Wall clock time and date at job start Tue Mar 31 2020 06:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47382 * 2 1 4 4 C 1.52996 * 109.47362 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47185 * 300.00010 * 4 3 2 6 6 C 1.53000 * 109.47156 * 59.99767 * 4 3 2 7 7 C 1.53005 * 109.46886 * 57.03646 * 6 4 3 8 8 C 1.50695 * 109.47487 * 180.02562 * 4 3 2 9 9 O 1.21285 * 119.99614 * 6.42008 * 8 4 3 10 10 N 1.34776 * 120.00609 * 186.42568 * 8 4 3 11 11 C 1.46927 * 120.62620 * 355.06711 * 10 8 4 12 12 C 1.53189 * 108.77463 * 233.59067 * 11 10 8 13 13 C 1.53045 * 109.31253 * 305.36350 * 12 11 10 14 14 C 1.53038 * 109.53543 * 61.36515 * 13 12 11 15 15 H 1.09006 * 109.52491 * 58.60246 * 14 13 12 16 16 C 1.50702 * 109.49889 * 178.68167 * 14 13 12 17 17 H 1.07994 * 119.99941 * 119.83753 * 16 14 13 18 18 C 1.37881 * 119.99898 * 299.56998 * 16 14 13 19 19 N 1.31506 * 120.00236 * 359.97438 * 18 16 14 20 20 Si 1.86807 * 119.99795 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47050 * 59.99436 * 20 18 16 22 22 H 1.48498 * 109.46999 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47164 * 299.99710 * 20 18 16 24 24 C 1.46920 * 120.63237 * 175.04699 * 10 8 4 25 25 H 1.09001 * 109.47226 * 59.99647 * 1 2 3 26 26 H 1.08997 * 109.46991 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46690 * 299.99734 * 1 2 3 28 28 H 1.09004 * 109.46948 * 239.99867 * 2 1 3 29 29 H 1.09001 * 109.47226 * 120.00353 * 2 1 3 30 30 H 1.09000 * 109.46731 * 60.00182 * 3 2 1 31 31 H 1.09001 * 109.47228 * 300.00352 * 3 2 1 32 32 H 1.09004 * 109.47084 * 314.12284 * 5 4 3 33 33 H 1.09005 * 109.47147 * 74.11405 * 5 4 3 34 34 H 1.08994 * 109.47494 * 194.11961 * 5 4 3 35 35 H 1.09000 * 109.46731 * 177.02962 * 6 4 3 36 36 H 1.08992 * 109.47512 * 297.03184 * 6 4 3 37 37 H 1.08995 * 109.46481 * 299.99480 * 7 6 4 38 38 H 1.08996 * 109.46895 * 59.99998 * 7 6 4 39 39 H 1.09004 * 109.46788 * 179.97438 * 7 6 4 40 40 H 1.09002 * 109.58844 * 353.37554 * 11 10 8 41 41 H 1.08995 * 109.58761 * 113.80139 * 11 10 8 42 42 H 1.08997 * 109.50289 * 65.31620 * 12 11 10 43 43 H 1.09001 * 109.50242 * 185.41547 * 12 11 10 44 44 H 1.08998 * 109.45743 * 301.34938 * 13 12 11 45 45 H 1.09003 * 109.46303 * 181.38716 * 13 12 11 46 46 H 0.97001 * 119.99937 * 179.97438 * 19 18 16 47 47 H 1.09005 * 109.59009 * 6.62480 * 24 10 8 48 48 H 1.08999 * 109.70522 * 246.26809 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0806 0.7210 1.2483 6 6 4.0795 0.7213 -1.2502 7 6 3.5090 1.3984 -2.4980 8 6 4.0724 2.8632 0.0000 9 8 3.2905 3.7828 0.1183 10 7 5.3905 3.1120 -0.1310 11 6 6.3605 2.0091 -0.1671 12 6 7.4331 2.2607 0.8973 13 6 8.0474 3.6454 0.6793 14 6 6.9627 4.7151 0.8242 15 1 6.5142 4.6473 1.8155 16 6 7.5746 6.0801 0.6414 17 1 7.2303 6.7241 -0.1541 18 6 8.5703 6.5089 1.4934 19 7 8.9857 5.7270 2.4658 20 14 9.3294 8.2007 1.2663 21 1 8.2746 9.2379 1.3962 22 1 10.3691 8.4199 2.3037 23 1 9.9474 8.2891 -0.0810 24 6 5.8847 4.4913 -0.2409 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.5275 1.0692 2.1207 33 1 3.9364 -0.3532 1.1318 34 1 5.1413 0.9329 1.3822 35 1 5.1682 0.7673 -1.2776 36 1 3.7603 -0.3205 -1.2240 37 1 2.4203 1.3525 -2.4705 38 1 3.8283 2.4403 -2.5241 39 1 3.8723 0.8850 -3.3882 40 1 5.8518 1.0680 0.0422 41 1 6.8261 1.9640 -1.1516 42 1 6.9805 2.2154 1.8878 43 1 8.2107 1.5011 0.8171 44 1 8.4781 3.6982 -0.3206 45 1 8.8282 3.8171 1.4203 46 1 9.6864 6.0286 3.0649 47 1 5.0620 5.1881 -0.0804 48 1 6.3109 4.6512 -1.2313 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597904469.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:47 Heat of formation + Delta-G solvation = -54.445155 kcal Electronic energy + Delta-G solvation = -24150.712340 eV Core-core repulsion = 21011.943217 eV Total energy + Delta-G solvation = -3138.769123 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.58544 -37.33966 -36.39735 -33.79988 -32.72671 -31.24263 -30.65302 -29.90949 -26.69861 -25.25210 -25.02481 -23.62286 -22.65142 -21.65169 -20.50279 -19.02454 -18.12232 -16.47711 -15.88921 -15.78057 -15.53509 -14.97200 -14.55120 -14.05972 -13.86776 -13.67409 -13.50209 -13.15112 -12.94721 -12.75915 -12.62986 -12.32444 -12.10061 -11.94543 -11.85619 -11.73066 -11.62094 -11.22166 -10.95223 -10.94718 -10.81511 -10.73031 -10.72177 -10.41561 -10.33665 -10.15423 -9.86209 -9.69762 -9.41203 -9.06318 -8.76698 -8.36972 -7.82804 -6.00915 -4.07862 3.14280 3.31904 3.36209 3.39057 3.59917 4.43217 4.62437 4.65869 4.85714 5.03216 5.08318 5.15775 5.27481 5.28584 5.34518 5.45280 5.55995 5.59280 5.64639 5.68908 5.73545 5.79376 5.83750 5.88328 5.93440 5.96046 6.04938 6.10173 6.16262 6.23427 6.25421 6.34277 6.35533 6.43974 6.49893 6.52339 6.69231 6.84633 7.02587 7.19208 7.35365 7.70034 7.94380 8.07870 8.09746 8.39285 8.73992 8.95809 9.56837 11.04655 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.031141 B = 0.004227 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.919848 B = 6623.237298 C = 6810.989889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.095 4.095 4 C -0.078 4.078 5 C -0.155 4.155 6 C -0.131 4.131 7 C -0.155 4.155 8 C 0.521 3.479 9 O -0.552 6.552 10 N -0.600 5.600 11 C 0.090 3.910 12 C -0.137 4.137 13 C -0.111 4.111 14 C 0.041 3.959 15 H 0.029 0.971 16 C -0.515 4.515 17 H 0.056 0.944 18 C 0.064 3.936 19 N -0.889 5.889 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.116 3.884 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.094 0.906 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.035 0.965 45 H 0.094 0.906 46 H 0.261 0.739 47 H 0.077 0.923 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.161 -14.757 -5.752 18.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.133 4.133 4 C -0.081 4.081 5 C -0.212 4.212 6 C -0.168 4.168 7 C -0.212 4.212 8 C 0.308 3.692 9 O -0.430 6.430 10 N -0.331 5.331 11 C -0.032 4.032 12 C -0.175 4.175 13 C -0.149 4.149 14 C 0.022 3.978 15 H 0.047 0.953 16 C -0.553 4.553 17 H 0.074 0.926 18 C -0.138 4.138 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.005 4.005 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.112 0.888 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.053 0.947 45 H 0.112 0.888 46 H 0.070 0.930 47 H 0.095 0.905 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.433 -14.253 -5.543 17.968 hybrid contribution 0.618 0.948 -0.050 1.133 sum -8.815 -13.304 -5.592 16.911 Atomic orbital electron populations 1.21762 0.96105 1.01158 1.01876 1.21641 0.95591 0.97069 1.02043 1.21474 0.92159 0.96295 1.03341 1.20788 0.97197 0.93147 0.96952 1.22184 1.02499 1.00146 0.96386 1.22074 1.02138 0.99354 0.93247 1.21837 1.01259 1.01036 0.97057 1.20378 0.82162 0.90573 0.76050 1.90642 1.55268 1.46570 1.50563 1.48190 1.05286 1.08560 1.71085 1.22306 0.91175 0.90148 0.99589 1.22041 0.97084 1.00317 0.98061 1.21610 1.01099 0.91062 1.01128 1.18949 0.90811 0.94305 0.93733 0.95314 1.21051 1.19610 1.00020 1.14643 0.92596 1.24931 0.96657 0.97226 0.94956 1.69864 1.29419 1.36215 1.17292 0.86649 0.78916 0.84645 0.77741 1.20239 1.21320 1.20267 1.21963 0.98464 0.80022 1.00027 0.92869 0.93053 0.92774 0.91828 0.91855 0.91339 0.91212 0.91963 0.91572 0.90709 0.89854 0.91012 0.92293 0.92613 0.92772 0.88827 0.92191 0.92379 0.92537 0.94652 0.88783 0.92951 0.90454 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.13 -1.20 5.26 -26.73 -0.14 -1.34 16 3 C -0.09 -1.20 3.11 -26.73 -0.08 -1.28 16 4 C -0.08 -1.03 0.30 -155.66 -0.05 -1.08 16 5 C -0.16 -1.85 7.29 37.16 0.27 -1.58 16 6 C -0.13 -1.45 4.15 -26.73 -0.11 -1.56 16 7 C -0.15 -1.78 9.27 37.16 0.34 -1.43 16 8 C 0.52 9.45 5.36 -10.99 -0.06 9.39 16 9 O -0.55 -12.14 15.40 5.55 0.09 -12.05 16 10 N -0.60 -11.09 2.96 -172.77 -0.51 -11.60 16 11 C 0.09 1.39 3.82 -3.71 -0.01 1.37 16 12 C -0.14 -2.41 5.90 -26.61 -0.16 -2.57 16 13 C -0.11 -2.49 4.96 -26.69 -0.13 -2.62 16 14 C 0.04 1.02 2.24 -91.65 -0.21 0.81 16 15 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 16 C -0.51 -14.06 8.56 -34.44 -0.29 -14.35 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 19 N -0.89 -25.07 11.34 55.43 0.63 -24.44 16 20 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.12 2.55 5.66 -3.71 -0.02 2.53 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.56 6.50 -51.93 -0.34 0.22 16 29 H 0.06 0.57 6.77 -51.93 -0.35 0.22 16 30 H 0.07 0.97 8.03 -51.93 -0.42 0.56 16 31 H 0.07 0.94 6.37 -51.93 -0.33 0.61 16 32 H 0.06 0.78 8.07 -51.93 -0.42 0.36 16 33 H 0.07 0.61 7.15 -51.93 -0.37 0.24 16 34 H 0.07 0.95 4.81 -51.93 -0.25 0.70 16 35 H 0.08 0.92 4.38 -51.93 -0.23 0.70 16 36 H 0.07 0.65 6.56 -51.93 -0.34 0.31 16 37 H 0.06 0.65 6.37 -51.93 -0.33 0.32 16 38 H 0.05 0.78 7.31 -51.93 -0.38 0.40 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 1.18 2.82 -51.93 -0.15 1.03 16 41 H 0.06 0.87 8.00 -51.93 -0.42 0.45 16 42 H 0.06 1.08 7.91 -51.93 -0.41 0.67 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 46 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 47 H 0.08 1.84 7.00 -51.93 -0.36 1.48 16 48 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 346.98 15.07 5.23 5.23 Total: -1.00 -29.81 346.98 -8.30 -38.11 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -8.33 Total: 1.55 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -0.38 Total: -13.00 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.12 Total: -36.04 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.81 -8.30 -38.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904469.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.337 kcal (2) G-P(sol) polarization free energy of solvation -29.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds