Wall clock time and date at job start Tue Mar 31 2020 06:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46888 * 2 1 4 4 C 1.52999 * 109.46959 * 297.31397 * 3 2 1 5 5 C 1.52999 * 109.47351 * 296.15901 * 4 3 2 6 6 C 1.52989 * 109.47248 * 57.31486 * 3 2 1 7 7 H 1.09003 * 109.47601 * 300.00215 * 6 3 2 8 8 C 1.52999 * 109.47213 * 60.00067 * 6 3 2 9 9 C 1.50702 * 109.47495 * 180.02562 * 6 3 2 10 10 O 1.21286 * 119.99419 * 349.16965 * 9 6 3 11 11 N 1.34775 * 120.00618 * 169.16748 * 9 6 3 12 12 C 1.46919 * 120.63262 * 177.27974 * 11 9 6 13 13 C 1.53198 * 108.89335 * 126.46118 * 12 11 9 14 14 C 1.53043 * 109.31044 * 54.56487 * 13 12 11 15 15 C 1.53044 * 109.53828 * 298.63606 * 14 13 12 16 16 H 1.09002 * 109.49527 * 301.38497 * 15 14 13 17 17 C 1.50695 * 109.49484 * 181.31701 * 15 14 13 18 18 H 1.08000 * 119.99974 * 239.98996 * 17 15 14 19 19 C 1.37874 * 119.99878 * 60.00457 * 17 15 14 20 20 N 1.31513 * 120.00503 * 359.97438 * 19 17 15 21 21 Si 1.86805 * 119.99828 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47465 * 89.99540 * 21 19 17 23 23 H 1.48497 * 109.47045 * 209.99498 * 21 19 17 24 24 H 1.48502 * 109.47057 * 329.98918 * 21 19 17 25 25 C 1.46965 * 120.65118 * 357.09637 * 11 9 6 26 26 H 1.09000 * 109.46582 * 182.82947 * 1 2 3 27 27 H 1.09000 * 109.47174 * 302.82649 * 1 2 3 28 28 H 1.08989 * 109.47164 * 62.83152 * 1 2 3 29 29 H 1.09002 * 109.46980 * 239.99813 * 2 1 3 30 30 H 1.08997 * 109.47373 * 119.99863 * 2 1 3 31 31 H 1.08994 * 109.47042 * 177.31969 * 3 2 1 32 32 H 1.09004 * 109.47383 * 56.15808 * 4 3 2 33 33 H 1.08996 * 109.47057 * 176.15691 * 4 3 2 34 34 H 1.08997 * 109.47242 * 186.01509 * 5 4 3 35 35 H 1.08993 * 109.46973 * 306.01690 * 5 4 3 36 36 H 1.09000 * 109.47405 * 66.01867 * 5 4 3 37 37 H 1.08997 * 109.47071 * 63.29493 * 8 6 3 38 38 H 1.08998 * 109.47383 * 183.29382 * 8 6 3 39 39 H 1.09003 * 109.46958 * 303.29174 * 8 6 3 40 40 H 1.08996 * 109.58776 * 6.60300 * 12 11 9 41 41 H 1.09001 * 109.58579 * 246.31843 * 12 11 9 42 42 H 1.08997 * 109.49760 * 174.51371 * 13 12 11 43 43 H 1.09000 * 109.49303 * 294.61260 * 13 12 11 44 44 H 1.08995 * 109.45884 * 58.65230 * 14 13 12 45 45 H 1.08997 * 109.45661 * 178.62501 * 14 13 12 46 46 H 0.96999 * 120.00557 * 180.02562 * 20 19 17 47 47 H 1.09000 * 109.46308 * 113.74882 * 25 11 9 48 48 H 1.09001 * 109.59182 * 353.39703 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5859 2.1439 -1.2817 5 6 2.2276 1.4615 -2.4914 6 6 1.4756 2.1830 1.2140 7 1 0.3866 2.1826 1.1659 8 6 1.9297 1.4816 2.4957 9 6 1.9774 3.6040 1.2137 10 8 2.8611 3.9348 0.4517 11 7 1.4441 4.5072 2.0600 12 6 1.9630 5.8807 2.1132 13 6 0.7995 6.8584 1.9196 14 6 -0.2908 6.5581 2.9508 15 6 -0.8152 5.1356 2.7418 16 1 -1.2083 5.0379 1.7298 17 6 -1.9110 4.8523 3.7367 18 1 -1.8040 4.0410 4.4414 19 6 -3.0503 5.6288 3.7470 20 7 -3.1806 6.6169 2.8890 21 14 -4.4090 5.2771 4.9799 22 1 -4.1660 6.0567 6.2202 23 1 -5.7183 5.6678 4.3983 24 1 -4.4230 3.8273 5.3010 25 6 0.3299 4.1386 2.9446 26 1 -0.3632 -1.0264 0.0507 27 1 -0.3633 0.5571 0.8636 28 1 -0.3633 0.4692 -0.9142 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.1289 1.4429 0.0481 32 1 0.5007 2.0837 -1.3639 33 1 1.8904 3.1900 -1.2508 34 1 1.9908 2.0245 -3.3941 35 1 3.3088 1.4269 -2.3579 36 1 1.8403 0.4468 -2.5840 37 1 3.0157 1.5333 2.5729 38 1 1.4803 1.9738 3.3581 39 1 1.6166 0.4378 2.4691 40 1 2.6972 6.0249 1.3206 41 1 2.4312 6.0572 3.0816 42 1 1.1562 7.8795 2.0541 43 1 0.3918 6.7442 0.9152 44 1 0.1242 6.6482 3.9546 45 1 -1.1092 7.2680 2.8310 46 1 -3.9820 7.1634 2.8965 47 1 0.6635 4.1712 3.9818 48 1 -0.0133 3.1332 2.7005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597906360.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:56 Heat of formation + Delta-G solvation = -84.847278 kcal Electronic energy + Delta-G solvation = -24067.660679 eV Core-core repulsion = 20927.573220 eV Total energy + Delta-G solvation = -3140.087458 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.53296 -39.02867 -37.76320 -35.19506 -34.03836 -32.58889 -31.99557 -31.46960 -27.43301 -27.05296 -26.47958 -24.99679 -23.61342 -23.05000 -21.54765 -20.18151 -19.39614 -18.56590 -17.91674 -17.14329 -16.48478 -16.39227 -16.05272 -15.55265 -15.12422 -14.89484 -14.69900 -14.43239 -14.16559 -13.96345 -13.79965 -13.73677 -13.48418 -13.33123 -13.07981 -12.84209 -12.75015 -12.63892 -12.54591 -12.45576 -12.17144 -11.96252 -11.83020 -11.78368 -11.59832 -11.38180 -11.24885 -11.12784 -11.07191 -10.78098 -10.47081 -10.36187 -9.43731 -8.06574 -6.21966 1.44937 1.46751 1.55552 1.70960 2.17169 2.46947 3.21122 3.56166 3.73913 3.92612 4.08432 4.16050 4.22561 4.31124 4.38017 4.41115 4.45956 4.53994 4.55064 4.55593 4.61762 4.71525 4.80603 4.84813 4.85662 4.92273 4.96781 5.02809 5.05195 5.10112 5.11190 5.15193 5.27533 5.28747 5.33757 5.39962 5.42417 5.45723 5.53652 5.63869 5.67082 5.70357 5.93889 6.10612 6.34536 6.57672 6.90169 7.27228 7.47185 8.97304 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017565 B = 0.005216 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.660924 B = 5366.753313 C = 6131.138082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.113 4.113 3 C -0.059 4.059 4 C -0.130 4.130 5 C -0.141 4.141 6 C -0.107 4.107 7 H 0.094 0.906 8 C -0.141 4.141 9 C 0.512 3.488 10 O -0.582 6.582 11 N -0.608 5.608 12 C 0.116 3.884 13 C -0.123 4.123 14 C -0.106 4.106 15 C 0.037 3.963 16 H -0.009 1.009 17 C -0.528 4.528 18 H 0.064 0.936 19 C 0.015 3.985 20 N -0.918 5.918 21 Si 0.953 3.047 22 H -0.277 1.277 23 H -0.290 1.290 24 H -0.263 1.263 25 C 0.125 3.875 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.036 0.964 44 H 0.038 0.962 45 H 0.061 0.939 46 H 0.259 0.741 47 H 0.067 0.933 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.944 -11.340 -2.923 14.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.151 4.151 3 C -0.078 4.078 4 C -0.168 4.168 5 C -0.198 4.198 6 C -0.127 4.127 7 H 0.112 0.888 8 C -0.199 4.199 9 C 0.302 3.698 10 O -0.464 6.464 11 N -0.339 5.339 12 C -0.007 4.007 13 C -0.162 4.162 14 C -0.144 4.144 15 C 0.018 3.982 16 H 0.009 0.991 17 C -0.567 4.567 18 H 0.082 0.918 19 C -0.183 4.183 20 N -0.557 5.557 21 Si 0.779 3.221 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.187 1.187 25 C 0.003 3.997 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.085 0.915 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.283 -11.031 -3.355 14.802 hybrid contribution -1.129 0.712 0.453 1.409 sum 8.154 -10.319 -2.902 13.468 Atomic orbital electron populations 1.21918 0.96025 1.02045 1.01711 1.21604 0.95981 0.94393 1.03086 1.20923 0.99795 0.95073 0.91998 1.21694 0.99989 0.99715 0.95361 1.21702 1.00489 1.00834 0.96757 1.21462 1.02067 0.90220 0.98997 0.88761 1.21861 1.01618 1.01849 0.94545 1.21221 0.81521 0.88515 0.78520 1.90571 1.33393 1.81481 1.40934 1.48378 1.34782 1.11255 1.39512 1.21545 0.95990 0.80972 1.02188 1.21864 0.96316 0.98932 0.99049 1.21450 0.96636 1.00339 0.95974 1.18917 0.91921 0.92230 0.95152 0.99132 1.21434 1.02066 1.15422 1.17770 0.91761 1.25701 1.00464 0.94908 0.97264 1.70030 1.28303 1.19896 1.37481 0.85635 0.78445 0.78918 0.79129 1.20286 1.21611 1.18743 1.21953 0.85495 0.99491 0.92728 0.91555 0.93064 0.93163 0.90552 0.90445 0.91564 0.92607 0.93716 0.93189 0.92980 0.91221 0.92377 0.92017 0.88921 0.90355 0.90617 0.90390 0.94551 0.94348 0.92038 0.93175 0.91511 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 9.21 71.98 0.66 -2.47 16 2 C -0.11 -2.13 5.08 30.60 0.16 -1.97 16 3 C -0.06 -1.47 1.38 -10.80 -0.01 -1.49 16 4 C -0.13 -3.59 4.95 30.59 0.15 -3.44 16 5 C -0.14 -3.13 9.49 71.98 0.68 -2.44 16 6 C -0.11 -2.98 1.04 -11.54 -0.01 -2.99 16 7 H 0.09 2.77 5.13 -2.39 -0.01 2.76 16 8 C -0.14 -3.22 8.63 71.98 0.62 -2.60 16 9 C 0.51 18.14 6.43 87.66 0.56 18.70 16 10 O -0.58 -23.33 13.58 -3.05 -0.04 -23.37 16 11 N -0.61 -22.19 2.98 -818.82 -2.44 -24.63 16 12 C 0.12 4.08 6.43 86.37 0.56 4.64 16 13 C -0.12 -4.77 6.08 30.67 0.19 -4.58 16 14 C -0.11 -4.82 4.96 30.62 0.15 -4.67 16 15 C 0.04 1.75 2.25 -11.46 -0.03 1.72 16 16 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 17 C -0.53 -26.96 8.56 25.60 0.22 -26.74 16 18 H 0.06 3.12 7.74 -2.91 -0.02 3.09 16 19 C 0.02 0.82 5.30 84.65 0.45 1.26 16 20 N -0.92 -51.53 11.31 21.45 0.24 -51.29 16 21 Si 0.95 41.53 29.54 68.60 2.03 43.56 16 22 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 25 C 0.13 4.73 4.42 86.35 0.38 5.11 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.05 1.11 6.22 -2.39 -0.01 1.10 16 28 H 0.05 1.05 6.56 -2.39 -0.02 1.03 16 29 H 0.08 1.27 6.54 -2.39 -0.02 1.25 16 30 H 0.08 1.25 6.50 -2.39 -0.02 1.23 16 31 H 0.07 1.78 7.98 -2.39 -0.02 1.76 16 32 H 0.06 1.54 6.37 -2.38 -0.02 1.53 16 33 H 0.04 1.55 5.84 -2.39 -0.01 1.53 16 34 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 1.28 6.78 -2.39 -0.02 1.26 16 37 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.06 1.47 6.30 -2.39 -0.02 1.45 16 39 H 0.09 1.66 6.32 -2.39 -0.02 1.65 16 40 H 0.08 2.79 7.00 -2.39 -0.02 2.77 16 41 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 43 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.06 3.23 6.04 -2.39 -0.01 3.21 16 46 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 47 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 48 H 0.09 3.02 4.98 -2.39 -0.01 3.00 16 Total: -1.00 -60.11 348.97 5.44 -54.68 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 0.92 Total: 23.03 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: 4.73 Total: -21.97 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: -2.20 Total: -75.92 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.04 Total: -23.37 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -60.11 5.44 -54.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906360.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.171 kcal (2) G-P(sol) polarization free energy of solvation -60.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds