Wall clock time and date at job start Tue Mar 31 2020 05:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 120.00369 * 2 1 4 4 H 1.48504 * 109.47156 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46959 * 299.99753 * 3 2 1 6 6 H 1.48497 * 109.47426 * 59.99464 * 3 2 1 7 7 C 1.37884 * 119.99455 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99620 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99956 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46899 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46933 * 180.02562 * 10 9 7 12 12 N 1.46905 * 109.46780 * 179.97438 * 11 10 9 13 13 C 1.46846 * 110.99671 * 189.99771 * 12 11 10 14 14 C 1.53040 * 109.52144 * 185.83897 * 13 12 11 15 15 C 1.53121 * 109.27807 * 300.82285 * 14 13 12 16 16 C 1.53005 * 109.52207 * 177.56333 * 15 14 13 17 17 H 1.09000 * 109.49329 * 60.14968 * 16 15 14 18 18 C 1.53093 * 109.47794 * 180.18382 * 16 15 14 19 19 C 1.53180 * 109.16207 * 177.58907 * 18 16 15 20 20 C 1.53180 * 109.03380 * 303.01706 * 19 18 16 21 21 C 1.53096 * 109.16300 * 56.98167 * 20 19 18 22 22 O 1.42905 * 109.47459 * 300.12090 * 16 15 14 23 23 C 1.53116 * 109.21421 * 57.62039 * 15 14 13 24 24 C 1.46847 * 110.99890 * 314.20506 * 12 11 10 25 25 H 0.97003 * 119.99547 * 0.02562 * 1 2 3 26 26 H 1.08991 * 109.47440 * 60.00192 * 9 7 2 27 27 H 1.09002 * 109.47165 * 299.99819 * 9 7 2 28 28 H 1.08999 * 109.46999 * 59.99497 * 10 9 7 29 29 H 1.09000 * 109.46680 * 300.00215 * 10 9 7 30 30 H 1.08991 * 109.47525 * 59.99712 * 11 10 9 31 31 H 1.09002 * 109.47046 * 299.99360 * 11 10 9 32 32 H 1.09004 * 109.46345 * 65.82529 * 13 12 11 33 33 H 1.09004 * 109.45576 * 305.84796 * 13 12 11 34 34 H 1.09004 * 109.50571 * 180.88024 * 14 13 12 35 35 H 1.09000 * 109.50224 * 60.76242 * 14 13 12 36 36 H 1.09004 * 109.51959 * 297.68496 * 15 14 13 37 37 H 1.09000 * 109.52171 * 297.49519 * 18 16 15 38 38 H 1.09001 * 109.52367 * 57.61837 * 18 16 15 39 39 H 1.08996 * 109.54290 * 62.88145 * 19 18 16 40 40 H 1.08991 * 109.54625 * 183.06245 * 19 18 16 41 41 H 1.09001 * 109.52400 * 297.07495 * 20 19 18 42 42 H 1.09004 * 109.52264 * 176.88591 * 20 19 18 43 43 H 1.09005 * 109.47867 * 182.40583 * 21 20 19 44 44 H 1.09001 * 109.48124 * 62.37304 * 21 20 19 45 45 H 1.09003 * 109.49965 * 62.31930 * 23 15 14 46 46 H 1.08998 * 109.50180 * 182.43699 * 23 15 14 47 47 H 1.08995 * 109.46553 * 294.17594 * 24 12 11 48 48 H 1.09005 * 109.45968 * 54.16394 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6622 0.0027 11 6 1.4800 -4.9871 0.0033 12 7 2.4346 -6.1038 0.0037 13 6 1.7502 -7.3811 -0.2338 14 6 2.7479 -8.5317 -0.0826 15 6 3.8882 -8.3475 -1.0877 16 6 4.9201 -9.4615 -0.9002 17 1 4.4455 -10.4286 -1.0666 18 6 6.0619 -9.2738 -1.9026 19 6 7.1195 -10.3569 -1.6687 20 6 7.6017 -10.2790 -0.2169 21 6 6.4004 -10.4279 0.7204 22 8 5.4416 -9.4090 0.4292 23 6 4.5534 -6.9887 -0.8517 24 6 3.5030 -5.8830 -0.9792 25 1 -0.4849 0.8401 -0.0004 26 1 0.6239 -2.5575 -0.8879 27 1 0.6246 -2.5563 0.8920 28 1 2.8718 -3.6036 0.8926 29 1 2.8717 -3.6052 -0.8873 30 1 0.8536 -5.0454 -0.8868 31 1 0.8531 -5.0443 0.8932 32 1 1.3364 -7.3895 -1.2422 33 1 0.9445 -7.5015 0.4904 34 1 2.2432 -9.4786 -0.2742 35 1 3.1518 -8.5323 0.9298 36 1 3.4899 -8.3868 -2.1016 37 1 5.6731 -9.3574 -2.9175 38 1 6.5100 -8.2898 -1.7642 39 1 6.6839 -11.3383 -1.8561 40 1 7.9608 -10.1967 -2.3428 41 1 8.0817 -9.3159 -0.0437 42 1 8.3142 -11.0816 -0.0262 43 1 6.7318 -10.3305 1.7543 44 1 5.9453 -11.4076 0.5751 45 1 4.9866 -6.9644 0.1483 46 1 5.3378 -6.8340 -1.5926 47 1 3.0810 -5.8984 -1.9841 48 1 3.9705 -4.9154 -0.7963 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595787522.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:41 Heat of formation + Delta-G solvation = -77.588401 kcal Electronic energy + Delta-G solvation = -22763.008221 eV Core-core repulsion = 19623.235532 eV Total energy + Delta-G solvation = -3139.772690 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.11512 -38.42797 -35.03924 -33.85551 -33.26845 -31.57729 -30.56133 -29.84769 -26.78693 -25.28219 -24.18184 -23.33264 -22.56741 -21.45663 -20.30384 -19.74404 -19.32835 -16.49475 -16.37661 -16.14039 -15.39205 -14.95774 -14.87427 -14.70980 -14.45742 -14.29760 -13.99118 -13.70219 -13.22495 -13.11890 -12.86630 -12.63370 -12.16766 -12.08742 -11.65298 -11.53131 -11.45202 -11.38711 -11.14152 -10.97057 -10.83144 -10.69343 -10.61562 -10.55537 -10.45782 -10.10721 -9.96116 -9.54572 -9.51343 -9.26722 -8.97458 -8.30393 -7.88834 -5.95744 -3.97494 3.33940 3.41172 3.45857 3.61455 4.26587 4.40032 4.50323 4.51067 4.59396 4.65493 4.86366 4.88785 5.02599 5.07282 5.23893 5.31998 5.36459 5.40114 5.45346 5.46294 5.56773 5.58803 5.67284 5.70221 5.74454 5.77205 5.79227 5.87124 5.95942 5.97992 5.99441 6.08426 6.22302 6.29323 6.35311 6.38762 6.58520 6.79160 6.86852 7.11064 7.17035 7.53757 7.54134 7.73470 7.88851 8.05213 8.48681 9.10019 9.66268 11.15815 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029285 B = 0.002893 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.881734 B = 9677.520374 C =10211.454300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.112 4.112 11 C 0.056 3.944 12 N -0.537 5.537 13 C 0.055 3.945 14 C -0.106 4.106 15 C -0.079 4.079 16 C 0.098 3.902 17 H 0.053 0.947 18 C -0.154 4.154 19 C -0.122 4.122 20 C -0.157 4.157 21 C 0.061 3.939 22 O -0.368 6.368 23 C -0.107 4.107 24 C 0.049 3.951 25 H 0.259 0.741 26 H 0.013 0.987 27 H 0.016 0.984 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.026 0.974 31 H 0.070 0.930 32 H 0.026 0.974 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.092 0.908 44 H 0.045 0.955 45 H 0.079 0.921 46 H 0.062 0.938 47 H 0.026 0.974 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.820 -24.190 -2.954 27.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.149 4.149 11 C -0.071 4.071 12 N -0.262 5.262 13 C -0.073 4.073 14 C -0.144 4.144 15 C -0.098 4.098 16 C 0.040 3.960 17 H 0.071 0.929 18 C -0.192 4.192 19 C -0.160 4.160 20 C -0.195 4.195 21 C -0.016 4.016 22 O -0.287 6.287 23 C -0.145 4.145 24 C -0.079 4.079 25 H 0.069 0.931 26 H 0.031 0.969 27 H 0.034 0.966 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.088 0.912 32 H 0.044 0.956 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.110 0.890 44 H 0.064 0.936 45 H 0.098 0.902 46 H 0.080 0.920 47 H 0.044 0.956 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.824 -23.958 -2.359 26.820 hybrid contribution 0.101 0.738 -1.086 1.317 sum 11.924 -23.220 -3.445 26.329 Atomic orbital electron populations 1.69985 1.06055 1.26387 1.51213 1.25037 0.94846 0.99254 0.95451 0.86547 0.80158 0.83850 0.77523 1.19719 1.21093 1.21021 1.21301 0.93067 0.91067 1.50070 0.92654 1.19076 0.94036 0.91392 0.97096 1.21788 0.99302 0.93127 1.00717 1.22271 0.94063 0.90678 1.00072 1.62015 1.12719 1.01961 1.49473 1.22057 0.96154 0.89959 0.99123 1.21559 0.95350 0.96792 1.00717 1.21268 0.94646 0.94505 0.99374 1.22090 0.93086 0.98156 0.82624 0.92910 1.22285 0.96965 1.00247 0.99671 1.21581 0.98871 0.98943 0.96566 1.22193 0.98645 1.02909 0.95707 1.22529 0.88859 0.91108 0.99145 1.88004 1.58260 1.52617 1.29811 1.21632 0.97182 0.92750 1.02921 1.22215 0.93014 0.99680 0.93006 0.93131 0.96856 0.96571 0.92547 0.93209 0.95568 0.91170 0.95570 0.91048 0.92357 0.90162 0.90709 0.91108 0.90370 0.92137 0.91634 0.90943 0.91223 0.89019 0.93628 0.90228 0.91990 0.95607 0.89440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 2 C 0.05 1.61 5.46 -17.81 -0.10 1.51 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.40 4.40 -26.73 -0.12 -2.52 16 11 C 0.06 1.04 5.27 -3.82 -0.02 1.02 16 12 N -0.54 -8.64 4.81 -234.66 -1.13 -9.76 16 13 C 0.06 0.75 5.42 -3.83 -0.02 0.73 16 14 C -0.11 -1.24 5.26 -26.65 -0.14 -1.38 16 15 C -0.08 -0.86 2.15 -90.49 -0.19 -1.06 16 16 C 0.10 0.94 2.38 -26.68 -0.06 0.88 16 17 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 18 C -0.15 -1.29 5.13 -26.59 -0.14 -1.43 16 19 C -0.12 -0.87 6.03 -26.54 -0.16 -1.03 16 20 C -0.16 -1.13 6.14 -26.59 -0.16 -1.29 16 21 C 0.06 0.50 6.84 37.21 0.25 0.75 16 22 O -0.37 -4.03 8.98 -35.23 -0.32 -4.35 16 23 C -0.11 -1.33 4.84 -26.65 -0.13 -1.46 16 24 C 0.05 0.73 4.85 -3.83 -0.02 0.71 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.05 1.05 6.21 -51.93 -0.32 0.72 16 30 H 0.03 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.94 8.12 -51.93 -0.42 0.52 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.08 1.06 7.62 -51.93 -0.40 0.66 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.72 6.37 -51.93 -0.33 0.39 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.08 1.12 7.62 -51.93 -0.40 0.72 16 46 H 0.06 0.69 6.52 -51.93 -0.34 0.35 16 47 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.09 1.42 5.81 -51.93 -0.30 1.12 16 LS Contribution 358.87 15.07 5.41 5.41 Total: -1.00 -30.81 358.87 -11.01 -41.82 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -9.23 Total: -3.94 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -1.46 Total: -19.46 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: -0.39 Total: -36.53 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: -0.32 Total: -4.35 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.81 -11.01 -41.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595787522.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.764 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds