Wall clock time and date at job start Tue Mar 31 2020 05:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00551 * 2 1 4 4 H 1.48498 * 109.47410 * 240.00502 * 3 2 1 5 5 H 1.48503 * 109.46653 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47148 * 119.99768 * 3 2 1 7 7 C 1.37884 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99682 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99889 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47172 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47321 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47233 * 179.97438 * 11 10 9 13 13 C 1.46843 * 110.99978 * 170.00165 * 12 11 10 14 14 C 1.53044 * 109.52356 * 185.84325 * 13 12 11 15 15 C 1.53118 * 109.27801 * 300.82300 * 14 13 12 16 16 C 1.52994 * 109.52573 * 177.55945 * 15 14 13 17 17 H 1.09006 * 109.48121 * 300.14960 * 16 15 14 18 18 C 1.53089 * 109.48503 * 180.12651 * 16 15 14 19 19 C 1.53177 * 109.16584 * 182.39558 * 18 16 15 20 20 C 1.53179 * 109.10692 * 56.93603 * 19 18 16 21 21 C 1.53100 * 109.15719 * 303.14927 * 20 19 18 22 22 O 1.42902 * 109.49099 * 60.17463 * 16 15 14 23 23 C 1.53122 * 109.21246 * 57.61783 * 15 14 13 24 24 C 1.46845 * 111.00146 * 294.21562 * 12 11 10 25 25 H 0.97008 * 119.99851 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47171 * 60.00679 * 9 7 2 27 27 H 1.08997 * 109.47666 * 300.00069 * 9 7 2 28 28 H 1.08998 * 109.46561 * 60.00253 * 10 9 7 29 29 H 1.08997 * 109.46839 * 300.00523 * 10 9 7 30 30 H 1.09009 * 109.46709 * 60.00217 * 11 10 9 31 31 H 1.08996 * 109.47257 * 300.00446 * 11 10 9 32 32 H 1.09003 * 109.46287 * 65.83182 * 13 12 11 33 33 H 1.09002 * 109.46367 * 305.85755 * 13 12 11 34 34 H 1.08996 * 109.49947 * 180.88428 * 14 13 12 35 35 H 1.08996 * 109.53487 * 60.78253 * 14 13 12 36 36 H 1.09006 * 109.52195 * 297.68451 * 15 14 13 37 37 H 1.08999 * 109.52464 * 62.49120 * 18 16 15 38 38 H 1.09000 * 109.52446 * 302.30566 * 18 16 15 39 39 H 1.09002 * 109.54459 * 176.84823 * 19 18 16 40 40 H 1.08999 * 109.54390 * 297.02744 * 19 18 16 41 41 H 1.08997 * 109.52685 * 62.97182 * 20 19 18 42 42 H 1.08999 * 109.52226 * 183.15941 * 20 19 18 43 43 H 1.09002 * 109.41285 * 297.49784 * 21 20 19 44 44 H 1.08998 * 109.49112 * 177.50691 * 21 20 19 45 45 H 1.09006 * 109.49996 * 62.32222 * 23 15 14 46 46 H 1.09004 * 109.50436 * 182.43347 * 23 15 14 47 47 H 1.08995 * 109.46455 * 294.17229 * 24 12 11 48 48 H 1.09000 * 109.46251 * 54.14373 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4800 -4.9871 0.0001 12 7 2.4346 -6.1037 -0.0005 13 6 1.7504 -7.3810 0.2381 14 6 2.7870 -8.4985 0.3757 15 6 3.6200 -8.5760 -0.9068 16 6 4.6979 -9.6507 -0.7522 17 1 5.3445 -9.3988 0.0884 18 6 5.5321 -9.7253 -2.0337 19 6 6.5697 -10.8434 -1.8939 20 6 5.8493 -12.1610 -1.5919 21 6 5.0011 -11.9918 -0.3285 22 8 4.0785 -10.9164 -0.5143 23 6 4.2829 -7.2191 -1.1598 24 6 3.2030 -6.1385 -1.2513 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6245 -2.5571 0.8896 28 1 2.8716 -3.6044 0.8895 29 1 2.8718 -3.6044 -0.8905 30 1 0.8531 -5.0450 -0.8898 31 1 0.8536 -5.0446 0.8902 32 1 1.0887 -7.6006 -0.5998 33 1 1.1651 -7.3137 1.1551 34 1 2.2782 -9.4488 0.5371 35 1 3.4406 -8.2872 1.2219 36 1 2.9727 -8.8275 -1.7470 37 1 6.0406 -8.7744 -2.1931 38 1 4.8801 -9.9372 -2.8810 39 1 7.1302 -10.9391 -2.8239 40 1 7.2535 -10.6065 -1.0788 41 1 5.2038 -12.4238 -2.4299 42 1 6.5844 -12.9505 -1.4356 43 1 5.6517 -11.7704 0.5176 44 1 4.4515 -12.9126 -0.1334 45 1 4.9607 -6.9864 -0.3384 46 1 4.8423 -7.2560 -2.0946 47 1 2.5345 -6.3639 -2.0822 48 1 3.6727 -5.1688 -1.4161 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595787520.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:39 Heat of formation + Delta-G solvation = -82.046476 kcal Electronic energy + Delta-G solvation = -22534.037975 eV Core-core repulsion = 19394.071968 eV Total energy + Delta-G solvation = -3139.966006 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.09421 -38.49623 -35.07418 -33.92980 -33.31206 -31.57601 -30.63638 -29.91169 -26.80359 -25.23361 -24.32040 -23.08183 -22.53723 -21.42470 -20.49226 -19.76876 -19.58466 -16.56668 -16.42151 -16.22306 -15.47378 -15.00242 -14.86679 -14.78492 -14.42081 -14.14054 -14.05225 -13.74509 -13.32350 -13.08626 -12.93444 -12.68497 -12.16797 -12.11945 -11.82082 -11.51338 -11.47270 -11.30547 -11.14525 -11.04401 -10.85848 -10.76699 -10.66279 -10.55734 -10.49504 -10.18469 -10.13626 -9.59163 -9.51479 -9.26702 -9.01142 -8.30071 -7.96209 -5.95605 -3.97497 3.36226 3.40184 3.42981 3.51040 4.20502 4.37801 4.48431 4.50463 4.56029 4.63630 4.84087 4.86946 4.99428 5.03945 5.15168 5.31047 5.32675 5.39363 5.40003 5.43690 5.50266 5.56767 5.60288 5.66735 5.70044 5.75754 5.77303 5.81136 5.89389 5.97292 6.00025 6.04064 6.15583 6.20549 6.25282 6.39015 6.42764 6.77714 6.85124 7.05005 7.19006 7.47826 7.50201 7.73302 7.89169 8.05283 8.48776 9.09600 9.66089 11.15851 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.039955 B = 0.002633 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.612155 B =10629.693640 C =11119.293215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.104 4.104 11 C 0.056 3.944 12 N -0.539 5.539 13 C 0.054 3.946 14 C -0.105 4.105 15 C -0.079 4.079 16 C 0.098 3.902 17 H 0.058 0.942 18 C -0.152 4.152 19 C -0.123 4.123 20 C -0.157 4.157 21 C 0.061 3.939 22 O -0.377 6.377 23 C -0.109 4.109 24 C 0.054 3.946 25 H 0.260 0.740 26 H 0.013 0.987 27 H 0.015 0.985 28 H 0.055 0.945 29 H 0.046 0.954 30 H 0.027 0.973 31 H 0.069 0.931 32 H 0.028 0.972 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.048 0.952 44 H 0.091 0.909 45 H 0.072 0.928 46 H 0.066 0.934 47 H 0.028 0.972 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.890 -24.886 -2.882 27.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.556 4.556 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.142 4.142 11 C -0.071 4.071 12 N -0.264 5.264 13 C -0.074 4.074 14 C -0.142 4.142 15 C -0.097 4.097 16 C 0.040 3.960 17 H 0.076 0.924 18 C -0.190 4.190 19 C -0.161 4.161 20 C -0.195 4.195 21 C -0.016 4.016 22 O -0.296 6.296 23 C -0.147 4.147 24 C -0.074 4.074 25 H 0.070 0.930 26 H 0.031 0.969 27 H 0.034 0.966 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.109 0.891 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.047 0.953 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.857 -24.715 -2.490 27.109 hybrid contribution 0.150 0.795 -0.747 1.101 sum 11.007 -23.920 -3.237 26.529 Atomic orbital electron populations 1.69959 1.06052 1.26612 1.51018 1.25033 0.94848 0.99227 0.95443 0.86661 0.79573 0.83176 0.78601 1.20289 1.21340 1.20235 1.21223 0.92996 0.91079 1.50335 0.92755 1.19070 0.94058 0.91418 0.97043 1.21651 0.99115 0.92764 1.00684 1.22273 0.93683 0.90991 1.00125 1.62001 1.26878 1.02997 1.34475 1.22080 0.95328 0.89562 1.00419 1.21541 0.97715 0.97800 0.97182 1.21198 0.96162 0.93169 0.99205 1.22150 0.94086 0.83790 0.95976 0.92419 1.22268 0.98270 0.99418 0.99048 1.21593 0.97779 0.94734 1.01971 1.22195 0.99721 0.98032 0.99507 1.22524 0.92454 0.90614 0.95989 1.87935 1.33093 1.16352 1.92224 1.21662 0.98074 0.93068 1.01907 1.22091 0.95426 0.99520 0.90352 0.93016 0.96881 0.96643 0.92646 0.93513 0.95492 0.91279 0.95417 0.90916 0.91169 0.91398 0.90950 0.90428 0.91127 0.91590 0.91889 0.91157 0.91117 0.93405 0.89100 0.90960 0.91505 0.95347 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.00 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.10 -2.22 5.08 -26.73 -0.14 -2.36 16 11 C 0.06 1.02 4.96 -3.83 -0.02 1.00 16 12 N -0.54 -8.39 4.66 -234.67 -1.09 -9.48 16 13 C 0.05 0.73 5.46 -3.83 -0.02 0.71 16 14 C -0.10 -1.23 5.20 -26.65 -0.14 -1.37 16 15 C -0.08 -0.86 2.05 -90.50 -0.19 -1.04 16 16 C 0.10 0.95 2.23 -26.69 -0.06 0.89 16 17 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 18 C -0.15 -1.27 5.00 -26.59 -0.13 -1.40 16 19 C -0.12 -0.88 6.02 -26.55 -0.16 -1.04 16 20 C -0.16 -1.07 6.14 -26.59 -0.16 -1.23 16 21 C 0.06 0.48 6.84 37.21 0.25 0.73 16 22 O -0.38 -3.98 9.80 -35.23 -0.35 -4.32 16 23 C -0.11 -1.23 4.96 -26.65 -0.13 -1.36 16 24 C 0.05 0.76 5.29 -3.83 -0.02 0.74 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.05 0.98 6.43 -51.93 -0.33 0.64 16 30 H 0.03 0.49 8.12 -51.92 -0.42 0.07 16 31 H 0.07 1.25 7.99 -51.93 -0.41 0.83 16 32 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.96 8.02 -51.93 -0.42 0.54 16 34 H 0.07 0.80 7.77 -51.93 -0.40 0.40 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.61 6.64 -51.93 -0.34 0.26 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.07 0.65 6.64 -51.93 -0.34 0.30 16 47 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.08 1.27 6.21 -51.93 -0.32 0.95 16 LS Contribution 361.50 15.07 5.45 5.45 Total: -1.00 -30.60 361.50 -11.05 -41.65 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -9.31 Total: -4.52 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -1.46 Total: -19.07 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: -0.36 Total: -36.16 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.35 Total: -4.32 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.60 -11.05 -41.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595787520.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.397 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds