Wall clock time and date at job start Tue Mar 31 2020 05:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46493 * 119.99637 * 2 1 4 4 C 1.50703 * 109.47114 * 269.71836 * 3 2 1 5 5 H 1.07999 * 119.99600 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00007 * 179.97438 * 4 3 2 7 7 N 1.31521 * 120.00070 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00197 * 180.02562 * 6 4 3 9 9 H 1.48508 * 109.46641 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47174 * 119.99837 * 8 6 4 11 11 H 1.48502 * 109.47367 * 240.00543 * 8 6 4 12 12 C 1.34775 * 119.99867 * 179.71769 * 2 1 3 13 13 O 1.21280 * 119.99883 * 175.22427 * 12 2 1 14 14 C 1.51100 * 120.00425 * 355.22711 * 12 2 1 15 15 C 1.52673 * 109.10328 * 271.36255 * 14 12 2 16 16 C 1.52457 * 111.12570 * 180.59169 * 15 14 12 17 17 C 1.53007 * 110.17673 * 286.49691 * 16 15 14 18 18 C 1.54577 * 107.49865 * 169.95891 * 16 15 14 19 19 C 1.51919 * 112.49001 * 51.51502 * 16 15 14 20 20 C 1.52033 * 115.37963 * 314.85648 * 19 16 15 21 21 C 1.52755 * 111.81261 * 282.74228 * 20 19 16 22 22 C 1.54469 * 107.84702 * 164.75469 * 20 19 16 23 23 C 1.52779 * 111.49614 * 46.96013 * 20 19 16 24 24 H 1.08997 * 109.46795 * 95.61398 * 1 2 3 25 25 H 1.09004 * 109.46987 * 215.60610 * 1 2 3 26 26 H 1.08997 * 109.47324 * 335.60762 * 1 2 3 27 27 H 1.08999 * 109.47841 * 29.72553 * 3 2 1 28 28 H 1.09002 * 109.47348 * 149.72079 * 3 2 1 29 29 H 0.97004 * 119.99705 * 180.02562 * 7 6 4 30 30 H 1.08646 * 108.75933 * 31.90827 * 14 12 2 31 31 H 1.09346 * 109.22470 * 301.33221 * 15 14 12 32 32 H 1.09343 * 109.23588 * 59.81553 * 15 14 12 33 33 H 1.09001 * 109.47336 * 182.68619 * 17 16 15 34 34 H 1.09004 * 109.47036 * 302.68814 * 17 16 15 35 35 H 1.08995 * 109.46952 * 62.68361 * 17 16 15 36 36 H 1.09008 * 109.46641 * 298.53748 * 18 16 15 37 37 H 1.09001 * 109.46909 * 58.53555 * 18 16 15 38 38 H 1.09000 * 109.46908 * 178.53659 * 18 16 15 39 39 H 1.10081 * 108.71894 * 192.55086 * 19 16 15 40 40 H 1.10091 * 108.68658 * 77.10473 * 19 16 15 41 41 H 1.08995 * 109.46967 * 192.74753 * 21 20 19 42 42 H 1.09003 * 109.47282 * 312.75458 * 21 20 19 43 43 H 1.09005 * 109.46855 * 72.75008 * 21 20 19 44 44 H 1.08998 * 109.46684 * 299.66173 * 22 20 19 45 45 H 1.09002 * 109.46886 * 59.65776 * 22 20 19 46 46 H 1.08998 * 109.47191 * 179.65700 * 22 20 19 47 47 H 1.09162 * 109.40205 * 184.55471 * 23 20 19 48 48 H 1.09143 * 109.44276 * 65.15225 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4546 1.7003 -1.4208 5 1 2.1069 1.0906 -2.2416 6 6 3.1329 2.8739 -1.6728 7 7 3.5560 3.6165 -0.6731 8 14 3.4511 3.4092 -3.4339 9 1 2.8772 2.4068 -4.3673 10 1 2.8140 4.7291 -3.6728 11 1 4.9146 3.5174 -3.6617 12 6 2.1389 -1.1672 0.0058 13 8 3.3485 -1.1694 -0.0817 14 6 1.3874 -2.4730 0.1211 15 6 1.2132 -2.8205 1.5975 16 6 0.4709 -4.1413 1.7672 17 6 -1.0123 -3.9592 1.4383 18 6 0.5640 -4.5385 3.2581 19 6 1.0875 -5.2636 0.9498 20 6 1.4474 -4.9045 -0.4830 21 6 0.2159 -4.8702 -1.3860 22 6 2.3898 -6.0024 -1.0238 23 6 2.1998 -3.5768 -0.5552 24 1 -0.3633 -0.1005 -1.0227 25 1 -0.3633 -0.8356 0.5983 26 1 -0.3634 0.9359 0.4244 27 1 1.6063 2.0296 0.5095 28 1 3.1477 1.1397 0.5182 29 1 4.0329 4.4424 -0.8504 30 1 0.4194 -2.3627 -0.3598 31 1 2.1972 -2.8945 2.0685 32 1 0.6519 -2.0227 2.0915 33 1 -1.5402 -4.8975 1.6091 34 1 -1.4337 -3.1836 2.0778 35 1 -1.1196 -3.6669 0.3938 36 1 1.6098 -4.6766 3.5327 37 1 0.1281 -3.7503 3.8720 38 1 0.0197 -5.4688 3.4209 39 1 0.3892 -6.1144 0.9346 40 1 1.9958 -5.6157 1.4627 41 1 0.5309 -4.8357 -2.4289 42 1 -0.3838 -5.7646 -1.2169 43 1 -0.3784 -3.9856 -1.1566 44 1 3.2909 -6.0416 -0.4118 45 1 1.8831 -6.9668 -0.9867 46 1 2.6603 -5.7736 -2.0546 47 1 2.3695 -3.3125 -1.6007 48 1 3.1635 -3.6775 -0.0527 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596912635.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:45 Heat of formation + Delta-G solvation = -72.642877 kcal Electronic energy + Delta-G solvation = -24019.283389 eV Core-core repulsion = 20879.725153 eV Total energy + Delta-G solvation = -3139.558236 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.38265 -38.24920 -35.08613 -34.66771 -32.76635 -31.95835 -28.00012 -27.75762 -26.67360 -26.63206 -26.10546 -25.75941 -23.81488 -21.70326 -19.76938 -18.19366 -17.90790 -16.48328 -16.22883 -15.48979 -14.89813 -14.84074 -14.49344 -14.35546 -13.94513 -13.88080 -13.63365 -13.18650 -12.85204 -12.52817 -12.28104 -12.16395 -12.14787 -12.07752 -11.89617 -11.70365 -11.65706 -11.56053 -11.20745 -11.06789 -10.91568 -10.85881 -10.80913 -10.61580 -10.53554 -10.30503 -10.11421 -10.07190 -9.85676 -9.56543 -8.65913 -8.40083 -7.56527 -6.00562 -4.04566 3.31975 3.39145 3.43143 3.51843 4.00889 4.47523 4.52643 4.66196 4.67255 4.98963 5.01673 5.12657 5.20477 5.30001 5.34305 5.42780 5.50976 5.54319 5.57686 5.63673 5.65618 5.67303 5.73623 5.80124 5.81987 5.86860 5.90577 5.94418 5.97888 6.02254 6.08791 6.12861 6.15501 6.19996 6.24762 6.35573 6.39245 6.44300 6.55308 6.62016 7.11156 7.47304 7.61981 7.96368 8.28462 8.50427 8.95845 9.19330 9.60450 11.07560 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023407 B = 0.004541 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.936058 B = 6164.875283 C = 6646.719049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.604 5.604 3 C 0.245 3.755 4 C -0.521 4.521 5 H 0.057 0.943 6 C 0.059 3.941 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.506 3.494 13 O -0.541 6.541 14 C -0.103 4.103 15 C -0.093 4.093 16 C -0.055 4.055 17 C -0.145 4.145 18 C -0.146 4.146 19 C -0.091 4.091 20 C -0.059 4.059 21 C -0.142 4.142 22 C -0.145 4.145 23 C -0.088 4.088 24 H 0.046 0.954 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.031 0.969 28 H 0.041 0.959 29 H 0.262 0.738 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.050 0.950 46 H 0.054 0.946 47 H 0.063 0.937 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.265 -18.285 4.432 21.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.336 5.336 3 C 0.126 3.874 4 C -0.560 4.560 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.293 3.707 13 O -0.418 6.418 14 C -0.125 4.125 15 C -0.131 4.131 16 C -0.055 4.055 17 C -0.202 4.202 18 C -0.203 4.203 19 C -0.129 4.129 20 C -0.059 4.059 21 C -0.199 4.199 22 C -0.202 4.202 23 C -0.126 4.126 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.517 -18.097 4.440 20.924 hybrid contribution 0.136 0.524 -0.990 1.128 sum -9.381 -17.573 3.450 20.217 Atomic orbital electron populations 1.21635 0.81699 1.01815 1.00726 1.48148 1.06007 1.07873 1.71564 1.19285 0.92421 0.78241 0.97455 1.21473 1.36065 1.06048 0.92403 0.92500 1.24938 0.95457 0.96436 0.97375 1.69948 1.38756 1.14292 1.30609 0.86455 0.78070 0.78251 0.84722 1.19832 1.21001 1.20888 1.20511 0.88015 0.85015 0.77188 1.90650 1.14365 1.87115 1.49711 1.21241 1.00042 0.93584 0.97589 1.21385 1.01028 0.96211 0.94512 1.20366 0.95320 0.94782 0.95021 1.22030 0.94754 1.01322 1.02086 1.22321 1.01606 1.00948 0.95421 1.21382 1.00512 0.96884 0.94076 1.20438 0.95470 0.95333 0.94622 1.21953 0.97280 1.01611 0.99083 1.22279 0.99026 0.97831 1.01060 1.21356 0.98454 0.91794 1.00969 0.93498 0.92619 0.91330 0.95138 0.94117 0.92848 0.89476 0.91452 0.91725 0.92941 0.92705 0.92012 0.92766 0.92677 0.92946 0.92499 0.92306 0.92741 0.92961 0.92158 0.92746 0.93077 0.92646 0.91825 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.39 9.83 59.85 0.59 1.98 16 2 N -0.60 -13.13 2.86 -182.78 -0.52 -13.65 16 3 C 0.25 6.58 5.16 -5.20 -0.03 6.55 16 4 C -0.52 -15.16 9.39 -34.44 -0.32 -15.49 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 8 Si 0.90 22.31 29.54 -169.99 -5.02 17.29 16 9 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 12 C 0.51 10.74 6.73 -10.79 -0.07 10.67 16 13 O -0.54 -13.98 15.75 5.56 0.09 -13.89 16 14 C -0.10 -1.56 1.49 -91.83 -0.14 -1.70 16 15 C -0.09 -1.22 3.62 -27.18 -0.10 -1.32 16 16 C -0.05 -0.56 0.70 -154.50 -0.11 -0.67 16 17 C -0.14 -1.31 7.98 37.16 0.30 -1.01 16 18 C -0.15 -1.34 8.06 37.99 0.31 -1.03 16 19 C -0.09 -0.91 3.43 -27.77 -0.10 -1.01 16 20 C -0.06 -0.64 0.69 -154.47 -0.11 -0.75 16 21 C -0.14 -1.42 7.93 37.03 0.29 -1.13 16 22 C -0.14 -1.47 8.08 37.93 0.31 -1.16 16 23 C -0.09 -1.28 3.34 -26.93 -0.09 -1.37 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.72 5.83 -51.93 -0.30 0.42 16 26 H 0.07 1.08 7.83 -51.93 -0.41 0.68 16 27 H 0.03 0.82 7.85 -51.93 -0.41 0.41 16 28 H 0.04 1.23 7.50 -51.93 -0.39 0.84 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.09 1.20 4.45 -52.13 -0.23 0.97 16 31 H 0.07 0.98 8.09 -51.73 -0.42 0.56 16 32 H 0.06 0.84 7.38 -51.74 -0.38 0.46 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.57 4.78 -51.93 -0.25 0.32 16 36 H 0.05 0.51 8.05 -51.92 -0.42 0.09 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.51 7.95 -51.31 -0.41 0.10 16 40 H 0.06 0.60 7.66 -51.31 -0.39 0.21 16 41 H 0.05 0.55 8.04 -51.93 -0.42 0.13 16 42 H 0.05 0.45 7.99 -51.93 -0.41 0.04 16 43 H 0.06 0.61 4.56 -51.93 -0.24 0.38 16 44 H 0.05 0.56 8.07 -51.93 -0.42 0.14 16 45 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.05 0.57 8.11 -51.93 -0.42 0.15 16 47 H 0.06 1.01 8.14 -51.84 -0.42 0.59 16 48 H 0.07 1.18 7.85 -51.85 -0.41 0.77 16 LS Contribution 359.74 15.07 5.42 5.42 Total: -1.00 -32.81 359.74 -7.49 -40.30 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -8.83 Total: -3.30 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 0.64 Total: -5.79 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.21 Total: -40.03 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.09 Total: -13.89 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.81 -7.49 -40.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596912635.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.345 kcal (2) G-P(sol) polarization free energy of solvation -32.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds