Wall clock time and date at job start Tue Mar 31 2020 05:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00304 * 2 1 4 4 H 1.48503 * 109.47084 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47003 * 299.99837 * 3 2 1 6 6 H 1.48500 * 109.47379 * 59.99772 * 3 2 1 7 7 C 1.37884 * 119.99497 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99494 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00158 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46901 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46780 * 179.97438 * 10 9 7 12 12 N 1.46907 * 109.46914 * 179.97438 * 11 10 9 13 13 C 1.46842 * 110.99676 * 66.04932 * 12 11 10 14 14 C 1.53036 * 109.52190 * 185.84074 * 13 12 11 15 15 C 1.53123 * 109.27788 * 300.81892 * 14 13 12 16 16 C 1.53123 * 109.16001 * 57.65365 * 15 14 13 17 17 H 1.08997 * 109.49749 * 62.28489 * 16 15 14 18 18 C 1.52999 * 109.50074 * 182.40572 * 16 15 14 19 19 H 1.08998 * 109.48523 * 59.82709 * 18 16 15 20 20 C 1.53091 * 109.48232 * 299.80058 * 18 16 15 21 21 C 1.53176 * 109.16581 * 182.40840 * 20 18 16 22 22 C 1.53186 * 109.03062 * 56.98472 * 21 20 18 23 23 C 1.53087 * 109.16329 * 303.01908 * 22 21 20 24 24 O 1.42901 * 109.41619 * 57.60927 * 23 22 21 25 25 C 1.46848 * 110.99958 * 190.25994 * 12 11 10 26 26 H 0.96998 * 119.99472 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47123 * 60.00455 * 9 7 2 28 28 H 1.08994 * 109.47434 * 299.99973 * 9 7 2 29 29 H 1.08996 * 109.46789 * 60.00055 * 10 9 7 30 30 H 1.09003 * 109.47024 * 300.00103 * 10 9 7 31 31 H 1.09004 * 109.47111 * 60.00745 * 11 10 9 32 32 H 1.08994 * 109.47567 * 300.00189 * 11 10 9 33 33 H 1.09002 * 109.46766 * 65.82407 * 13 12 11 34 34 H 1.09000 * 109.45508 * 305.84586 * 13 12 11 35 35 H 1.09000 * 109.50632 * 60.76184 * 14 13 12 36 36 H 1.09006 * 109.50216 * 180.87978 * 14 13 12 37 37 H 1.09000 * 109.52561 * 177.56017 * 15 14 13 38 38 H 1.09007 * 109.52268 * 297.75177 * 15 14 13 39 39 H 1.09001 * 109.52238 * 302.31986 * 20 18 16 40 40 H 1.09007 * 109.51939 * 62.44490 * 20 18 16 41 41 H 1.08996 * 109.54381 * 176.84515 * 21 20 18 42 42 H 1.08992 * 109.54390 * 297.03329 * 21 20 18 43 43 H 1.08995 * 109.52331 * 62.92579 * 22 21 20 44 44 H 1.09003 * 109.51875 * 183.11355 * 22 21 20 45 45 H 1.09003 * 109.47884 * 177.59660 * 23 22 21 46 46 H 1.09007 * 109.48172 * 297.62799 * 23 22 21 47 47 H 1.09003 * 109.46014 * 294.17985 * 25 12 11 48 48 H 1.08991 * 109.46260 * 54.15359 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 7 2.4346 -6.1038 0.0006 13 6 3.2004 -6.1420 1.2529 14 6 4.2806 -7.2221 1.1590 15 6 3.6181 -8.5785 0.9024 16 6 2.7878 -8.4974 -0.3815 17 1 3.4431 -8.2830 -1.2257 18 6 2.0742 -9.8308 -0.6133 19 1 1.4202 -10.0450 0.2319 20 6 3.1118 -10.9479 -0.7519 21 6 2.3929 -12.2687 -1.0435 22 6 1.5419 -12.1059 -2.3067 23 6 0.5649 -10.9441 -2.1082 24 8 1.2969 -9.7536 -1.8100 25 6 1.7510 -7.3804 -0.2430 26 1 -0.4849 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6239 -2.5567 0.8902 29 1 2.8717 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 0.8531 -5.0451 -0.8887 32 1 0.8537 -5.0446 0.8913 33 1 2.5302 -6.3697 2.0818 34 1 3.6698 -5.1727 1.4211 35 1 4.9594 -6.9876 0.3391 36 1 4.8387 -7.2608 2.0946 37 1 4.3863 -9.3439 0.7918 38 1 2.9689 -8.8312 1.7408 39 1 3.7913 -10.7143 -1.5715 40 1 3.6772 -11.0370 0.1759 41 1 3.1287 -13.0577 -1.1988 42 1 1.7517 -12.5285 -0.2013 43 1 2.1897 -11.8957 -3.1577 44 1 0.9837 -13.0239 -2.4906 45 1 -0.0140 -10.7962 -3.0199 46 1 -0.1090 -11.1729 -1.2825 47 1 1.0874 -7.6023 0.5928 48 1 1.1677 -7.3106 -1.1611 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595786979.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:43 Heat of formation + Delta-G solvation = -81.572617 kcal Electronic energy + Delta-G solvation = -22679.673846 eV Core-core repulsion = 19539.728388 eV Total energy + Delta-G solvation = -3139.945458 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.08530 -38.45442 -35.00892 -33.89405 -33.20141 -32.02271 -30.85416 -29.33825 -26.64017 -25.13379 -24.54862 -23.36274 -22.28627 -21.42751 -20.48530 -19.66731 -19.59637 -16.55821 -16.38132 -16.15977 -15.40357 -15.02309 -14.86239 -14.77990 -14.45748 -14.23647 -13.89234 -13.71680 -13.28613 -13.06793 -12.96923 -12.78905 -12.20911 -12.06898 -11.75842 -11.65921 -11.41276 -11.22979 -11.14705 -10.95292 -10.83427 -10.73899 -10.66217 -10.52360 -10.47865 -10.20367 -10.11806 -9.59435 -9.49224 -9.23862 -8.96603 -8.29089 -7.93286 -5.94401 -3.95979 3.34818 3.41978 3.46776 3.54782 4.11131 4.49521 4.50947 4.54313 4.57585 4.68442 4.86051 4.87506 4.93764 5.02356 5.17232 5.22342 5.35578 5.41432 5.42297 5.46278 5.50484 5.57537 5.63839 5.65219 5.71357 5.76275 5.77922 5.81777 5.85737 5.93763 5.98506 6.05145 6.17183 6.23941 6.28175 6.41168 6.43367 6.80505 6.88104 7.10120 7.21737 7.51158 7.53169 7.75814 7.91400 8.07017 8.50655 9.11675 9.67678 11.17209 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.033045 B = 0.002836 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.124611 B = 9869.232045 C =10459.882534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.104 4.104 11 C 0.058 3.942 12 N -0.538 5.538 13 C 0.051 3.949 14 C -0.115 4.115 15 C -0.113 4.113 16 C -0.075 4.075 17 H 0.086 0.914 18 C 0.097 3.903 19 H 0.054 0.946 20 C -0.150 4.150 21 C -0.123 4.123 22 C -0.157 4.157 23 C 0.060 3.940 24 O -0.373 6.373 25 C 0.066 3.934 26 H 0.259 0.741 27 H 0.016 0.984 28 H 0.013 0.987 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.026 0.974 33 H 0.027 0.973 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.093 0.907 46 H 0.047 0.953 47 H 0.024 0.976 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.886 -26.439 -0.167 26.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.142 4.142 11 C -0.069 4.069 12 N -0.263 5.263 13 C -0.077 4.077 14 C -0.153 4.153 15 C -0.151 4.151 16 C -0.094 4.094 17 H 0.104 0.896 18 C 0.039 3.961 19 H 0.072 0.928 20 C -0.188 4.188 21 C -0.160 4.160 22 C -0.195 4.195 23 C -0.017 4.017 24 O -0.292 6.292 25 C -0.063 4.063 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.031 0.969 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.111 0.889 46 H 0.065 0.935 47 H 0.043 0.957 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.059 -26.074 -0.661 26.568 hybrid contribution -0.266 0.491 0.823 0.995 sum 4.793 -25.583 0.162 26.028 Atomic orbital electron populations 1.69982 1.06055 1.26365 1.51275 1.25038 0.94844 0.99245 0.95486 0.86550 0.80158 0.83870 0.77511 1.19730 1.21040 1.21092 1.21303 0.93080 0.91057 1.49972 0.92642 1.19082 0.94077 0.91448 0.97054 1.21649 0.99101 0.92737 1.00694 1.22263 0.93647 0.90918 1.00115 1.61965 1.27039 1.02980 1.34282 1.22139 0.95533 0.99781 0.90279 1.21570 0.97947 0.93942 1.01796 1.21643 0.98868 0.97883 0.96705 1.21169 0.97072 0.92193 0.98927 0.89550 1.22119 0.91805 0.95002 0.87169 0.92776 1.22249 0.98805 0.94902 1.02848 1.21591 0.99149 0.97558 0.97739 1.22197 0.99259 0.99181 0.98817 1.22541 0.93143 0.85106 1.00861 1.87983 1.62443 1.35642 1.43156 1.22003 0.94677 0.88842 1.00737 0.93148 0.96612 0.96882 0.93535 0.92616 0.91247 0.95547 0.95485 0.89923 0.91010 0.91689 0.91710 0.92344 0.90912 0.90679 0.91611 0.91995 0.91014 0.91133 0.88924 0.93459 0.95748 0.90133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.60 13.29 55.43 0.74 -26.86 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.10 -2.25 5.09 -26.73 -0.14 -2.39 16 11 C 0.06 1.07 4.96 -3.82 -0.02 1.05 16 12 N -0.54 -8.64 4.65 -234.67 -1.09 -9.73 16 13 C 0.05 0.73 5.29 -3.84 -0.02 0.71 16 14 C -0.11 -1.31 6.09 -26.65 -0.16 -1.47 16 15 C -0.11 -1.14 4.86 -26.60 -0.13 -1.27 16 16 C -0.07 -0.86 2.15 -90.54 -0.19 -1.06 16 17 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 18 C 0.10 0.99 2.23 -26.68 -0.06 0.93 16 19 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 20 C -0.15 -1.24 5.00 -26.59 -0.13 -1.37 16 21 C -0.12 -0.87 6.03 -26.54 -0.16 -1.03 16 22 C -0.16 -1.13 6.14 -26.59 -0.16 -1.29 16 23 C 0.06 0.52 6.84 37.20 0.25 0.78 16 24 O -0.37 -4.34 9.75 -35.23 -0.34 -4.69 16 25 C 0.07 0.92 4.59 -3.84 -0.02 0.90 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.99 6.44 -51.93 -0.33 0.65 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.07 1.30 7.98 -51.93 -0.41 0.89 16 32 H 0.03 0.50 8.12 -51.93 -0.42 0.07 16 33 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 1.28 6.22 -51.93 -0.32 0.96 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.55 6.64 -51.93 -0.34 0.20 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.54 6.63 -51.93 -0.34 0.20 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.08 1.22 7.58 -51.93 -0.39 0.82 16 LS Contribution 361.43 15.07 5.45 5.45 Total: -1.00 -31.04 361.43 -11.07 -42.11 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -9.30 Total: -4.46 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -1.49 Total: -18.93 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: -0.36 Total: -36.60 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.34 Total: -4.69 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.04 -11.07 -42.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595786979.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.463 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds