Wall clock time and date at job start Tue Mar 31 2020 06:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47018 * 2 1 4 4 C 1.53001 * 109.47257 * 60.33766 * 3 2 1 5 5 C 1.52999 * 109.47064 * 65.00187 * 4 3 2 6 6 C 1.53003 * 109.47099 * 300.33840 * 3 2 1 7 7 H 1.09003 * 109.46610 * 65.27508 * 6 3 2 8 8 C 1.52998 * 109.46854 * 305.27495 * 6 3 2 9 9 C 1.50703 * 109.47111 * 185.27440 * 6 3 2 10 10 O 1.21280 * 119.99898 * 7.87036 * 9 6 3 11 11 N 1.34775 * 119.99719 * 187.87335 * 9 6 3 12 12 C 1.46927 * 120.63132 * 3.44823 * 11 9 6 13 13 C 1.53193 * 108.77548 * 126.36929 * 12 11 9 14 14 C 1.53042 * 109.31346 * 54.63321 * 13 12 11 15 15 C 1.53043 * 109.53816 * 298.63717 * 14 13 12 16 16 H 1.09001 * 109.49628 * 301.37856 * 15 14 13 17 17 C 1.50703 * 109.49649 * 181.31193 * 15 14 13 18 18 H 1.08000 * 120.00149 * 239.99682 * 17 15 14 19 19 C 1.37880 * 119.99542 * 60.00011 * 17 15 14 20 20 N 1.31513 * 120.00294 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 119.99777 * 179.97438 * 19 17 15 22 22 H 1.48510 * 109.46827 * 60.00127 * 21 19 17 23 23 H 1.48501 * 109.47451 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47381 * 300.00596 * 21 19 17 25 25 C 1.46928 * 120.62849 * 183.16944 * 11 9 6 26 26 H 1.09008 * 109.46778 * 176.70553 * 1 2 3 27 27 H 1.08992 * 109.47319 * 56.70823 * 1 2 3 28 28 H 1.08999 * 109.47022 * 296.70108 * 1 2 3 29 29 H 1.09005 * 109.47417 * 119.99496 * 2 1 3 30 30 H 1.08994 * 109.47597 * 239.99549 * 2 1 3 31 31 H 1.08997 * 109.47577 * 180.33773 * 3 2 1 32 32 H 1.09002 * 109.47473 * 185.00288 * 4 3 2 33 33 H 1.08999 * 109.47002 * 305.00424 * 4 3 2 34 34 H 1.08999 * 109.47510 * 60.00441 * 5 4 3 35 35 H 1.09001 * 109.47046 * 180.02562 * 5 4 3 36 36 H 1.09003 * 109.47259 * 299.99597 * 5 4 3 37 37 H 1.08995 * 109.47141 * 65.73012 * 8 6 3 38 38 H 1.08999 * 109.46856 * 185.72970 * 8 6 3 39 39 H 1.09000 * 109.46925 * 305.72901 * 8 6 3 40 40 H 1.08995 * 109.58691 * 246.15460 * 12 11 9 41 41 H 1.09003 * 109.59044 * 6.58390 * 12 11 9 42 42 H 1.08999 * 109.50014 * 174.58449 * 13 12 11 43 43 H 1.09006 * 109.49682 * 294.68425 * 13 12 11 44 44 H 1.09003 * 109.45884 * 58.65659 * 14 13 12 45 45 H 1.08997 * 109.46530 * 178.62843 * 14 13 12 46 46 H 0.96998 * 119.99820 * 180.02562 * 20 19 17 47 47 H 1.08994 * 109.58628 * 353.41807 * 25 11 9 48 48 H 1.09000 * 109.58631 * 113.84839 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5369 2.1613 1.2535 5 6 2.1539 1.5139 2.4948 6 6 1.5230 2.1662 -1.2450 7 1 0.4373 2.2486 -1.1927 8 6 1.9149 1.3749 -2.4944 9 6 2.1287 3.5445 -1.3127 10 8 3.0035 3.8613 -0.5346 11 7 1.6983 4.4250 -2.2378 12 6 0.5883 4.0828 -3.1376 13 6 -0.4786 5.1780 -3.0430 14 6 0.1647 6.5373 -3.3270 15 6 1.2434 6.8220 -2.2794 16 1 0.7969 6.8104 -1.2851 17 6 1.8539 8.1747 -2.5409 18 1 2.9110 8.2597 -2.7451 19 6 1.0629 9.3038 -2.5194 20 7 -0.2242 9.2004 -2.2701 21 14 1.8198 10.9807 -2.8428 22 1 2.4296 10.9956 -4.1968 23 1 0.7655 12.0235 -2.7627 24 1 2.8661 11.2561 -1.8257 25 6 2.3262 5.7476 -2.3617 26 1 -0.3633 -1.0261 -0.0591 27 1 -0.3633 0.5640 -0.8589 28 1 -0.3633 0.4618 0.9181 29 1 1.8934 -0.5138 0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 3.1299 1.4426 -0.0061 32 1 1.8250 3.2117 1.2103 33 1 0.4509 2.0842 1.3053 34 1 3.2400 1.5910 2.4431 35 1 1.7952 2.0257 3.3879 36 1 1.8658 0.4636 2.5381 37 1 1.3957 0.4166 -2.4952 38 1 1.6368 1.9396 -3.3842 39 1 2.9916 1.2048 -2.4938 40 1 0.9551 4.0176 -4.1619 41 1 0.1579 3.1267 -2.8398 42 1 -1.2627 4.9864 -3.7755 43 1 -0.9088 5.1813 -2.0414 44 1 0.6161 6.5251 -4.3191 45 1 -0.5971 7.3157 -3.2843 46 1 -0.7807 9.9947 -2.2554 47 1 3.0420 5.8894 -1.5521 48 1 2.8375 5.8209 -3.3215 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597906363.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:01 Heat of formation + Delta-G solvation = -70.953960 kcal Electronic energy + Delta-G solvation = -23867.957066 eV Core-core repulsion = 20728.472067 eV Total energy + Delta-G solvation = -3139.484999 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.17534 -37.73292 -36.34542 -33.68232 -32.32001 -31.20818 -30.97824 -29.92877 -26.55895 -25.31830 -24.98181 -23.82062 -22.25898 -21.68101 -20.06326 -18.77800 -18.19093 -16.99662 -16.24931 -15.70130 -15.29520 -14.91438 -14.54597 -14.09451 -13.78362 -13.42928 -13.40909 -13.03560 -12.95929 -12.80870 -12.59834 -12.52692 -12.19286 -12.03742 -11.87957 -11.78877 -11.49664 -11.32194 -10.96248 -10.95810 -10.76437 -10.74871 -10.39639 -10.33518 -10.21378 -10.15392 -9.93762 -9.74681 -9.41791 -9.10445 -8.79257 -8.37458 -7.84022 -6.01188 -4.08351 3.13634 3.31712 3.36075 3.38881 3.60356 4.43063 4.63875 4.77230 4.85074 5.08791 5.22218 5.23723 5.29169 5.31860 5.39244 5.44222 5.49115 5.59990 5.64157 5.68857 5.75014 5.83719 5.87031 5.89403 5.92629 6.03187 6.08984 6.11933 6.20792 6.24551 6.31728 6.34722 6.43051 6.50183 6.53788 6.63681 6.68888 6.83923 7.02282 7.18833 7.35120 7.69588 7.93722 8.07573 8.09254 8.38811 8.73760 8.95369 9.56459 11.04256 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025902 B = 0.004244 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.742413 B = 6595.948540 C = 6969.799630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.122 4.122 3 C -0.066 4.066 4 C -0.127 4.127 5 C -0.147 4.147 6 C -0.108 4.108 7 H 0.093 0.907 8 C -0.147 4.147 9 C 0.513 3.487 10 O -0.548 6.548 11 N -0.603 5.603 12 C 0.108 3.892 13 C -0.136 4.136 14 C -0.112 4.112 15 C 0.040 3.960 16 H 0.028 0.972 17 C -0.514 4.514 18 H 0.056 0.944 19 C 0.064 3.936 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.117 3.883 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.035 0.965 45 H 0.095 0.905 46 H 0.261 0.739 47 H 0.078 0.922 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.754 -17.836 0.930 17.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.159 4.159 3 C -0.085 4.085 4 C -0.164 4.164 5 C -0.204 4.204 6 C -0.129 4.129 7 H 0.111 0.889 8 C -0.205 4.205 9 C 0.301 3.699 10 O -0.427 6.427 11 N -0.335 5.335 12 C -0.015 4.015 13 C -0.174 4.174 14 C -0.150 4.150 15 C 0.021 3.979 16 H 0.046 0.954 17 C -0.553 4.553 18 H 0.074 0.926 19 C -0.137 4.137 20 N -0.528 5.528 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.004 4.004 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.054 0.946 45 H 0.113 0.887 46 H 0.071 0.929 47 H 0.096 0.904 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.448 -17.540 1.350 17.598 hybrid contribution 0.186 1.041 -0.301 1.099 sum -0.263 -16.499 1.049 16.535 Atomic orbital electron populations 1.21897 0.96139 1.01145 1.02251 1.21642 0.96039 0.96410 1.01811 1.20972 1.00894 0.93564 0.93042 1.21684 0.99732 1.01316 0.93683 1.21751 1.00966 1.00073 0.97645 1.21384 1.01570 0.92906 0.97071 0.88891 1.21901 1.02153 1.00047 0.96361 1.20519 0.82889 0.86388 0.80146 1.90631 1.32415 1.79001 1.40653 1.48289 1.34343 1.16367 1.34494 1.21807 0.87931 0.98284 0.93467 1.22018 0.96786 0.97377 1.01225 1.21624 1.00934 0.94151 0.98290 1.18876 0.91485 0.91747 0.95765 0.95379 1.21047 0.94766 0.90959 1.48535 0.92580 1.24928 0.94836 0.99009 0.94976 1.69862 1.04513 1.29166 1.49256 0.86648 0.78851 0.83605 0.78839 1.20265 1.21309 1.20230 1.21874 0.97318 0.80377 1.00826 0.93224 0.92439 0.92369 0.91801 0.91892 0.90415 0.90436 0.92393 0.92836 0.93205 0.93099 0.91487 0.91833 0.92229 0.92088 0.90921 0.92539 0.92433 0.94645 0.88678 0.92944 0.90382 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.20 37.16 0.34 -1.05 16 2 C -0.12 -1.15 4.97 -26.73 -0.13 -1.29 16 3 C -0.07 -0.81 1.40 -90.62 -0.13 -0.94 16 4 C -0.13 -1.68 4.99 -26.73 -0.13 -1.82 16 5 C -0.15 -1.69 9.67 37.16 0.36 -1.33 16 6 C -0.11 -1.41 0.95 -91.77 -0.09 -1.50 16 7 H 0.09 1.14 5.61 -51.93 -0.29 0.85 16 8 C -0.15 -1.58 8.11 37.16 0.30 -1.28 16 9 C 0.51 9.14 6.52 -10.98 -0.07 9.07 16 10 O -0.55 -11.63 13.76 5.56 0.08 -11.56 16 11 N -0.60 -11.13 2.98 -173.03 -0.52 -11.65 16 12 C 0.11 1.67 4.96 -3.71 -0.02 1.65 16 13 C -0.14 -2.41 6.08 -26.61 -0.16 -2.57 16 14 C -0.11 -2.51 4.96 -26.69 -0.13 -2.65 16 15 C 0.04 1.00 2.24 -91.87 -0.21 0.79 16 16 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 17 C -0.51 -14.02 8.56 -34.44 -0.29 -14.31 16 18 H 0.06 1.51 7.75 -52.49 -0.41 1.10 16 19 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 20 N -0.89 -25.04 11.31 55.43 0.63 -24.41 16 21 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 C 0.12 2.56 5.63 -3.93 -0.02 2.54 16 26 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 27 H 0.06 0.51 6.37 -51.93 -0.33 0.18 16 28 H 0.06 0.54 6.51 -51.93 -0.34 0.20 16 29 H 0.06 0.58 6.55 -51.93 -0.34 0.24 16 30 H 0.06 0.55 6.49 -51.93 -0.34 0.21 16 31 H 0.08 1.09 7.83 -51.93 -0.41 0.68 16 32 H 0.08 1.30 6.19 -51.93 -0.32 0.98 16 33 H 0.06 0.72 6.26 -51.93 -0.32 0.39 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.05 0.50 6.56 -51.93 -0.34 0.16 16 37 H 0.07 0.58 6.69 -51.93 -0.35 0.23 16 38 H 0.06 0.68 6.04 -51.93 -0.31 0.37 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.91 5.03 -51.93 -0.26 0.65 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.09 2.42 6.04 -51.93 -0.31 2.11 16 46 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 47 H 0.08 1.84 7.00 -51.93 -0.36 1.48 16 48 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 349.08 15.07 5.26 5.26 Total: -1.00 -29.32 349.08 -8.45 -37.77 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -8.40 Total: 1.43 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -0.48 Total: -13.02 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.11 Total: -36.06 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.08 Total: -11.56 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.32 -8.45 -37.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906363.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.185 kcal (2) G-P(sol) polarization free energy of solvation -29.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds