Wall clock time and date at job start Tue Mar 31 2020 06:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46796 * 2 1 4 4 C 1.52998 * 109.46834 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.46829 * 60.00290 * 4 3 2 6 6 C 1.53002 * 109.47626 * 300.00358 * 4 3 2 7 7 C 1.52999 * 109.46897 * 306.45524 * 6 4 3 8 8 C 1.50695 * 109.47590 * 179.97438 * 4 3 2 9 9 O 1.21288 * 119.99779 * 1.84454 * 8 4 3 10 10 N 1.34771 * 120.00785 * 181.84414 * 8 4 3 11 11 C 1.46929 * 120.62820 * 355.16778 * 10 8 4 12 12 C 1.53189 * 108.77402 * 126.37003 * 11 10 8 13 13 C 1.53038 * 109.31182 * 54.63726 * 12 11 10 14 14 C 1.53040 * 109.54030 * 298.63429 * 13 12 11 15 15 H 1.09008 * 109.49623 * 301.38297 * 14 13 12 16 16 C 1.50698 * 109.50147 * 181.31785 * 14 13 12 17 17 H 1.08003 * 119.99975 * 240.00215 * 16 14 13 18 18 C 1.37876 * 120.00181 * 59.99904 * 16 14 13 19 19 N 1.31521 * 120.00027 * 0.02562 * 18 16 14 20 20 Si 1.86795 * 120.00464 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47015 * 89.99727 * 20 18 16 22 22 H 1.48500 * 109.47697 * 209.99885 * 20 18 16 23 23 H 1.48504 * 109.46945 * 330.00349 * 20 18 16 24 24 C 1.46928 * 120.63187 * 174.89293 * 10 8 4 25 25 H 1.08998 * 109.47093 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47228 * 299.99586 * 1 2 3 27 27 H 1.09001 * 109.47005 * 60.00248 * 1 2 3 28 28 H 1.09000 * 109.47128 * 120.00525 * 2 1 3 29 29 H 1.09004 * 109.47085 * 240.00128 * 2 1 3 30 30 H 1.08994 * 109.47294 * 300.00033 * 3 2 1 31 31 H 1.09000 * 109.46750 * 60.00392 * 3 2 1 32 32 H 1.08993 * 109.47079 * 51.53168 * 5 4 3 33 33 H 1.09002 * 109.46850 * 171.53050 * 5 4 3 34 34 H 1.09000 * 109.47422 * 291.52483 * 5 4 3 35 35 H 1.09007 * 109.46844 * 66.45358 * 6 4 3 36 36 H 1.09002 * 109.47014 * 186.45124 * 6 4 3 37 37 H 1.08997 * 109.46749 * 299.99631 * 7 6 4 38 38 H 1.09001 * 109.47128 * 59.99767 * 7 6 4 39 39 H 1.09000 * 109.46732 * 179.97438 * 7 6 4 40 40 H 1.09000 * 109.58725 * 246.16066 * 11 10 8 41 41 H 1.09004 * 109.58550 * 6.58330 * 11 10 8 42 42 H 1.08995 * 109.50061 * 174.58969 * 12 11 10 43 43 H 1.09006 * 109.49903 * 294.68447 * 12 11 10 44 44 H 1.08998 * 109.46215 * 58.65405 * 13 12 11 45 45 H 1.09004 * 109.46388 * 178.62684 * 13 12 11 46 46 H 0.97002 * 120.00466 * 180.02562 * 19 18 16 47 47 H 1.08995 * 109.58508 * 353.41475 * 24 10 8 48 48 H 1.09004 * 109.58233 * 113.84327 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0804 0.7211 -1.2484 6 6 4.0795 0.7214 1.2501 7 6 3.4409 1.3430 2.4938 8 6 4.0723 2.8633 0.0000 9 8 3.2847 3.7850 0.0329 10 7 5.3968 3.1098 -0.0371 11 6 6.3656 2.0072 0.0292 12 6 7.3203 2.1172 -1.1637 13 6 7.9536 3.5103 -1.1782 14 6 6.8594 4.5685 -1.3361 15 1 6.3098 4.3884 -2.2601 16 6 7.4867 5.9379 -1.3828 17 1 7.2257 6.6771 -0.6398 18 6 8.3940 6.2472 -2.3738 19 7 8.7116 5.3472 -3.2788 20 14 9.1722 7.9443 -2.4313 21 1 10.4231 7.9426 -1.6309 22 1 9.4858 8.2978 -3.8391 23 1 8.2264 8.9418 -1.8693 24 6 5.8992 4.4858 -0.1508 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.5991 1.1400 -2.1321 33 1 5.1599 0.8503 -1.3269 34 1 3.8460 -0.3409 -1.1759 35 1 3.8136 -0.3342 1.1942 36 1 5.1634 0.8204 1.3101 37 1 3.7069 2.3986 2.5496 38 1 2.3571 1.2441 2.4337 39 1 3.8036 0.8290 3.3839 40 1 6.9321 2.0739 0.9581 41 1 5.8379 1.0542 -0.0117 42 1 8.1022 1.3631 -1.0747 43 1 6.7660 1.9599 -2.0890 44 1 8.4871 3.6765 -0.2423 45 1 8.6520 3.5832 -2.0120 46 1 9.3502 5.5646 -3.9758 47 1 5.0641 5.1677 -0.3106 48 1 6.4270 4.7587 0.7631 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597904470.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:50 Heat of formation + Delta-G solvation = -53.358251 kcal Electronic energy + Delta-G solvation = -24159.809450 eV Core-core repulsion = 21021.087459 eV Total energy + Delta-G solvation = -3138.721992 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.59156 -37.36812 -36.41360 -33.78886 -32.73479 -31.25286 -30.70143 -29.88300 -26.66819 -25.25493 -25.02290 -23.65266 -22.63610 -21.64811 -20.50359 -19.02824 -18.09140 -16.48766 -15.89298 -15.80934 -15.57437 -14.95596 -14.56567 -14.06722 -13.84066 -13.68670 -13.56395 -13.14231 -12.95488 -12.76516 -12.61401 -12.31890 -12.07195 -11.94466 -11.81419 -11.74606 -11.54450 -11.22052 -10.97757 -10.93684 -10.80779 -10.71984 -10.70518 -10.41467 -10.33979 -10.14976 -9.88609 -9.70037 -9.42585 -9.04941 -8.77145 -8.37612 -7.84083 -6.01857 -4.08874 3.13889 3.29500 3.36408 3.40296 3.60411 4.42594 4.63090 4.66642 4.86397 5.03502 5.09001 5.16502 5.27049 5.28559 5.34495 5.46545 5.56362 5.58777 5.65215 5.68865 5.74090 5.82205 5.83862 5.88486 5.93043 5.96960 6.05599 6.11636 6.16397 6.22814 6.26701 6.33687 6.36963 6.44114 6.50863 6.52596 6.69369 6.85042 7.02059 7.18663 7.34794 7.69311 7.93081 8.07621 8.09368 8.38365 8.73607 8.95037 9.55992 11.03549 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.030193 B = 0.004243 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.131832 B = 6597.522403 C = 6751.683556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.095 4.095 4 C -0.077 4.077 5 C -0.160 4.160 6 C -0.128 4.128 7 C -0.155 4.155 8 C 0.521 3.479 9 O -0.553 6.553 10 N -0.600 5.600 11 C 0.088 3.912 12 C -0.137 4.137 13 C -0.111 4.111 14 C 0.040 3.960 15 H 0.028 0.972 16 C -0.513 4.513 17 H 0.057 0.943 18 C 0.063 3.937 19 N -0.889 5.889 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.118 3.882 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.096 0.904 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.035 0.965 45 H 0.095 0.905 46 H 0.260 0.740 47 H 0.077 0.923 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.625 -14.021 7.186 17.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.133 4.133 4 C -0.081 4.081 5 C -0.217 4.217 6 C -0.165 4.165 7 C -0.212 4.212 8 C 0.308 3.692 9 O -0.431 6.431 10 N -0.331 5.331 11 C -0.035 4.035 12 C -0.175 4.175 13 C -0.150 4.150 14 C 0.021 3.979 15 H 0.046 0.954 16 C -0.552 4.552 17 H 0.075 0.925 18 C -0.138 4.138 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.003 4.003 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.114 0.886 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.053 0.947 45 H 0.113 0.887 46 H 0.070 0.930 47 H 0.095 0.905 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.921 -13.531 7.047 17.673 hybrid contribution 0.641 0.930 -0.152 1.140 sum -8.280 -12.601 6.896 16.580 Atomic orbital electron populations 1.21762 0.96111 1.01154 1.01873 1.21649 0.95591 0.97085 1.02055 1.21474 0.92172 0.96288 1.03356 1.20785 0.97204 0.93127 0.96949 1.22290 1.02961 1.00090 0.96365 1.22002 1.01593 0.99605 0.93312 1.21852 1.01169 1.01211 0.96990 1.20383 0.82173 0.90614 0.75983 1.90638 1.55059 1.46423 1.51002 1.48201 1.04862 1.08808 1.71239 1.22346 0.91564 0.90390 0.99201 1.22053 0.97915 1.00497 0.97073 1.21616 1.00350 0.90984 1.02004 1.18886 0.91780 0.94778 0.92451 0.95380 1.21084 1.24402 0.97398 1.12332 0.92524 1.24932 0.96525 0.97014 0.95325 1.69874 1.33978 1.33594 1.15337 0.86584 0.79594 0.84604 0.77175 1.20701 1.21244 1.19859 1.21879 0.98304 0.80101 1.00061 0.93058 0.92864 0.92782 0.91830 0.91825 0.91523 0.90989 0.92039 0.90248 0.91634 0.90951 0.90134 0.92604 0.92131 0.92824 0.92193 0.88624 0.92544 0.92277 0.94658 0.88677 0.93007 0.90496 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.98 16 2 C -0.13 -1.22 5.19 -26.73 -0.14 -1.36 16 3 C -0.10 -1.21 3.03 -26.73 -0.08 -1.29 16 4 C -0.08 -1.04 0.30 -155.66 -0.05 -1.08 16 5 C -0.16 -1.96 7.48 37.16 0.28 -1.68 16 6 C -0.13 -1.42 4.08 -26.73 -0.11 -1.52 16 7 C -0.16 -1.76 9.21 37.16 0.34 -1.42 16 8 C 0.52 9.48 5.54 -10.99 -0.06 9.41 16 9 O -0.55 -12.08 15.42 5.55 0.09 -12.00 16 10 N -0.60 -11.13 2.97 -173.03 -0.51 -11.64 16 11 C 0.09 1.35 4.01 -3.71 -0.01 1.33 16 12 C -0.14 -2.40 5.74 -26.61 -0.15 -2.55 16 13 C -0.11 -2.49 4.96 -26.69 -0.13 -2.62 16 14 C 0.04 0.99 2.24 -91.88 -0.21 0.78 16 15 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 16 C -0.51 -13.99 8.56 -34.44 -0.29 -14.28 16 17 H 0.06 1.53 7.75 -52.48 -0.41 1.13 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 19 N -0.89 -24.94 11.31 55.43 0.63 -24.31 16 20 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.12 2.59 5.61 -3.93 -0.02 2.57 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.56 6.52 -51.93 -0.34 0.22 16 29 H 0.06 0.59 6.63 -51.93 -0.34 0.24 16 30 H 0.07 0.95 8.12 -51.93 -0.42 0.53 16 31 H 0.07 0.98 6.27 -51.93 -0.33 0.65 16 32 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 33 H 0.08 1.02 3.88 -51.93 -0.20 0.82 16 34 H 0.06 0.63 6.87 -51.93 -0.36 0.27 16 35 H 0.07 0.65 6.76 -51.92 -0.35 0.30 16 36 H 0.08 0.90 4.71 -51.93 -0.24 0.65 16 37 H 0.05 0.77 7.43 -51.93 -0.39 0.39 16 38 H 0.06 0.66 6.23 -51.93 -0.32 0.33 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.10 1.21 2.73 -51.93 -0.14 1.06 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 1.08 7.49 -51.93 -0.39 0.69 16 44 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.09 2.41 6.04 -51.93 -0.31 2.10 16 46 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 47 H 0.08 1.83 7.04 -51.93 -0.37 1.47 16 48 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 345.92 15.07 5.21 5.21 Total: -1.00 -29.64 345.92 -8.25 -37.89 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -8.27 Total: 1.75 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -0.37 Total: -13.06 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.11 Total: -35.95 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.09 Total: -12.00 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.64 -8.25 -37.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904470.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.468 kcal (2) G-P(sol) polarization free energy of solvation -29.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds