Wall clock time and date at job start Tue Mar 31 2020 05:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00272 * 2 1 4 4 H 1.48495 * 109.46988 * 269.99704 * 3 2 1 5 5 H 1.48500 * 109.46912 * 30.00117 * 3 2 1 6 6 H 1.48505 * 109.47171 * 149.99744 * 3 2 1 7 7 C 1.37879 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99879 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00052 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47068 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46889 * 180.02562 * 10 9 7 12 12 N 1.46907 * 109.46690 * 180.02562 * 11 10 9 13 13 C 1.46841 * 110.99985 * 314.20468 * 12 11 10 14 14 C 1.53035 * 109.52463 * 174.16083 * 13 12 11 15 15 C 1.53128 * 109.30665 * 59.16255 * 14 13 12 16 16 C 1.53126 * 109.15769 * 302.40089 * 15 14 13 17 17 H 1.08997 * 109.50711 * 297.64131 * 16 15 14 18 18 C 1.52997 * 109.50255 * 177.55412 * 16 15 14 19 19 H 1.08997 * 109.48823 * 185.10627 * 18 16 15 20 20 C 1.53096 * 109.47657 * 65.08331 * 18 16 15 21 21 C 1.53181 * 109.16280 * 182.40424 * 20 18 16 22 22 C 1.53178 * 109.03300 * 56.98248 * 21 20 18 23 23 C 1.53100 * 109.16395 * 303.01709 * 22 21 20 24 24 O 1.42894 * 109.48278 * 305.14172 * 18 16 15 25 25 C 1.46850 * 110.99521 * 189.99612 * 12 11 10 26 26 H 0.97003 * 119.99367 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47233 * 60.00452 * 9 7 2 28 28 H 1.08996 * 109.47003 * 300.00020 * 9 7 2 29 29 H 1.08997 * 109.47017 * 59.99685 * 10 9 7 30 30 H 1.09005 * 109.47049 * 299.99702 * 10 9 7 31 31 H 1.08990 * 109.47358 * 59.99956 * 11 10 9 32 32 H 1.09005 * 109.46838 * 299.99594 * 11 10 9 33 33 H 1.09001 * 109.46701 * 294.18163 * 13 12 11 34 34 H 1.09003 * 109.46269 * 54.14584 * 13 12 11 35 35 H 1.09005 * 109.50682 * 179.12031 * 14 13 12 36 36 H 1.09005 * 109.50468 * 299.20320 * 14 13 12 37 37 H 1.09004 * 109.55561 * 182.48165 * 15 14 13 38 38 H 1.08996 * 109.49524 * 62.28733 * 15 14 13 39 39 H 1.08998 * 109.52300 * 302.31376 * 20 18 16 40 40 H 1.09004 * 109.51858 * 62.50103 * 20 18 16 41 41 H 1.09000 * 109.54215 * 176.84680 * 21 20 18 42 42 H 1.09003 * 109.54032 * 297.11816 * 21 20 18 43 43 H 1.08997 * 109.52451 * 183.11671 * 22 21 20 44 44 H 1.08999 * 109.52589 * 62.92239 * 22 21 20 45 45 H 1.08996 * 109.48261 * 297.62749 * 23 22 21 46 46 H 1.08996 * 109.49181 * 177.59938 * 23 22 21 47 47 H 1.08995 * 109.45991 * 65.82584 * 25 12 11 48 48 H 1.08993 * 109.45653 * 305.85036 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 5.5514 -2.6367 0.0022 12 7 6.0410 -4.0218 0.0015 13 6 5.3144 -4.8373 0.9830 14 6 5.7470 -6.2995 0.8535 15 6 7.2559 -6.4042 1.0922 16 6 7.9867 -5.5074 0.0889 17 1 7.7871 -5.8566 -0.9241 18 6 9.4917 -5.5588 0.3598 19 1 10.0031 -4.8523 -0.2940 20 6 10.0112 -6.9732 0.0887 21 6 11.5057 -7.0319 0.4195 22 6 11.7121 -6.6060 1.8763 23 6 11.1269 -5.2058 2.0783 24 8 9.7425 -5.2138 1.7236 25 6 7.4892 -4.0681 0.2406 26 1 -0.4849 0.8401 0.0004 27 1 3.8745 -0.6802 0.8912 28 1 3.8752 -0.6805 -0.8888 29 1 3.6584 -3.1503 -0.8892 30 1 3.6578 -3.1507 0.8908 31 1 5.9141 -2.1233 0.8926 32 1 5.9155 -2.1226 -0.8874 33 1 5.5375 -4.4802 1.9883 34 1 4.2429 -4.7579 0.7991 35 1 5.2190 -6.9021 1.5926 36 1 5.5108 -6.6617 -0.1472 37 1 7.5758 -7.4375 0.9576 38 1 7.4871 -6.0795 2.1067 39 1 9.4716 -7.6853 0.7132 40 1 9.8605 -7.2214 -0.9619 41 1 11.8698 -8.0501 0.2821 42 1 12.0516 -6.3560 -0.2389 43 1 12.7778 -6.5916 2.1041 44 1 11.2069 -7.3106 2.5369 45 1 11.6597 -4.4946 1.4471 46 1 11.2327 -4.9146 3.1233 47 1 7.7021 -3.7147 1.2494 48 1 7.9971 -3.4302 -0.4825 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595786980.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:45 Heat of formation + Delta-G solvation = -74.825725 kcal Electronic energy + Delta-G solvation = -22853.909256 eV Core-core repulsion = 19714.256365 eV Total energy + Delta-G solvation = -3139.652891 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.17135 -38.47412 -35.07078 -33.90523 -33.15442 -32.05058 -31.12020 -29.39381 -26.94123 -25.37319 -24.47469 -23.45133 -22.40151 -21.34782 -20.35933 -19.64856 -19.43337 -16.72377 -16.43336 -16.25957 -15.52317 -15.03500 -14.96138 -14.82918 -14.46258 -14.18671 -13.91773 -13.83946 -13.29808 -13.12619 -12.93433 -12.73598 -12.48807 -12.18357 -11.77922 -11.74622 -11.56374 -11.43144 -11.26421 -11.03149 -10.91633 -10.78757 -10.65807 -10.54048 -10.24677 -10.09552 -9.79936 -9.65389 -9.61302 -9.46288 -9.09885 -8.49310 -7.97731 -6.00019 -3.97414 3.33989 3.40931 3.45350 3.56216 4.07948 4.45908 4.49171 4.49397 4.54619 4.59947 4.83408 4.88557 4.99676 5.04933 5.15317 5.26441 5.33211 5.34142 5.40598 5.44399 5.51480 5.55459 5.60397 5.65856 5.69370 5.73254 5.75801 5.78248 5.90148 5.96973 5.97398 6.05351 6.13221 6.18669 6.23078 6.30476 6.49422 6.62570 6.66352 6.95885 7.04706 7.34896 7.41077 7.44547 7.52396 7.85140 8.59428 9.05468 9.62905 11.13584 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.034332 B = 0.002987 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.367801 B = 9373.015632 C = 9847.707701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.517 4.517 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.104 4.104 11 C 0.054 3.946 12 N -0.539 5.539 13 C 0.048 3.952 14 C -0.117 4.117 15 C -0.110 4.110 16 C -0.074 4.074 17 H 0.088 0.912 18 C 0.096 3.904 19 H 0.057 0.943 20 C -0.151 4.151 21 C -0.123 4.123 22 C -0.156 4.156 23 C 0.060 3.940 24 O -0.372 6.372 25 C 0.063 3.937 26 H 0.262 0.738 27 H 0.013 0.987 28 H 0.011 0.989 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.027 0.973 32 H 0.069 0.931 33 H 0.029 0.971 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.047 0.953 46 H 0.091 0.909 47 H 0.039 0.961 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.822 -15.070 2.175 29.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.142 4.142 11 C -0.073 4.073 12 N -0.263 5.263 13 C -0.080 4.080 14 C -0.155 4.155 15 C -0.148 4.148 16 C -0.092 4.092 17 H 0.107 0.893 18 C 0.038 3.962 19 H 0.074 0.926 20 C -0.188 4.188 21 C -0.160 4.160 22 C -0.194 4.194 23 C -0.017 4.017 24 O -0.291 6.291 25 C -0.065 4.065 26 H 0.072 0.928 27 H 0.031 0.969 28 H 0.029 0.971 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.088 0.912 33 H 0.048 0.952 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.066 0.934 46 H 0.109 0.891 47 H 0.057 0.943 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 24.423 -15.097 1.844 28.772 hybrid contribution 0.830 1.240 0.596 1.607 sum 25.254 -13.857 2.440 28.909 Atomic orbital electron populations 1.69923 1.06291 1.26789 1.51448 1.25043 0.94735 0.99173 0.94669 0.86765 0.80340 0.83624 0.78475 1.20304 1.21470 1.19065 1.21154 0.89536 0.94423 1.50429 0.91058 1.19553 0.97116 0.92344 0.96100 1.21619 0.91249 0.99760 1.01562 1.22284 0.97587 0.87354 1.00052 1.62005 1.02926 1.11691 1.49696 1.22215 0.99798 0.92718 0.93265 1.21615 0.95546 0.96311 1.02052 1.21567 0.94927 0.98690 0.99569 1.21236 0.91294 0.96320 1.00383 0.89348 1.22120 0.96026 0.94637 0.83446 0.92553 1.22243 0.96014 0.98222 1.02354 1.21592 0.96461 1.01675 0.96296 1.22188 1.01299 0.98442 0.97457 1.22534 0.82784 0.95516 1.00849 1.87975 1.23813 1.89874 1.27473 1.22022 0.88862 0.95713 0.99939 0.92816 0.96870 0.97058 0.91978 0.92537 0.95467 0.91238 0.95238 0.89402 0.91812 0.91357 0.92268 0.91418 0.90660 0.90883 0.91608 0.91964 0.91167 0.91094 0.93447 0.89086 0.94321 0.91467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.46 13.96 55.43 0.77 -27.69 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.22 27.47 -169.99 -4.67 17.55 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.52 -15.13 9.66 -34.44 -0.33 -15.46 16 8 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.44 16 10 C -0.10 -2.14 4.40 -26.73 -0.12 -2.26 16 11 C 0.05 0.95 5.27 -3.82 -0.02 0.93 16 12 N -0.54 -8.26 4.81 -234.67 -1.13 -9.39 16 13 C 0.05 0.70 4.85 -3.84 -0.02 0.68 16 14 C -0.12 -1.41 6.09 -26.65 -0.16 -1.57 16 15 C -0.11 -1.20 4.82 -26.60 -0.13 -1.33 16 16 C -0.07 -0.80 2.19 -90.53 -0.20 -1.00 16 17 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 18 C 0.10 0.92 2.33 -26.68 -0.06 0.85 16 19 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 20 C -0.15 -1.18 5.23 -26.59 -0.14 -1.32 16 21 C -0.12 -0.82 6.03 -26.55 -0.16 -0.98 16 22 C -0.16 -1.05 6.14 -26.59 -0.16 -1.22 16 23 C 0.06 0.48 6.84 37.21 0.25 0.74 16 24 O -0.37 -4.00 9.01 -35.23 -0.32 -4.32 16 25 C 0.06 0.83 4.61 -3.83 -0.02 0.81 16 26 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 27 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 28 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.06 1.16 6.21 -51.93 -0.32 0.83 16 31 H 0.03 0.48 8.08 -51.93 -0.42 0.06 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 1.40 5.81 -51.93 -0.30 1.09 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.57 6.65 -51.93 -0.35 0.22 16 38 H 0.07 0.83 7.49 -51.93 -0.39 0.44 16 39 H 0.07 0.62 6.53 -51.93 -0.34 0.28 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.04 0.56 7.80 -51.93 -0.41 0.15 16 48 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 LS Contribution 355.70 15.07 5.36 5.36 Total: -1.00 -31.14 355.70 -10.67 -41.81 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -9.22 Total: -3.60 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -1.47 Total: -19.73 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: -0.35 Total: -37.08 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -0.32 Total: -4.32 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.55 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.14 -10.67 -41.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595786980.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.013 kcal (2) G-P(sol) polarization free energy of solvation -31.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds