Wall clock time and date at job start Tue Mar 31 2020 05:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00279 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00109 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00231 * 3 2 1 6 6 H 1.48493 * 109.47121 * 149.99652 * 3 2 1 7 7 C 1.37875 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 N 1.46896 * 109.47114 * 180.02562 * 11 10 9 13 13 C 1.46849 * 111.00042 * 294.21049 * 12 11 10 14 14 C 1.53034 * 109.52665 * 174.16046 * 13 12 11 15 15 C 1.53116 * 109.27705 * 59.18137 * 14 13 12 16 16 C 1.53128 * 109.15958 * 302.34327 * 15 14 13 17 17 H 1.08999 * 109.50485 * 297.71423 * 16 15 14 18 18 C 1.53002 * 109.50141 * 177.59710 * 16 15 14 19 19 H 1.08998 * 109.48053 * 300.22176 * 18 16 15 20 20 C 1.53083 * 109.48291 * 60.25578 * 18 16 15 21 21 C 1.53174 * 109.16627 * 177.59052 * 20 18 16 22 22 C 1.53183 * 109.03397 * 303.01926 * 21 20 18 23 23 C 1.53098 * 109.16109 * 56.98146 * 22 21 20 24 24 O 1.42903 * 109.41370 * 302.38767 * 23 22 21 25 25 C 1.46847 * 111.00074 * 170.00310 * 12 11 10 26 26 H 0.97004 * 119.99097 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 28 28 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 29 29 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 30 30 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 31 31 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 32 32 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 33 33 H 1.09002 * 109.46271 * 294.17549 * 13 12 11 34 34 H 1.09001 * 109.46034 * 54.14432 * 13 12 11 35 35 H 1.09004 * 109.50188 * 299.24290 * 14 13 12 36 36 H 1.08999 * 109.53899 * 179.14030 * 14 13 12 37 37 H 1.09007 * 109.52285 * 182.44444 * 15 14 13 38 38 H 1.08993 * 109.52697 * 62.25096 * 15 14 13 39 39 H 1.08993 * 109.52669 * 297.49914 * 20 18 16 40 40 H 1.09008 * 109.52303 * 57.68319 * 20 18 16 41 41 H 1.08997 * 109.54627 * 183.15522 * 21 20 18 42 42 H 1.09000 * 109.54750 * 62.88703 * 21 20 18 43 43 H 1.09001 * 109.52462 * 297.07627 * 22 21 20 44 44 H 1.09002 * 109.52226 * 176.88538 * 22 21 20 45 45 H 1.09001 * 109.47949 * 182.40446 * 23 22 21 46 46 H 1.09004 * 109.48124 * 62.37360 * 23 22 21 47 47 H 1.09002 * 109.46202 * 305.84950 * 25 12 11 48 48 H 1.08995 * 109.46095 * 65.82168 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6367 0.0001 11 6 5.5515 -2.6367 0.0001 12 7 6.0411 -4.0217 -0.0004 13 6 5.6864 -4.7057 1.2497 14 6 6.0819 -6.1811 1.1556 15 6 7.5888 -6.2854 0.9047 16 6 7.9388 -5.5241 -0.3770 17 1 7.4288 -5.9834 -1.2238 18 6 9.4513 -5.5727 -0.6031 19 1 9.9604 -5.1152 0.2452 20 6 9.9001 -7.0295 -0.7430 21 6 11.4044 -7.0671 -1.0289 22 6 11.6941 -6.2459 -2.2892 23 6 11.1760 -4.8191 -2.0894 24 8 9.7778 -4.8582 -1.7968 25 6 7.4894 -4.0678 -0.2383 26 1 -0.4849 0.8402 0.0004 27 1 3.8751 -0.6798 0.8895 28 1 3.8745 -0.6809 -0.8904 29 1 3.6584 -3.1503 0.8903 30 1 3.6578 -3.1507 -0.8897 31 1 5.9148 -2.1229 -0.8898 32 1 5.9147 -2.1229 0.8901 33 1 6.2156 -4.2402 2.0812 34 1 4.6117 -4.6277 1.4141 35 1 5.5427 -6.6506 0.3328 36 1 5.8327 -6.6856 2.0890 37 1 7.8680 -7.3332 0.7937 38 1 8.1291 -5.8506 1.7456 39 1 9.6918 -7.5655 0.1829 40 1 9.3611 -7.4993 -1.5659 41 1 11.7203 -8.0985 -1.1852 42 1 11.9469 -6.6423 -0.1843 43 1 11.1914 -6.6997 -3.1432 44 1 12.7689 -6.2213 -2.4688 45 1 11.3411 -4.2418 -2.9991 46 1 11.7080 -4.3519 -1.2606 47 1 7.7243 -3.5265 -1.1548 48 1 8.0101 -3.6053 0.6001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595786982.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:50 Heat of formation + Delta-G solvation = -77.892651 kcal Electronic energy + Delta-G solvation = -22734.852188 eV Core-core repulsion = 19595.066305 eV Total energy + Delta-G solvation = -3139.785883 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.12919 -38.51656 -35.11490 -33.93013 -33.20078 -32.06614 -31.10177 -29.42967 -27.02629 -25.17481 -24.60741 -23.32171 -22.30807 -21.26650 -20.50334 -19.73530 -19.64077 -16.72510 -16.43530 -16.40500 -15.52392 -15.08389 -14.91173 -14.84557 -14.39386 -14.17176 -13.90197 -13.78441 -13.36190 -13.10423 -13.00817 -12.87142 -12.50947 -12.14522 -11.87890 -11.78813 -11.48344 -11.40021 -11.19412 -11.00114 -10.97367 -10.82437 -10.69942 -10.59558 -10.31094 -10.25381 -9.82891 -9.66278 -9.58227 -9.42175 -9.09947 -8.48027 -8.01187 -5.98719 -3.95937 3.34910 3.41672 3.46025 3.50727 4.04546 4.46544 4.49213 4.50385 4.54431 4.64592 4.81743 4.83752 4.89915 4.98516 5.13524 5.18466 5.31636 5.35391 5.38187 5.42524 5.44826 5.54088 5.59951 5.61149 5.65613 5.70881 5.72686 5.74760 5.81461 5.88213 5.95107 5.95380 6.12917 6.16501 6.22327 6.27441 6.38096 6.64097 6.67210 7.00052 7.05929 7.36037 7.39801 7.46993 7.55428 7.86778 8.61305 9.07200 9.64282 11.14930 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028883 B = 0.003044 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.183104 B = 9197.539542 C = 9911.819333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.516 4.516 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.097 4.097 11 C 0.055 3.945 12 N -0.538 5.538 13 C 0.050 3.950 14 C -0.115 4.115 15 C -0.114 4.114 16 C -0.075 4.075 17 H 0.087 0.913 18 C 0.097 3.903 19 H 0.054 0.946 20 C -0.150 4.150 21 C -0.123 4.123 22 C -0.157 4.157 23 C 0.060 3.940 24 O -0.374 6.374 25 C 0.066 3.934 26 H 0.262 0.738 27 H 0.012 0.988 28 H 0.011 0.989 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.026 0.974 33 H 0.027 0.973 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.092 0.908 46 H 0.047 0.953 47 H 0.080 0.920 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.186 -15.012 -0.112 29.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.090 0.910 9 C -0.052 4.052 10 C -0.135 4.135 11 C -0.072 4.072 12 N -0.262 5.262 13 C -0.078 4.078 14 C -0.153 4.153 15 C -0.151 4.151 16 C -0.094 4.094 17 H 0.105 0.895 18 C 0.039 3.961 19 H 0.072 0.928 20 C -0.188 4.188 21 C -0.160 4.160 22 C -0.195 4.195 23 C -0.016 4.016 24 O -0.293 6.293 25 C -0.062 4.062 26 H 0.072 0.928 27 H 0.031 0.969 28 H 0.029 0.971 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.111 0.889 46 H 0.065 0.935 47 H 0.099 0.901 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 24.658 -15.046 -0.605 28.892 hybrid contribution 1.056 1.253 0.802 1.825 sum 25.714 -13.793 0.198 29.180 Atomic orbital electron populations 1.69929 1.06285 1.26759 1.51531 1.25045 0.94734 0.99160 0.94704 0.86765 0.80313 0.83638 0.78483 1.20300 1.21490 1.19091 1.21161 0.89558 0.94425 1.50310 0.91035 1.19557 0.97107 0.92455 0.96041 1.21477 0.91052 0.99386 1.01562 1.22282 0.97916 0.86956 1.00047 1.61934 1.12675 1.16907 1.34656 1.22155 1.01717 0.93751 0.90151 1.21567 0.95279 0.96492 1.01937 1.21643 0.96932 0.99863 0.96674 1.21172 0.92406 0.96756 0.99030 0.89493 1.22119 0.95679 0.91087 0.87213 0.92793 1.22245 0.96115 0.97550 1.02891 1.21594 0.96298 1.00403 0.97750 1.22200 1.01399 0.97002 0.98865 1.22543 0.82409 0.95830 1.00860 1.87981 1.23207 1.74652 1.43419 1.22006 0.87911 0.95631 1.00697 0.92837 0.96930 0.97085 0.92896 0.91995 0.91251 0.95575 0.95462 0.89794 0.90933 0.91602 0.91655 0.92353 0.90656 0.90876 0.91570 0.92004 0.90997 0.91126 0.88939 0.93478 0.90145 0.95747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.56 13.96 55.43 0.77 -27.79 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.29 27.47 -169.99 -4.67 17.62 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 6 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 7 C -0.52 -15.17 9.66 -34.44 -0.33 -15.51 16 8 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 9 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 10 C -0.10 -2.01 5.08 -26.73 -0.14 -2.15 16 11 C 0.06 0.96 4.96 -3.83 -0.02 0.94 16 12 N -0.54 -8.25 4.66 -234.67 -1.09 -9.34 16 13 C 0.05 0.70 5.29 -3.83 -0.02 0.68 16 14 C -0.11 -1.27 6.09 -26.65 -0.16 -1.44 16 15 C -0.11 -1.10 4.86 -26.60 -0.13 -1.23 16 16 C -0.07 -0.83 2.15 -90.53 -0.19 -1.02 16 17 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 18 C 0.10 0.95 2.22 -26.69 -0.06 0.89 16 19 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 20 C -0.15 -1.19 5.00 -26.60 -0.13 -1.32 16 21 C -0.12 -0.84 6.03 -26.55 -0.16 -1.00 16 22 C -0.16 -1.09 6.14 -26.59 -0.16 -1.25 16 23 C 0.06 0.50 6.84 37.21 0.25 0.75 16 24 O -0.37 -4.18 9.75 -35.23 -0.34 -4.52 16 25 C 0.07 0.88 4.59 -3.83 -0.02 0.86 16 26 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 27 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 28 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 29 H 0.05 1.09 6.43 -51.93 -0.33 0.76 16 30 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.07 1.20 7.99 -51.93 -0.41 0.79 16 32 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 33 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 1.27 6.21 -51.93 -0.32 0.94 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.53 6.64 -51.92 -0.34 0.19 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.52 6.64 -51.93 -0.34 0.18 16 40 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.08 1.15 7.58 -51.93 -0.39 0.76 16 48 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 357.82 15.07 5.39 5.39 Total: -1.00 -31.43 357.82 -10.69 -42.12 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -9.27 Total: -4.06 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -1.48 Total: -19.41 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: -0.32 Total: -37.14 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.34 Total: -4.52 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.67 Total: 17.62 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.43 -10.69 -42.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595786982.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.771 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds