Wall clock time and date at job start Tue Mar 31 2020 06:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47018 * 2 1 4 4 C 1.53001 * 109.47257 * 60.33766 * 3 2 1 5 5 C 1.52999 * 109.47064 * 65.00187 * 4 3 2 6 6 C 1.53003 * 109.47099 * 300.33840 * 3 2 1 7 7 H 1.09003 * 109.46610 * 65.27508 * 6 3 2 8 8 C 1.52998 * 109.46854 * 305.27495 * 6 3 2 9 9 C 1.50703 * 109.47111 * 185.27440 * 6 3 2 10 10 O 1.21280 * 119.99898 * 7.87036 * 9 6 3 11 11 N 1.34775 * 119.99719 * 187.87335 * 9 6 3 12 12 C 1.46927 * 120.63132 * 3.44823 * 11 9 6 13 13 C 1.53193 * 108.77548 * 126.36929 * 12 11 9 14 14 C 1.53042 * 109.31346 * 54.63321 * 13 12 11 15 15 C 1.53043 * 109.53816 * 298.63717 * 14 13 12 16 16 H 1.09001 * 109.49628 * 301.37856 * 15 14 13 17 17 C 1.50703 * 109.49649 * 181.31193 * 15 14 13 18 18 H 1.08000 * 120.00149 * 239.99682 * 17 15 14 19 19 C 1.37880 * 119.99542 * 60.00011 * 17 15 14 20 20 N 1.31513 * 120.00294 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 119.99777 * 179.97438 * 19 17 15 22 22 H 1.48510 * 109.46827 * 60.00127 * 21 19 17 23 23 H 1.48501 * 109.47451 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47381 * 300.00596 * 21 19 17 25 25 C 1.46928 * 120.62849 * 183.16944 * 11 9 6 26 26 H 1.09008 * 109.46778 * 176.70553 * 1 2 3 27 27 H 1.08992 * 109.47319 * 56.70823 * 1 2 3 28 28 H 1.08999 * 109.47022 * 296.70108 * 1 2 3 29 29 H 1.09005 * 109.47417 * 119.99496 * 2 1 3 30 30 H 1.08994 * 109.47597 * 239.99549 * 2 1 3 31 31 H 1.08997 * 109.47577 * 180.33773 * 3 2 1 32 32 H 1.09002 * 109.47473 * 185.00288 * 4 3 2 33 33 H 1.08999 * 109.47002 * 305.00424 * 4 3 2 34 34 H 1.08999 * 109.47510 * 60.00441 * 5 4 3 35 35 H 1.09001 * 109.47046 * 180.02562 * 5 4 3 36 36 H 1.09003 * 109.47259 * 299.99597 * 5 4 3 37 37 H 1.08995 * 109.47141 * 65.73012 * 8 6 3 38 38 H 1.08999 * 109.46856 * 185.72970 * 8 6 3 39 39 H 1.09000 * 109.46925 * 305.72901 * 8 6 3 40 40 H 1.08995 * 109.58691 * 246.15460 * 12 11 9 41 41 H 1.09003 * 109.59044 * 6.58390 * 12 11 9 42 42 H 1.08999 * 109.50014 * 174.58449 * 13 12 11 43 43 H 1.09006 * 109.49682 * 294.68425 * 13 12 11 44 44 H 1.09003 * 109.45884 * 58.65659 * 14 13 12 45 45 H 1.08997 * 109.46530 * 178.62843 * 14 13 12 46 46 H 0.96998 * 119.99820 * 180.02562 * 20 19 17 47 47 H 1.08994 * 109.58628 * 353.41807 * 25 11 9 48 48 H 1.09000 * 109.58631 * 113.84839 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5369 2.1613 1.2535 5 6 2.1539 1.5139 2.4948 6 6 1.5230 2.1662 -1.2450 7 1 0.4373 2.2486 -1.1927 8 6 1.9149 1.3749 -2.4944 9 6 2.1287 3.5445 -1.3127 10 8 3.0035 3.8613 -0.5346 11 7 1.6983 4.4250 -2.2378 12 6 0.5883 4.0828 -3.1376 13 6 -0.4786 5.1780 -3.0430 14 6 0.1647 6.5373 -3.3270 15 6 1.2434 6.8220 -2.2794 16 1 0.7969 6.8104 -1.2851 17 6 1.8539 8.1747 -2.5409 18 1 2.9110 8.2597 -2.7451 19 6 1.0629 9.3038 -2.5194 20 7 -0.2242 9.2004 -2.2701 21 14 1.8198 10.9807 -2.8428 22 1 2.4296 10.9956 -4.1968 23 1 0.7655 12.0235 -2.7627 24 1 2.8661 11.2561 -1.8257 25 6 2.3262 5.7476 -2.3617 26 1 -0.3633 -1.0261 -0.0591 27 1 -0.3633 0.5640 -0.8589 28 1 -0.3633 0.4618 0.9181 29 1 1.8934 -0.5138 0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 3.1299 1.4426 -0.0061 32 1 1.8250 3.2117 1.2103 33 1 0.4509 2.0842 1.3053 34 1 3.2400 1.5910 2.4431 35 1 1.7952 2.0257 3.3879 36 1 1.8658 0.4636 2.5381 37 1 1.3957 0.4166 -2.4952 38 1 1.6368 1.9396 -3.3842 39 1 2.9916 1.2048 -2.4938 40 1 0.9551 4.0176 -4.1619 41 1 0.1579 3.1267 -2.8398 42 1 -1.2627 4.9864 -3.7755 43 1 -0.9088 5.1813 -2.0414 44 1 0.6161 6.5251 -4.3191 45 1 -0.5971 7.3157 -3.2843 46 1 -0.7807 9.9947 -2.2554 47 1 3.0420 5.8894 -1.5521 48 1 2.8375 5.8209 -3.3215 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597906363.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:01 Heat of formation + Delta-G solvation = -86.583009 kcal Electronic energy + Delta-G solvation = -23868.634792 eV Core-core repulsion = 20728.472067 eV Total energy + Delta-G solvation = -3140.162725 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.52339 -39.04519 -37.75947 -35.46925 -33.67687 -32.73104 -32.07093 -31.40983 -27.48056 -27.10997 -26.48532 -24.87628 -23.42726 -23.31393 -21.52680 -20.14339 -19.42430 -18.57594 -18.02016 -16.97395 -16.69846 -16.34736 -16.03852 -15.45079 -15.15547 -14.86996 -14.72834 -14.51210 -14.06973 -13.95436 -13.80318 -13.75104 -13.57430 -13.30376 -13.09083 -12.86097 -12.76935 -12.60658 -12.60410 -12.44100 -12.16999 -11.95741 -11.85084 -11.76742 -11.58220 -11.34989 -11.23874 -11.15031 -11.07528 -10.84923 -10.49192 -10.38868 -9.44138 -8.11756 -6.27403 1.39940 1.41656 1.49073 1.74232 2.16844 2.43190 3.14420 3.55644 3.73537 3.92033 4.06059 4.14286 4.24635 4.33451 4.38622 4.42194 4.45375 4.53306 4.56241 4.60866 4.62792 4.71216 4.81374 4.86665 4.89522 4.92998 4.97232 5.00900 5.06262 5.11879 5.12662 5.16561 5.28513 5.31592 5.34149 5.40241 5.43929 5.49113 5.54463 5.59024 5.60267 5.72014 5.92119 6.13334 6.33502 6.63773 6.82066 7.31241 7.40826 8.91657 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025902 B = 0.004244 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.742413 B = 6595.948540 C = 6969.799630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.114 4.114 3 C -0.063 4.063 4 C -0.127 4.127 5 C -0.143 4.143 6 C -0.099 4.099 7 H 0.109 0.891 8 C -0.144 4.144 9 C 0.504 3.496 10 O -0.591 6.591 11 N -0.609 5.609 12 C 0.109 3.891 13 C -0.129 4.129 14 C -0.105 4.105 15 C 0.042 3.958 16 H -0.018 1.018 17 C -0.541 4.541 18 H 0.051 0.949 19 C 0.018 3.982 20 N -0.913 5.913 21 Si 0.955 3.045 22 H -0.267 1.267 23 H -0.281 1.281 24 H -0.277 1.277 25 C 0.130 3.870 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.032 0.968 33 H 0.068 0.932 34 H 0.042 0.958 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.082 0.918 41 H 0.113 0.887 42 H 0.091 0.909 43 H 0.042 0.958 44 H 0.037 0.963 45 H 0.062 0.938 46 H 0.262 0.738 47 H 0.048 0.952 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.672 -20.452 -0.417 20.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.151 4.151 3 C -0.082 4.082 4 C -0.165 4.165 5 C -0.201 4.201 6 C -0.120 4.120 7 H 0.127 0.873 8 C -0.201 4.201 9 C 0.294 3.706 10 O -0.473 6.473 11 N -0.340 5.340 12 C -0.012 4.012 13 C -0.167 4.167 14 C -0.143 4.143 15 C 0.023 3.977 16 H 0.000 1.000 17 C -0.579 4.579 18 H 0.069 0.931 19 C -0.181 4.181 20 N -0.552 5.552 21 Si 0.780 3.220 22 H -0.192 1.192 23 H -0.206 1.206 24 H -0.202 1.202 25 C 0.008 3.992 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.131 0.869 42 H 0.109 0.891 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.080 0.920 46 H 0.071 0.929 47 H 0.067 0.933 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.380 -20.180 -0.012 20.227 hybrid contribution 0.483 1.890 0.184 1.960 sum -0.897 -18.290 0.172 18.313 Atomic orbital electron populations 1.21911 0.95243 1.02260 1.02079 1.21602 0.96667 0.93832 1.02986 1.20952 0.99640 0.95520 0.92101 1.21655 1.00496 0.98943 0.95386 1.21723 1.00177 1.01353 0.96798 1.21446 1.01884 0.89751 0.98877 0.87310 1.21934 1.02217 1.01116 0.94812 1.21544 0.82275 0.87984 0.78809 1.90613 1.34484 1.80064 1.42091 1.48376 1.35149 1.14988 1.35480 1.22053 0.86187 0.98911 0.94071 1.21935 0.98093 0.95309 1.01348 1.21416 0.99298 0.96255 0.97362 1.18773 0.92803 0.92094 0.94009 1.00002 1.21420 0.94777 0.92725 1.48987 0.93092 1.25684 0.95259 1.02485 0.94684 1.70002 1.05531 1.30021 1.49625 0.85666 0.78069 0.79290 0.78957 1.19189 1.20642 1.20246 1.21406 0.96001 0.81962 0.99877 0.91528 0.92119 0.93048 0.91141 0.90311 0.92592 0.94959 0.91312 0.93852 0.93143 0.90703 0.88269 0.91290 0.92908 0.89966 0.86889 0.89099 0.93939 0.94388 0.91988 0.92908 0.93322 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.20 71.98 0.66 -1.50 16 2 C -0.11 -1.77 4.97 30.59 0.15 -1.61 16 3 C -0.06 -1.47 1.40 -10.79 -0.02 -1.49 16 4 C -0.13 -3.38 4.99 30.59 0.15 -3.23 16 5 C -0.14 -3.22 9.67 71.98 0.70 -2.52 16 6 C -0.10 -2.37 0.95 -11.54 -0.01 -2.38 16 7 H 0.11 2.31 5.61 -2.39 -0.01 2.29 16 8 C -0.14 -2.55 8.11 71.98 0.58 -1.97 16 9 C 0.50 18.06 6.52 87.66 0.57 18.63 16 10 O -0.59 -26.38 13.76 -3.03 -0.04 -26.43 16 11 N -0.61 -22.37 2.98 -819.73 -2.44 -24.82 16 12 C 0.11 3.08 4.96 86.36 0.43 3.51 16 13 C -0.13 -4.38 6.08 30.67 0.19 -4.20 16 14 C -0.11 -4.79 4.96 30.62 0.15 -4.64 16 15 C 0.04 2.20 2.24 -11.60 -0.03 2.17 16 16 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 17 C -0.54 -30.63 8.56 25.60 0.22 -30.41 16 18 H 0.05 2.85 7.75 -2.91 -0.02 2.83 16 19 C 0.02 1.02 5.30 84.66 0.45 1.46 16 20 N -0.91 -52.94 11.31 21.45 0.24 -52.70 16 21 Si 0.95 44.19 29.54 68.60 2.03 46.22 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 25 C 0.13 5.92 5.63 86.22 0.49 6.41 16 26 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.06 0.80 6.37 -2.39 -0.02 0.78 16 28 H 0.05 0.78 6.51 -2.39 -0.02 0.76 16 29 H 0.07 1.03 6.55 -2.38 -0.02 1.02 16 30 H 0.08 1.02 6.49 -2.39 -0.02 1.00 16 31 H 0.06 1.56 7.83 -2.39 -0.02 1.54 16 32 H 0.03 1.14 6.19 -2.39 -0.01 1.13 16 33 H 0.07 1.64 6.26 -2.39 -0.01 1.62 16 34 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 1.31 6.56 -2.39 -0.02 1.30 16 37 H 0.10 1.18 6.69 -2.39 -0.02 1.16 16 38 H 0.07 1.18 6.04 -2.39 -0.01 1.16 16 39 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.11 2.32 5.03 -2.39 -0.01 2.30 16 42 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 43 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.06 3.24 6.04 -2.39 -0.01 3.23 16 46 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 47 H 0.05 2.46 7.00 -2.39 -0.02 2.44 16 48 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -68.81 349.08 5.39 -63.42 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.92 Total: 16.06 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: 4.69 Total: -21.76 kcal Atomic # 7 Polarization: -75.31 SS G_CDS: -2.20 Total: -77.51 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.04 Total: -26.43 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -68.81 5.39 -63.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906363.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.164 kcal (2) G-P(sol) polarization free energy of solvation -68.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds