965 10 H 0.051 0.949 11 C -0.148 4.148 12 C -0.156 4.156 13 C -0.065 4.065 14 N -0.261 5.261 15 C -0.072 4.072 16 C -0.199 4.199 17 C -0.145 4.145 18 C -0.109 4.109 19 C -0.189 4.189 20 C -0.017 4.017 21 O -0.305 6.305 22 C -0.017 4.017 23 C -0.188 4.188 24 C -0.060 4.060 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.108 0.892 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.110 0.890 43 H 0.067 0.933 44 H 0.109 0.891 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.040 0.960 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.992 -16.093 -4.930 19.082 hybrid contribution 0.991 1.197 -0.528 1.642 sum 9.984 -14.895 -5.459 18.744 Atomic orbital electron populations 1.69885 1.05832 1.26386 1.50631 1.24933 0.94818 0.98900 0.95161 0.86704 0.79633 0.83371 0.78531 1.20415 1.21307 1.20308 1.21117 0.92744 0.90756 1.50761 0.92980 1.18662 0.92664 0.90368 0.94776 0.94912 1.21640 0.99993 0.94720 0.98430 1.21688 0.97255 0.96593 1.00097 1.22017 0.95461 0.98471 0.90597 1.62217 1.23620 1.02600 1.37616 1.22182 0.92977 0.94517 0.97565 1.22333 0.98324 0.98614 1.00631 1.21536 0.96518 0.98688 0.97712 1.21227 0.96052 0.98588 0.95047 1.22281 0.98632 1.03026 0.94946 1.22605 0.90083 0.90776 0.98276 1.87911 1.54308 1.47858 1.40429 1.22578 0.93525 1.01503 0.84097 1.22250 0.97969 0.99828 0.98792 1.22301 0.96433 0.88597 0.98667 0.93024 0.95293 0.89178 0.93674 0.92169 0.92681 0.95782 0.91363 0.91823 0.91864 0.91443 0.91936 0.92144 0.91102 0.91157 0.90468 0.93227 0.88980 0.93287 0.89107 0.90908 0.91106 0.95992 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.47 11.35 55.43 0.63 -24.84 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.17 8.57 -34.44 -0.30 -14.47 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.05 1.36 2.26 -91.69 -0.21 1.15 16 10 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 11 C -0.11 -2.62 5.02 -26.61 -0.13 -2.75 16 12 C -0.12 -2.34 6.09 -26.65 -0.16 -2.50 16 13 C 0.06 1.10 5.05 -3.83 -0.02 1.08 16 14 N -0.54 -9.92 4.86 -234.67 -1.14 -11.06 16 15 C 0.06 0.82 5.36 -3.83 -0.02 0.80 16 16 C -0.16 -2.09 4.28 -26.73 -0.11 -2.21 16 17 C -0.11 -1.12 4.69 -26.73 -0.13 -1.24 16 18 C -0.09 -0.90 2.27 -90.44 -0.21 -1.10 16 19 C -0.15 -1.50 5.10 -26.59 -0.14 -1.64 16 20 C 0.06 0.57 6.84 37.21 0.25 0.83 16 21 O -0.39 -4.26 10.77 -35.23 -0.38 -4.64 16 22 C 0.06 0.53 6.84 37.20 0.25 0.78 16 23 C -0.15 -1.31 5.42 -26.60 -0.14 -1.46 16 24 C 0.07 1.42 4.06 -3.83 -0.02 1.40 16 25 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.09 2.40 6.15 -51.93 -0.32 2.08 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.05 0.86 8.06 -51.93 -0.42 0.44 16 31 H 0.02 0.42 6.75 -51.93 -0.35 0.07 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.85 8.06 -51.93 -0.42 0.43 16 34 H 0.06 0.85 5.19 -51.93 -0.27 0.58 16 35 H 0.07 1.00 6.50 -51.93 -0.34 0.66 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.80 6.74 -51.94 -0.35 0.45 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 47 H 0.02 0.47 6.61 -51.93 -0.34 0.12 16 48 H 0.06 1.20 8.12 -51.93 -0.42 0.78 16 LS Contribution 355.38 15.07 5.36 5.36 Total: -1.00 -28.60 355.38 -10.83 -39.43 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -9.11 Total: -0.85 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -1.16 Total: -19.66 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: -0.51 Total: -35.91 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: -0.38 Total: -4.64 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.60 -10.83 -39.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623669.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.186 kcal (2) G-P(sol) polarization free energy of solvation -28.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds