Wall clock time and date at job start Tue Mar 31 2020 05:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99962 * 2 1 4 4 H 1.48498 * 109.46967 * 239.99662 * 3 2 1 5 5 H 1.48503 * 109.46839 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47286 * 119.99522 * 3 2 1 7 7 C 1.37880 * 120.00428 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00018 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99487 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.51136 * 299.92329 * 9 7 2 11 11 C 1.53120 * 109.50290 * 60.00267 * 9 7 2 12 12 C 1.53119 * 109.16202 * 177.63586 * 11 9 7 13 13 C 1.53044 * 109.27589 * 302.34077 * 12 11 9 14 14 N 1.46847 * 109.51335 * 59.18419 * 13 12 11 15 15 C 1.46899 * 110.99862 * 174.15436 * 14 13 12 16 16 C 1.52999 * 109.47036 * 66.05037 * 15 14 13 17 17 C 1.52999 * 109.46926 * 179.97438 * 16 15 14 18 18 C 1.53008 * 109.46965 * 179.97438 * 17 16 15 19 19 C 1.53175 * 109.54222 * 294.82474 * 18 17 16 20 20 C 1.53105 * 109.15424 * 183.24546 * 19 18 17 21 21 O 1.42896 * 109.49211 * 57.47166 * 20 19 18 22 22 C 1.42907 * 114.09590 * 298.89062 * 21 20 19 23 23 C 1.53087 * 109.41645 * 61.15438 * 22 21 20 24 24 C 1.46847 * 111.20163 * 298.24410 * 14 13 12 25 25 H 0.97001 * 119.99568 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.52850 * 57.72670 * 11 9 7 27 27 H 1.09003 * 109.57279 * 297.56457 * 11 9 7 28 28 H 1.09000 * 109.50507 * 182.40742 * 12 11 9 29 29 H 1.08999 * 109.54263 * 62.29675 * 12 11 9 30 30 H 1.09002 * 109.46396 * 179.19729 * 13 12 11 31 31 H 1.08994 * 109.46485 * 299.17654 * 13 12 11 32 32 H 1.09004 * 109.46859 * 186.04870 * 15 14 13 33 33 H 1.08996 * 109.47621 * 306.04495 * 15 14 13 34 34 H 1.08999 * 109.46741 * 299.99794 * 16 15 14 35 35 H 1.08997 * 109.47402 * 59.99850 * 16 15 14 36 36 H 1.08999 * 109.47343 * 299.99549 * 17 16 15 37 37 H 1.08996 * 109.47800 * 60.00057 * 17 16 15 38 38 H 1.08996 * 109.54377 * 54.99931 * 18 17 16 39 39 H 1.09001 * 109.51932 * 303.05443 * 19 18 17 40 40 H 1.08989 * 109.52654 * 63.24317 * 19 18 17 41 41 H 1.09004 * 109.40335 * 297.48746 * 20 19 18 42 42 H 1.09002 * 109.48283 * 177.50131 * 20 19 18 43 43 H 1.08999 * 109.47896 * 301.17183 * 22 21 20 44 44 H 1.09004 * 109.48062 * 181.14453 * 22 21 20 45 45 H 1.08995 * 109.52202 * 182.48239 * 23 22 21 46 46 H 1.09008 * 109.51632 * 62.29861 * 23 22 21 47 47 H 1.09005 * 109.46836 * 301.74653 * 24 14 13 48 48 H 1.08995 * 109.45748 * 181.76188 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6250 -2.5579 0.8907 11 6 0.3711 -2.5813 -1.2498 12 6 -0.3454 -3.9343 -1.2721 13 6 0.6941 -5.0570 -1.2390 14 7 1.5098 -4.9348 -0.0241 15 6 2.4265 -6.0746 0.1115 16 6 3.4540 -6.0401 -1.0216 17 6 4.4092 -7.2269 -0.8801 18 6 5.4364 -7.1928 -2.0136 19 6 4.7272 -7.4070 -3.3543 20 6 5.7712 -7.4523 -4.4733 21 8 6.7147 -8.4910 -4.2034 22 6 7.4417 -8.3168 -2.9855 23 6 6.4652 -8.3085 -1.8065 24 6 2.2444 -3.6634 -0.0033 25 1 -0.4849 0.8401 -0.0004 26 1 0.9926 -2.4835 -2.1398 27 1 -0.3664 -1.7789 -1.2306 28 1 -0.9404 -4.0161 -2.1816 29 1 -0.9970 -4.0161 -0.4022 30 1 0.1868 -6.0218 -1.2404 31 1 1.3364 -4.9833 -2.1165 32 1 2.9411 -6.0149 1.0705 33 1 1.8602 -7.0045 0.0603 34 1 2.9394 -6.0998 -1.9806 35 1 4.0204 -5.1102 -0.9704 36 1 4.9238 -7.1668 0.0789 37 1 3.8433 -8.1570 -0.9311 38 1 5.9418 -6.2272 -2.0187 39 1 4.1798 -8.3493 -3.3303 40 1 4.0333 -6.5861 -3.5346 41 1 6.2895 -6.4947 -4.5240 42 1 5.2764 -7.6488 -5.4244 43 1 7.9818 -7.3706 -3.0167 44 1 8.1504 -9.1362 -2.8648 45 1 7.0130 -8.1317 -0.8810 46 1 5.9539 -9.2696 -1.7504 47 1 2.8793 -3.5962 -0.8868 48 1 2.8629 -3.6161 0.8929 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595623669.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:22 Heat of formation + Delta-G solvation = -95.660091 kcal Electronic energy + Delta-G solvation = -22988.431493 eV Core-core repulsion = 19847.875156 eV Total energy + Delta-G solvation = -3140.556337 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.54568 -39.92544 -36.94188 -35.50570 -33.86623 -32.06522 -31.68033 -31.40995 -27.58127 -26.92143 -25.27587 -24.46044 -23.27890 -22.91431 -22.02958 -20.91979 -19.91686 -18.42646 -17.16178 -16.96897 -16.78010 -16.43478 -16.06233 -15.75321 -15.55351 -15.36095 -15.00264 -14.85761 -14.47846 -14.32696 -13.90765 -13.77256 -13.29917 -13.22305 -12.86447 -12.75452 -12.73783 -12.57044 -12.53456 -12.38448 -12.21807 -11.91143 -11.79332 -11.71652 -11.45911 -11.36763 -11.17198 -11.10734 -10.83606 -10.65435 -10.44734 -10.37227 -8.99947 -8.07856 -6.22351 1.40912 1.42207 1.49881 2.42581 2.96582 3.18734 3.21003 3.66851 3.75232 3.90509 4.07032 4.10282 4.19081 4.26082 4.29753 4.35220 4.40201 4.48674 4.51771 4.59904 4.63400 4.67477 4.76433 4.79238 4.79493 4.84772 4.91133 4.95049 5.02284 5.03100 5.07804 5.12320 5.16270 5.18936 5.19875 5.29239 5.39626 5.44534 5.50487 5.54204 5.63364 5.98041 6.14423 6.23041 6.25444 6.43546 6.47816 6.90745 7.45555 8.96574 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019890 B = 0.003542 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.394743 B = 7902.997645 C = 8521.149206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.953 3.047 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.538 4.538 8 H 0.050 0.950 9 C 0.051 3.949 10 H -0.007 1.007 11 C -0.103 4.103 12 C -0.113 4.113 13 C 0.067 3.933 14 N -0.551 5.551 15 C 0.057 3.943 16 C -0.150 4.150 17 C -0.098 4.098 18 C -0.091 4.091 19 C -0.148 4.148 20 C 0.057 3.943 21 O -0.404 6.404 22 C 0.054 3.946 23 C -0.145 4.145 24 C 0.085 3.915 25 H 0.260 0.740 26 H 0.021 0.979 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.029 0.971 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.049 0.951 42 H 0.101 0.899 43 H 0.051 0.949 44 H 0.106 0.894 45 H 0.084 0.916 46 H 0.071 0.929 47 H 0.020 0.980 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.499 -17.583 -5.650 21.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.576 4.576 8 H 0.069 0.931 9 C 0.032 3.968 10 H 0.011 0.989 11 C -0.141 4.141 12 C -0.151 4.151 13 C -0.060 4.060 14 N -0.275 5.275 15 C -0.071 4.071 16 C -0.189 4.189 17 C -0.136 4.136 18 C -0.109 4.109 19 C -0.186 4.186 20 C -0.020 4.020 21 O -0.323 6.323 22 C -0.022 4.022 23 C -0.183 4.183 24 C -0.043 4.043 25 H 0.069 0.931 26 H 0.040 0.960 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.047 0.953 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.067 0.933 42 H 0.119 0.881 43 H 0.069 0.931 44 H 0.124 0.876 45 H 0.102 0.898 46 H 0.090 0.910 47 H 0.038 0.962 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.043 -17.621 -5.356 20.977 hybrid contribution 0.649 1.653 -0.375 1.815 sum 10.692 -15.967 -5.731 20.053 Atomic orbital electron populations 1.70036 1.07199 1.27117 1.51166 1.25727 0.95655 1.02328 0.94769 0.85689 0.78449 0.79151 0.78825 1.19653 1.20893 1.19633 1.21505 0.92941 0.92271 1.50902 0.93128 1.18598 0.93068 0.91511 0.93592 0.98893 1.21443 0.99044 0.96298 0.97313 1.21610 0.97671 0.95037 1.00754 1.22005 0.94862 0.98769 0.90412 1.62136 1.24505 1.02452 1.38362 1.22270 0.92998 0.93576 0.98249 1.22201 0.98139 0.98803 0.99787 1.21460 0.96168 0.97785 0.98184 1.21210 0.96209 0.98676 0.94842 1.22238 0.98542 1.02720 0.95074 1.22669 0.89989 0.90622 0.98683 1.87887 1.54664 1.48349 1.41428 1.22740 0.93683 1.02340 0.83444 1.22207 0.97640 0.99204 0.99255 1.21916 0.95199 0.88918 0.98256 0.93068 0.96007 0.92535 0.91342 0.93311 0.89579 0.95262 0.91202 0.89651 0.92037 0.93568 0.91431 0.91070 0.92094 0.91073 0.91121 0.93255 0.88082 0.93078 0.87562 0.89761 0.91001 0.96162 0.93155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.97 11.35 21.45 0.24 -53.73 16 2 C 0.01 0.79 5.30 84.65 0.45 1.23 16 3 Si 0.95 44.10 29.54 68.60 2.03 46.12 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.54 -30.32 8.57 25.60 0.22 -30.10 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.76 16 9 C 0.05 2.66 2.26 -11.49 -0.03 2.63 16 10 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 11 C -0.10 -5.01 5.02 30.67 0.15 -4.86 16 12 C -0.11 -4.39 6.09 30.65 0.19 -4.20 16 13 C 0.07 2.23 5.05 86.33 0.44 2.66 16 14 N -0.55 -19.70 4.86 -896.35 -4.35 -24.05 16 15 C 0.06 1.54 5.36 86.30 0.46 2.00 16 16 C -0.15 -3.66 4.28 30.59 0.13 -3.52 16 17 C -0.10 -1.82 4.69 30.60 0.14 -1.68 16 18 C -0.09 -1.64 2.27 -10.67 -0.02 -1.66 16 19 C -0.15 -2.70 5.10 30.69 0.16 -2.54 16 20 C 0.06 1.03 6.84 72.02 0.49 1.52 16 21 O -0.40 -8.27 10.77 -148.98 -1.60 -9.87 16 22 C 0.05 0.86 6.84 72.01 0.49 1.35 16 23 C -0.15 -2.20 5.42 30.68 0.17 -2.04 16 24 C 0.08 3.62 4.06 86.33 0.35 3.97 16 25 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 26 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 3.12 6.15 -2.39 -0.01 3.11 16 28 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.09 2.38 8.06 -2.39 -0.02 2.36 16 31 H 0.03 0.95 6.75 -2.39 -0.02 0.94 16 32 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.09 1.98 8.06 -2.39 -0.02 1.96 16 34 H 0.06 1.53 5.19 -2.39 -0.01 1.51 16 35 H 0.05 1.32 6.50 -2.39 -0.02 1.31 16 36 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.07 1.37 6.74 -2.39 -0.02 1.35 16 41 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 47 H 0.02 0.87 6.61 -2.38 -0.02 0.85 16 48 H 0.05 2.16 8.12 -2.39 -0.02 2.14 16 Total: -1.00 -62.51 355.38 0.99 -61.52 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.89 Total: 15.25 kcal Atomic # 6 Polarization: -39.03 SS G_CDS: 3.79 Total: -35.24 kcal Atomic # 7 Polarization: -73.67 SS G_CDS: -4.11 Total: -77.78 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -1.60 Total: -9.87 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -62.51 0.99 -61.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623669.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.144 kcal (2) G-P(sol) polarization free energy of solvation -62.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds