Wall clock time and date at job start Tue Mar 31 2020 06:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46888 * 2 1 4 4 C 1.52999 * 109.46959 * 297.31397 * 3 2 1 5 5 C 1.52999 * 109.47351 * 296.15901 * 4 3 2 6 6 C 1.52989 * 109.47248 * 57.31486 * 3 2 1 7 7 H 1.09003 * 109.47601 * 300.00215 * 6 3 2 8 8 C 1.52999 * 109.47213 * 60.00067 * 6 3 2 9 9 C 1.50702 * 109.47495 * 180.02562 * 6 3 2 10 10 O 1.21286 * 119.99419 * 349.16965 * 9 6 3 11 11 N 1.34775 * 120.00618 * 169.16748 * 9 6 3 12 12 C 1.46919 * 120.63262 * 177.27974 * 11 9 6 13 13 C 1.53198 * 108.89335 * 126.46118 * 12 11 9 14 14 C 1.53043 * 109.31044 * 54.56487 * 13 12 11 15 15 C 1.53044 * 109.53828 * 298.63606 * 14 13 12 16 16 H 1.09002 * 109.49527 * 301.38497 * 15 14 13 17 17 C 1.50695 * 109.49484 * 181.31701 * 15 14 13 18 18 H 1.08000 * 119.99974 * 239.98996 * 17 15 14 19 19 C 1.37874 * 119.99878 * 60.00457 * 17 15 14 20 20 N 1.31513 * 120.00503 * 359.97438 * 19 17 15 21 21 Si 1.86805 * 119.99828 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47465 * 89.99540 * 21 19 17 23 23 H 1.48497 * 109.47045 * 209.99498 * 21 19 17 24 24 H 1.48502 * 109.47057 * 329.98918 * 21 19 17 25 25 C 1.46965 * 120.65118 * 357.09637 * 11 9 6 26 26 H 1.09000 * 109.46582 * 182.82947 * 1 2 3 27 27 H 1.09000 * 109.47174 * 302.82649 * 1 2 3 28 28 H 1.08989 * 109.47164 * 62.83152 * 1 2 3 29 29 H 1.09002 * 109.46980 * 239.99813 * 2 1 3 30 30 H 1.08997 * 109.47373 * 119.99863 * 2 1 3 31 31 H 1.08994 * 109.47042 * 177.31969 * 3 2 1 32 32 H 1.09004 * 109.47383 * 56.15808 * 4 3 2 33 33 H 1.08996 * 109.47057 * 176.15691 * 4 3 2 34 34 H 1.08997 * 109.47242 * 186.01509 * 5 4 3 35 35 H 1.08993 * 109.46973 * 306.01690 * 5 4 3 36 36 H 1.09000 * 109.47405 * 66.01867 * 5 4 3 37 37 H 1.08997 * 109.47071 * 63.29493 * 8 6 3 38 38 H 1.08998 * 109.47383 * 183.29382 * 8 6 3 39 39 H 1.09003 * 109.46958 * 303.29174 * 8 6 3 40 40 H 1.08996 * 109.58776 * 6.60300 * 12 11 9 41 41 H 1.09001 * 109.58579 * 246.31843 * 12 11 9 42 42 H 1.08997 * 109.49760 * 174.51371 * 13 12 11 43 43 H 1.09000 * 109.49303 * 294.61260 * 13 12 11 44 44 H 1.08995 * 109.45884 * 58.65230 * 14 13 12 45 45 H 1.08997 * 109.45661 * 178.62501 * 14 13 12 46 46 H 0.96999 * 120.00557 * 180.02562 * 20 19 17 47 47 H 1.09000 * 109.46308 * 113.74882 * 25 11 9 48 48 H 1.09001 * 109.59182 * 353.39703 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5859 2.1439 -1.2817 5 6 2.2276 1.4615 -2.4914 6 6 1.4756 2.1830 1.2140 7 1 0.3866 2.1826 1.1659 8 6 1.9297 1.4816 2.4957 9 6 1.9774 3.6040 1.2137 10 8 2.8611 3.9348 0.4517 11 7 1.4441 4.5072 2.0600 12 6 1.9630 5.8807 2.1132 13 6 0.7995 6.8584 1.9196 14 6 -0.2908 6.5581 2.9508 15 6 -0.8152 5.1356 2.7418 16 1 -1.2083 5.0379 1.7298 17 6 -1.9110 4.8523 3.7367 18 1 -1.8040 4.0410 4.4414 19 6 -3.0503 5.6288 3.7470 20 7 -3.1806 6.6169 2.8890 21 14 -4.4090 5.2771 4.9799 22 1 -4.1660 6.0567 6.2202 23 1 -5.7183 5.6678 4.3983 24 1 -4.4230 3.8273 5.3010 25 6 0.3299 4.1386 2.9446 26 1 -0.3632 -1.0264 0.0507 27 1 -0.3633 0.5571 0.8636 28 1 -0.3633 0.4692 -0.9142 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.1289 1.4429 0.0481 32 1 0.5007 2.0837 -1.3639 33 1 1.8904 3.1900 -1.2508 34 1 1.9908 2.0245 -3.3941 35 1 3.3088 1.4269 -2.3579 36 1 1.8403 0.4468 -2.5840 37 1 3.0157 1.5333 2.5729 38 1 1.4803 1.9738 3.3581 39 1 1.6166 0.4378 2.4691 40 1 2.6972 6.0249 1.3206 41 1 2.4312 6.0572 3.0816 42 1 1.1562 7.8795 2.0541 43 1 0.3918 6.7442 0.9152 44 1 0.1242 6.6482 3.9546 45 1 -1.1092 7.2680 2.8310 46 1 -3.9820 7.1634 2.8965 47 1 0.6635 4.1712 3.9818 48 1 -0.0133 3.1332 2.7005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597906360.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:57 Heat of formation + Delta-G solvation = -71.903278 kcal Electronic energy + Delta-G solvation = -24067.099385 eV Core-core repulsion = 20927.573220 eV Total energy + Delta-G solvation = -3139.526164 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.15275 -37.67530 -36.33669 -33.40282 -32.67909 -31.25015 -30.66330 -29.98383 -26.43280 -25.30926 -24.92109 -23.82936 -22.34771 -21.50638 -20.02488 -18.83930 -18.08643 -16.99701 -16.16679 -15.71315 -15.32380 -14.79883 -14.56774 -14.21645 -13.72268 -13.39270 -13.19884 -13.08294 -12.90693 -12.73815 -12.59070 -12.41760 -12.18862 -11.96106 -11.81268 -11.68508 -11.44300 -11.21250 -11.03127 -10.90676 -10.80054 -10.74656 -10.34577 -10.27900 -10.13015 -10.06623 -9.97198 -9.75226 -9.54024 -9.01452 -8.87643 -8.43414 -7.86451 -6.07200 -4.15852 3.12638 3.24989 3.32639 3.34377 3.60054 4.36285 4.73702 4.88807 4.94399 5.21352 5.22238 5.35314 5.40653 5.45634 5.49266 5.56782 5.63970 5.74925 5.76929 5.81952 5.85310 5.93525 5.98342 6.02331 6.06381 6.07761 6.12185 6.21886 6.25149 6.28269 6.32702 6.32918 6.40957 6.55627 6.56751 6.60612 6.72335 6.79158 7.00724 7.16644 7.33367 7.63493 7.86313 7.97792 8.07865 8.31313 8.70952 8.88098 9.49807 10.97892 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017565 B = 0.005216 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.660924 B = 5366.753313 C = 6131.138082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.121 4.121 3 C -0.064 4.064 4 C -0.130 4.130 5 C -0.146 4.146 6 C -0.110 4.110 7 H 0.100 0.900 8 C -0.146 4.146 9 C 0.517 3.483 10 O -0.560 6.560 11 N -0.602 5.602 12 C 0.114 3.886 13 C -0.133 4.133 14 C -0.112 4.112 15 C 0.039 3.961 16 H 0.030 0.970 17 C -0.517 4.517 18 H 0.057 0.943 19 C 0.065 3.935 20 N -0.886 5.886 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.110 3.890 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.035 0.965 45 H 0.095 0.905 46 H 0.261 0.739 47 H 0.057 0.943 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.337 -9.233 -3.797 13.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.158 4.158 3 C -0.083 4.083 4 C -0.167 4.167 5 C -0.203 4.203 6 C -0.131 4.131 7 H 0.118 0.882 8 C -0.204 4.204 9 C 0.306 3.694 10 O -0.440 6.440 11 N -0.334 5.334 12 C -0.009 4.009 13 C -0.172 4.172 14 C -0.150 4.150 15 C 0.020 3.980 16 H 0.048 0.952 17 C -0.556 4.556 18 H 0.075 0.925 19 C -0.137 4.137 20 N -0.525 5.525 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.011 4.011 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.053 0.947 45 H 0.113 0.887 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.665 -8.910 -4.235 13.131 hybrid contribution -0.942 0.011 0.779 1.222 sum 7.724 -8.899 -3.455 12.280 Atomic orbital electron populations 1.21915 0.95902 1.01272 1.02552 1.21635 0.96244 0.96288 1.01663 1.20944 1.00392 0.93674 0.93247 1.21737 1.00037 1.01372 0.93572 1.21742 1.00643 1.00042 0.97867 1.21403 1.02537 0.92087 0.97035 0.88196 1.21863 1.01551 1.00780 0.96179 1.20574 0.82002 0.87335 0.79490 1.90583 1.32265 1.80832 1.40334 1.48307 1.34914 1.10846 1.39298 1.21540 0.96747 0.81417 1.01164 1.21986 0.96794 0.97051 1.01335 1.21624 0.96792 1.01646 0.94945 1.18981 0.90730 0.90456 0.97842 0.95230 1.21048 1.01424 1.15554 1.17577 0.92480 1.24934 0.98142 0.94992 0.95617 1.69874 1.27849 1.18913 1.35841 0.86606 0.81439 0.78654 0.81369 1.20671 1.21240 1.19858 1.22200 0.86656 1.00162 0.92108 0.93199 0.92012 0.92419 0.91867 0.91969 0.90759 0.92299 0.90201 0.93303 0.92999 0.93136 0.92569 0.91566 0.91362 0.90378 0.92515 0.92657 0.92530 0.94651 0.88711 0.92895 0.92495 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.21 37.16 0.34 -1.40 16 2 C -0.12 -1.30 5.08 -26.73 -0.14 -1.44 16 3 C -0.06 -0.84 1.38 -90.63 -0.13 -0.96 16 4 C -0.13 -1.81 4.95 -26.73 -0.13 -1.94 16 5 C -0.15 -1.71 9.49 37.16 0.35 -1.36 16 6 C -0.11 -1.59 1.04 -91.78 -0.10 -1.69 16 7 H 0.10 1.50 5.13 -51.93 -0.27 1.24 16 8 C -0.15 -1.84 8.63 37.16 0.32 -1.52 16 9 C 0.52 9.24 6.43 -10.99 -0.07 9.17 16 10 O -0.56 -11.18 13.58 5.55 0.08 -11.10 16 11 N -0.60 -11.12 2.98 -172.74 -0.51 -11.63 16 12 C 0.11 2.05 6.43 -3.71 -0.02 2.03 16 13 C -0.13 -2.56 6.08 -26.61 -0.16 -2.72 16 14 C -0.11 -2.51 4.96 -26.69 -0.13 -2.64 16 15 C 0.04 0.91 2.25 -91.66 -0.21 0.70 16 16 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 17 C -0.52 -13.19 8.56 -34.44 -0.29 -13.48 16 18 H 0.06 1.41 7.74 -52.49 -0.41 1.01 16 19 C 0.07 1.71 5.30 -17.82 -0.09 1.61 16 20 N -0.89 -24.27 11.31 55.43 0.63 -23.64 16 21 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 C 0.11 2.12 4.42 -3.69 -0.02 2.10 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.73 6.22 -51.93 -0.32 0.40 16 28 H 0.06 0.65 6.56 -51.94 -0.34 0.31 16 29 H 0.06 0.63 6.54 -51.93 -0.34 0.29 16 30 H 0.06 0.62 6.50 -51.93 -0.34 0.28 16 31 H 0.07 1.05 7.98 -51.93 -0.41 0.64 16 32 H 0.06 0.81 6.37 -51.93 -0.33 0.48 16 33 H 0.08 1.35 5.84 -51.93 -0.30 1.04 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.52 6.78 -51.93 -0.35 0.17 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.87 6.30 -51.93 -0.33 0.54 16 39 H 0.07 0.73 6.32 -51.93 -0.33 0.40 16 40 H 0.08 1.41 7.00 -51.93 -0.36 1.04 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.09 2.41 6.04 -51.93 -0.31 2.10 16 46 H 0.26 6.86 8.31 -40.82 -0.34 6.53 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 48 H 0.07 1.31 4.98 -51.93 -0.26 1.05 16 LS Contribution 348.97 15.07 5.26 5.26 Total: -1.00 -27.52 348.97 -8.42 -35.93 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -8.37 Total: 3.46 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -0.47 Total: -13.54 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.11 Total: -35.27 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.08 Total: -11.10 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.52 -8.42 -35.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906360.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.970 kcal (2) G-P(sol) polarization free energy of solvation -27.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds