Wall clock time and date at job start Tue Mar 31 2020 06:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46929 * 2 1 4 4 C 1.53002 * 109.47076 * 295.89627 * 3 2 1 5 5 C 1.52997 * 109.47090 * 295.21665 * 4 3 2 6 6 C 1.53002 * 109.47227 * 55.89794 * 3 2 1 7 7 H 1.09000 * 109.47018 * 300.00149 * 6 3 2 8 8 C 1.52995 * 109.47059 * 180.02562 * 6 3 2 9 9 C 1.50705 * 109.46871 * 59.99760 * 6 3 2 10 10 O 1.21281 * 120.00257 * 34.21914 * 9 6 3 11 11 N 1.34782 * 119.99733 * 214.21220 * 9 6 3 12 12 C 1.46922 * 120.63077 * 354.86301 * 11 9 6 13 13 C 1.53188 * 108.77743 * 233.58828 * 12 11 9 14 14 C 1.53044 * 109.31208 * 305.36848 * 13 12 11 15 15 C 1.53035 * 109.53931 * 61.36312 * 14 13 12 16 16 H 1.08998 * 109.49938 * 58.61922 * 15 14 13 17 17 C 1.50703 * 109.49925 * 178.68572 * 15 14 13 18 18 H 1.08001 * 119.99808 * 119.99952 * 17 15 14 19 19 C 1.37879 * 119.99711 * 300.00146 * 17 15 14 20 20 N 1.31513 * 119.99735 * 179.97438 * 19 17 15 21 21 Si 1.86802 * 120.00140 * 359.97438 * 19 17 15 22 22 H 1.48494 * 109.47105 * 90.00149 * 21 19 17 23 23 H 1.48497 * 109.46704 * 210.00211 * 21 19 17 24 24 H 1.48498 * 109.46825 * 329.99858 * 21 19 17 25 25 C 1.46923 * 120.62986 * 174.84515 * 11 9 6 26 26 H 1.09001 * 109.47173 * 184.52739 * 1 2 3 27 27 H 1.08995 * 109.47333 * 304.52736 * 1 2 3 28 28 H 1.09004 * 109.46989 * 64.53237 * 1 2 3 29 29 H 1.08994 * 109.47000 * 240.00109 * 2 1 3 30 30 H 1.08999 * 109.46921 * 119.99776 * 2 1 3 31 31 H 1.08998 * 109.46517 * 175.89674 * 3 2 1 32 32 H 1.09007 * 109.46999 * 55.21447 * 4 3 2 33 33 H 1.08995 * 109.46961 * 175.21316 * 4 3 2 34 34 H 1.09001 * 109.47092 * 185.31044 * 5 4 3 35 35 H 1.09003 * 109.46755 * 305.30340 * 5 4 3 36 36 H 1.08993 * 109.47526 * 65.30818 * 5 4 3 37 37 H 1.08999 * 109.47382 * 65.25842 * 8 6 3 38 38 H 1.09008 * 109.47043 * 185.26378 * 8 6 3 39 39 H 1.09007 * 109.47016 * 305.25974 * 8 6 3 40 40 H 1.08999 * 109.58328 * 113.80113 * 12 11 9 41 41 H 1.09004 * 109.58955 * 353.37406 * 12 11 9 42 42 H 1.08996 * 109.50159 * 185.41787 * 13 12 11 43 43 H 1.09000 * 109.52532 * 65.33063 * 13 12 11 44 44 H 1.09003 * 109.45588 * 301.34550 * 14 13 12 45 45 H 1.08999 * 109.45963 * 181.38610 * 14 13 12 46 46 H 0.97002 * 120.00174 * 179.97438 * 20 19 17 47 47 H 1.09002 * 109.58546 * 6.62036 * 25 11 9 48 48 H 1.09000 * 109.58220 * 246.20525 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6160 2.1334 -1.2977 5 6 2.3040 1.4559 -2.4844 6 6 1.4474 2.1930 1.1945 7 1 0.3599 2.1920 1.1209 8 6 1.9569 3.6356 1.1941 9 6 1.8651 1.5124 2.4726 10 8 2.9564 0.9894 2.5526 11 7 1.0258 1.4852 3.5269 12 6 -0.2520 2.2092 3.4854 13 6 -0.3384 3.1273 4.7086 14 6 -0.1256 2.3001 5.9785 15 6 1.2666 1.6652 5.9484 16 1 2.0216 2.4475 5.8705 17 6 1.4875 0.8772 7.2139 18 1 1.6855 -0.1832 7.1620 19 6 1.4368 1.5101 8.4378 20 7 1.6291 0.8223 9.5421 21 14 1.0949 3.3444 8.5273 22 1 -0.3692 3.5706 8.6285 23 1 1.7678 3.9155 9.7216 24 1 1.6145 4.0050 7.3031 25 6 1.3711 0.7305 4.7392 26 1 -0.3633 -1.0245 0.0811 27 1 -0.3634 0.5824 0.8466 28 1 -0.3633 0.4419 -0.9278 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.1275 1.4433 0.0735 32 1 0.5347 2.0577 -1.4130 33 1 1.9049 3.1837 -1.2613 34 1 2.0772 2.0054 -3.3981 35 1 3.3820 1.4481 -2.3233 36 1 1.9431 0.4316 -2.5774 37 1 1.5764 4.1551 0.3146 38 1 1.6107 4.1435 2.0943 39 1 3.0468 3.6361 1.1730 40 1 -1.0765 1.4965 3.5044 41 1 -0.3039 2.8070 2.5754 42 1 -1.3209 3.5981 4.7415 43 1 0.4314 3.8962 4.6421 44 1 -0.8811 1.5161 6.0320 45 1 -0.2110 2.9467 6.8517 46 1 1.5938 1.2676 10.4032 47 1 2.3902 0.3526 4.6565 48 1 0.6790 -0.1028 4.8604 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597906364.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:03 Heat of formation + Delta-G solvation = -63.161543 kcal Electronic energy + Delta-G solvation = -24000.199860 eV Core-core repulsion = 20861.052766 eV Total energy + Delta-G solvation = -3139.147094 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.31502 -37.89009 -36.54044 -33.60654 -32.25665 -31.64758 -31.42575 -30.45254 -26.46026 -25.70421 -25.01230 -23.47274 -23.16802 -21.67732 -20.18310 -19.02962 -18.08611 -17.14053 -16.68181 -15.75309 -15.49827 -15.14465 -14.72817 -14.12662 -14.03982 -13.78842 -13.68522 -13.27436 -13.06557 -12.96970 -12.61730 -12.55595 -12.46039 -12.30918 -12.04993 -11.90438 -11.66215 -11.50505 -11.34457 -11.17017 -11.02759 -10.74579 -10.47267 -10.39330 -10.31873 -10.23397 -10.14799 -9.82636 -9.49790 -9.19591 -8.96352 -8.56686 -8.04146 -6.09850 -4.09695 3.01191 3.23165 3.35545 3.37712 3.43785 4.38208 4.57284 4.59113 4.73483 4.95917 5.04786 5.12217 5.19761 5.23431 5.27729 5.33141 5.35618 5.38099 5.45290 5.52272 5.58127 5.68635 5.76198 5.80550 5.82117 5.88760 5.92023 5.98737 6.01001 6.03489 6.06680 6.16569 6.19741 6.25059 6.31625 6.38314 6.45529 6.53555 6.70114 6.74701 6.88678 7.15040 7.47133 7.73033 7.90546 8.47059 8.61197 8.93558 9.51882 11.03240 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.031049 B = 0.004399 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.587135 B = 6363.128921 C = 6562.986577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.125 4.125 3 C -0.070 4.070 4 C -0.122 4.122 5 C -0.152 4.152 6 C -0.111 4.111 7 H 0.092 0.908 8 C -0.143 4.143 9 C 0.518 3.482 10 O -0.546 6.546 11 N -0.608 5.608 12 C 0.109 3.891 13 C -0.139 4.139 14 C -0.122 4.122 15 C 0.005 3.995 16 H 0.029 0.971 17 C -0.514 4.514 18 H 0.076 0.924 19 C 0.071 3.929 20 N -0.899 5.899 21 Si 0.888 3.112 22 H -0.279 1.279 23 H -0.298 1.298 24 H -0.266 1.266 25 C 0.127 3.873 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.049 0.951 46 H 0.264 0.736 47 H 0.085 0.915 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.120 4.859 -21.351 22.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.162 4.162 3 C -0.088 4.088 4 C -0.160 4.160 5 C -0.209 4.209 6 C -0.133 4.133 7 H 0.110 0.890 8 C -0.200 4.200 9 C 0.306 3.694 10 O -0.424 6.424 11 N -0.341 5.341 12 C -0.014 4.014 13 C -0.177 4.177 14 C -0.159 4.159 15 C -0.014 4.014 16 H 0.048 0.952 17 C -0.552 4.552 18 H 0.094 0.906 19 C -0.130 4.130 20 N -0.537 5.537 21 Si 0.719 3.281 22 H -0.206 1.206 23 H -0.225 1.225 24 H -0.191 1.191 25 C 0.006 3.994 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.067 0.933 46 H 0.074 0.926 47 H 0.103 0.897 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.525 4.567 -21.099 22.057 hybrid contribution -0.391 1.046 0.426 1.195 sum -4.916 5.613 -20.673 21.978 Atomic orbital electron populations 1.21893 0.96246 1.01553 1.01565 1.21605 0.95762 0.96353 1.02489 1.21052 1.01082 0.94374 0.92339 1.21669 1.00597 0.99647 0.94060 1.21799 1.00800 1.00737 0.97597 1.21494 1.01984 0.96462 0.93330 0.88979 1.21781 1.02176 0.93888 1.02196 1.20479 0.84414 0.79868 0.84644 1.90655 1.21358 1.47081 1.83300 1.48340 1.19340 1.50282 1.16116 1.21717 0.85925 0.95015 0.98746 1.22002 1.01160 0.98394 0.96145 1.21981 1.00797 0.98482 0.94662 1.19455 0.92553 0.95361 0.94045 0.95248 1.20920 1.48952 0.96845 0.88493 0.90631 1.24984 0.94531 0.97890 0.95632 1.69895 1.49871 1.36151 0.97787 0.86823 0.77830 0.86334 0.77106 1.20596 1.22520 1.19146 1.21743 1.01520 0.93906 0.82203 0.93004 0.92560 0.92716 0.91775 0.91398 0.90077 0.91778 0.91712 0.93070 0.92709 0.92574 0.91484 0.92245 0.91838 0.91629 0.90505 0.91779 0.92161 0.91958 0.93256 0.92610 0.89686 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.22 37.16 0.34 -1.21 16 2 C -0.12 -1.43 5.21 -26.73 -0.14 -1.57 16 3 C -0.07 -0.78 1.43 -90.62 -0.13 -0.91 16 4 C -0.12 -1.05 5.03 -26.73 -0.13 -1.19 16 5 C -0.15 -1.21 9.53 37.16 0.35 -0.86 16 6 C -0.11 -1.36 1.05 -91.77 -0.10 -1.45 16 7 H 0.09 0.97 4.32 -51.93 -0.22 0.75 16 8 C -0.14 -1.57 8.56 37.15 0.32 -1.25 16 9 C 0.52 8.73 5.75 -10.98 -0.06 8.66 16 10 O -0.55 -11.28 15.07 5.56 0.08 -11.19 16 11 N -0.61 -10.48 2.97 -172.77 -0.51 -11.00 16 12 C 0.11 1.52 6.15 -3.72 -0.02 1.49 16 13 C -0.14 -2.19 6.08 -26.61 -0.16 -2.35 16 14 C -0.12 -2.48 4.66 -26.69 -0.12 -2.61 16 15 C 0.01 0.13 1.84 -91.65 -0.17 -0.04 16 16 H 0.03 0.74 7.20 -51.93 -0.37 0.36 16 17 C -0.51 -14.32 9.15 -34.44 -0.31 -14.64 16 18 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 19 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 20 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 21 Si 0.89 21.89 24.39 -169.99 -4.15 17.74 16 22 H -0.28 -6.60 6.86 56.52 0.39 -6.21 16 23 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 24 H -0.27 -6.35 6.53 56.52 0.37 -5.98 16 25 C 0.13 2.65 5.66 -3.71 -0.02 2.63 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.59 6.10 -51.93 -0.32 0.27 16 28 H 0.05 0.46 6.66 -51.93 -0.35 0.12 16 29 H 0.06 0.66 6.49 -51.93 -0.34 0.32 16 30 H 0.07 0.98 6.92 -51.93 -0.36 0.62 16 31 H 0.08 1.07 7.85 -51.93 -0.41 0.66 16 32 H 0.06 0.51 6.42 -51.93 -0.33 0.18 16 33 H 0.06 0.52 6.30 -51.93 -0.33 0.20 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.44 6.73 -51.93 -0.35 0.09 16 37 H 0.07 0.57 6.61 -51.93 -0.34 0.22 16 38 H 0.06 0.68 8.09 -51.92 -0.42 0.26 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.08 0.85 5.48 -51.93 -0.28 0.56 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.05 1.09 3.25 -51.93 -0.17 0.92 16 46 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 47 H 0.08 1.94 7.00 -51.93 -0.36 1.58 16 48 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 346.67 15.07 5.22 5.22 Total: -1.00 -31.43 346.67 -7.40 -38.83 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -8.36 Total: 0.42 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -0.46 Total: -13.35 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.26 Total: -37.68 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.08 Total: -11.19 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.15 Total: 17.74 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.43 -7.40 -38.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906364.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.329 kcal (2) G-P(sol) polarization free energy of solvation -31.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds