Wall clock time and date at job start Tue Mar 31 2020 06:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47426 * 2 1 4 4 C 1.52995 * 109.46907 * 60.00244 * 3 2 1 5 5 C 1.52990 * 109.47410 * 54.80884 * 4 3 2 6 6 C 1.53003 * 109.47027 * 300.00239 * 3 2 1 7 7 C 1.53003 * 109.47067 * 307.00067 * 6 3 2 8 8 C 1.50699 * 109.47095 * 180.02562 * 3 2 1 9 9 O 1.21275 * 120.00330 * 7.25268 * 8 3 2 10 10 N 1.34778 * 119.99576 * 187.25285 * 8 3 2 11 11 C 1.46924 * 120.63459 * 354.70790 * 10 8 3 12 12 C 1.53193 * 108.77721 * 233.58350 * 11 10 8 13 13 C 1.53036 * 109.31326 * 305.36530 * 12 11 10 14 14 C 1.53359 * 109.60780 * 61.37289 * 13 12 11 15 15 H 1.08996 * 109.47369 * 58.54435 * 14 13 12 16 16 C 1.50701 * 109.68317 * 178.74780 * 14 13 12 17 17 H 1.07996 * 119.99802 * 119.74804 * 16 14 13 18 18 C 1.37881 * 119.99821 * 299.74960 * 16 14 13 19 19 N 1.31509 * 119.99635 * 180.02562 * 18 16 14 20 20 Si 1.86798 * 119.99925 * 0.02562 * 18 16 14 21 21 H 1.48499 * 109.47102 * 90.00226 * 20 18 16 22 22 H 1.48496 * 109.47093 * 209.99828 * 20 18 16 23 23 H 1.48499 * 109.47325 * 329.99733 * 20 18 16 24 24 C 1.46927 * 120.62623 * 174.68333 * 10 8 3 25 25 H 1.08994 * 109.47285 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46831 * 300.00035 * 1 2 3 27 27 H 1.08994 * 109.47024 * 59.99701 * 1 2 3 28 28 H 1.09000 * 109.46831 * 239.99965 * 2 1 3 29 29 H 1.08993 * 109.47544 * 120.00374 * 2 1 3 30 30 H 1.08998 * 109.47180 * 174.81264 * 4 3 2 31 31 H 1.09002 * 109.47321 * 294.80487 * 4 3 2 32 32 H 1.08997 * 109.47675 * 180.02562 * 5 4 3 33 33 H 1.09003 * 109.47253 * 299.99825 * 5 4 3 34 34 H 1.09006 * 109.47502 * 59.99938 * 5 4 3 35 35 H 1.09001 * 109.47007 * 67.00252 * 6 3 2 36 36 H 1.08998 * 109.46766 * 187.00187 * 6 3 2 37 37 H 1.09007 * 109.46700 * 179.97438 * 7 6 3 38 38 H 1.08992 * 109.47251 * 300.00154 * 7 6 3 39 39 H 1.08998 * 109.47229 * 60.00404 * 7 6 3 40 40 H 1.08999 * 109.58297 * 353.37732 * 11 10 8 41 41 H 1.09008 * 109.58585 * 113.79344 * 11 10 8 42 42 H 1.09007 * 109.49132 * 65.32041 * 12 11 10 43 43 H 1.08996 * 109.49971 * 185.37622 * 12 11 10 44 44 H 1.09003 * 109.46089 * 181.38291 * 13 12 11 45 45 H 1.08997 * 109.46030 * 301.34642 * 13 12 11 46 46 H 0.97000 * 120.00059 * 180.02562 * 19 18 16 47 47 H 1.08999 * 109.58727 * 246.20167 * 24 10 8 48 48 H 1.08996 * 109.58887 * 6.48436 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5302 2.1637 1.2492 5 6 1.9308 1.3710 2.4950 6 6 1.5301 2.1638 -1.2492 7 6 1.8914 1.3481 -2.4923 8 6 3.5471 1.4424 -0.0006 9 8 4.1534 0.4005 -0.1336 10 7 4.2210 2.6002 0.1466 11 6 3.5052 3.8825 0.1928 12 6 4.1065 4.8210 -0.8582 13 6 5.6156 4.9351 -0.6306 14 6 6.2655 3.5549 -0.7873 15 1 6.0565 3.1659 -1.7838 16 6 7.7555 3.6705 -0.5939 17 1 8.2413 3.1216 0.1992 18 6 8.4986 4.4772 -1.4295 19 7 9.7990 4.5777 -1.2610 20 14 7.6582 5.4272 -2.8009 21 1 7.2395 6.7594 -2.2957 22 1 8.6030 5.6018 -3.9331 23 1 6.4641 4.6757 -3.2640 24 6 5.6856 2.6041 0.2646 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.9674 3.1610 1.2970 31 1 0.4442 2.2450 1.2040 32 1 1.5671 1.8845 3.3850 33 1 1.4935 0.3737 2.4473 34 1 3.0169 1.2897 2.5403 35 1 0.4473 2.2736 -1.1887 36 1 1.9921 3.1488 -1.3141 37 1 1.5276 1.8618 -3.3823 38 1 2.9741 1.2383 -2.5528 39 1 1.4293 0.3631 -2.4275 40 1 2.4495 3.7195 -0.0240 41 1 3.6128 4.3257 1.1828 42 1 3.9179 4.4202 -1.8542 43 1 3.6493 5.8065 -0.7701 44 1 6.0422 5.6216 -1.3619 45 1 5.8038 5.3125 0.3745 46 1 10.3217 5.1455 -1.8486 47 1 5.9710 2.9430 1.2604 48 1 6.0683 1.5973 0.0977 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597908657.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:04 Heat of formation + Delta-G solvation = -40.790393 kcal Electronic energy + Delta-G solvation = -24703.723417 eV Core-core repulsion = 21565.546409 eV Total energy + Delta-G solvation = -3138.177008 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.88146 -37.60934 -36.55596 -33.55687 -32.37002 -31.76421 -31.08595 -30.21302 -27.30968 -25.36218 -24.95083 -23.98119 -22.16796 -21.61469 -20.93673 -19.14647 -18.27074 -16.80424 -16.13434 -15.98605 -15.87384 -15.17680 -14.69421 -14.25392 -13.90034 -13.61787 -13.34159 -13.17443 -13.04539 -12.89666 -12.66282 -12.55354 -12.52604 -12.22852 -12.14523 -11.68961 -11.65481 -11.52005 -11.29883 -11.12683 -10.90693 -10.68862 -10.63845 -10.37222 -10.30309 -10.18371 -10.06752 -9.80027 -9.46677 -9.16689 -8.91900 -8.56367 -8.02064 -6.09691 -4.09474 3.03307 3.23338 3.35718 3.37853 3.45736 4.38479 4.51318 4.54032 4.78533 4.97501 5.07773 5.11676 5.20020 5.24552 5.31160 5.34336 5.35398 5.41233 5.45960 5.59144 5.69001 5.71156 5.72835 5.84219 5.88336 5.90148 5.96120 5.99593 6.03655 6.07727 6.15495 6.17466 6.21079 6.24774 6.27381 6.39315 6.50714 6.54543 6.71308 6.75304 6.89675 7.15585 7.47614 7.73461 7.92651 8.47413 8.62491 8.93829 9.52173 11.03427 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026445 B = 0.005276 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.556358 B = 5305.880631 C = 5476.504497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.103 4.103 3 C -0.075 4.075 4 C -0.133 4.133 5 C -0.155 4.155 6 C -0.125 4.125 7 C -0.156 4.156 8 C 0.524 3.476 9 O -0.546 6.546 10 N -0.605 5.605 11 C 0.091 3.909 12 C -0.141 4.141 13 C -0.122 4.122 14 C 0.007 3.993 15 H 0.029 0.971 16 C -0.513 4.513 17 H 0.075 0.925 18 C 0.072 3.928 19 N -0.899 5.899 20 Si 0.888 3.112 21 H -0.279 1.279 22 H -0.298 1.298 23 H -0.266 1.266 24 C 0.127 3.873 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.099 0.901 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.049 0.951 45 H 0.061 0.939 46 H 0.264 0.736 47 H 0.060 0.940 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.280 -2.401 2.960 21.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.140 4.140 3 C -0.078 4.078 4 C -0.170 4.170 5 C -0.212 4.212 6 C -0.162 4.162 7 C -0.214 4.214 8 C 0.312 3.688 9 O -0.424 6.424 10 N -0.337 5.337 11 C -0.031 4.031 12 C -0.179 4.179 13 C -0.160 4.160 14 C -0.013 4.013 15 H 0.047 0.953 16 C -0.552 4.552 17 H 0.094 0.906 18 C -0.130 4.130 19 N -0.537 5.537 20 Si 0.718 3.282 21 H -0.206 1.206 22 H -0.225 1.225 23 H -0.191 1.191 24 C 0.006 3.994 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.116 0.884 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -20.766 -2.884 2.836 21.156 hybrid contribution -0.181 0.822 -0.780 1.147 sum -20.947 -2.062 2.056 21.148 Atomic orbital electron populations 1.21892 0.95869 1.01462 1.01879 1.21436 0.95037 0.94114 1.03461 1.20866 0.92353 0.98059 0.96553 1.22075 1.01413 1.00209 0.93326 1.21840 1.01965 1.00389 0.97008 1.21898 1.01320 0.99578 0.93408 1.21863 1.02412 1.00211 0.96878 1.20358 0.89232 0.83396 0.75803 1.90656 1.70171 1.31584 1.49997 1.48222 1.08496 1.05507 1.71479 1.22280 0.96902 0.84500 0.99438 1.22040 0.98564 0.98418 0.98888 1.22028 0.92102 1.00510 1.01315 1.19501 0.95985 0.90678 0.95120 0.95264 1.20916 0.89318 1.28098 1.16844 0.90645 1.24975 0.94645 0.96328 0.97030 1.69894 1.05568 1.39343 1.38906 0.86832 0.79124 0.80376 0.81833 1.20603 1.22523 1.19107 1.21737 0.76157 1.01939 0.99569 0.92891 0.92528 0.92477 0.90854 0.91251 0.89850 0.90963 0.92713 0.92208 0.92581 0.90882 0.90358 0.92750 0.92308 0.92076 0.88381 0.91666 0.92115 0.91805 0.93296 0.92006 0.92618 0.92161 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.14 37.16 0.34 -1.01 16 2 C -0.10 -1.21 3.29 -26.73 -0.09 -1.30 16 3 C -0.08 -0.92 0.09 -155.66 -0.01 -0.94 16 4 C -0.13 -1.36 4.10 -26.74 -0.11 -1.46 16 5 C -0.15 -1.66 9.23 37.15 0.34 -1.32 16 6 C -0.12 -1.37 4.08 -26.73 -0.11 -1.48 16 7 C -0.16 -1.88 9.19 37.16 0.34 -1.54 16 8 C 0.52 8.87 4.55 -10.99 -0.05 8.82 16 9 O -0.55 -11.35 15.40 5.56 0.09 -11.26 16 10 N -0.60 -10.40 2.96 -172.77 -0.51 -10.91 16 11 C 0.09 1.27 3.87 -3.71 -0.01 1.25 16 12 C -0.14 -2.22 5.93 -26.61 -0.16 -2.38 16 13 C -0.12 -2.49 4.68 -26.53 -0.12 -2.61 16 14 C 0.01 0.16 1.85 -91.49 -0.17 -0.01 16 15 H 0.03 0.73 7.20 -51.93 -0.37 0.36 16 16 C -0.51 -14.31 9.15 -34.44 -0.32 -14.62 16 17 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 18 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 19 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 20 Si 0.89 21.89 24.40 -169.99 -4.15 17.74 16 21 H -0.28 -6.61 6.86 56.52 0.39 -6.22 16 22 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 23 H -0.27 -6.35 6.53 56.52 0.37 -5.98 16 24 C 0.13 2.64 5.65 -3.71 -0.02 2.62 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.45 6.55 -51.93 -0.34 0.11 16 27 H 0.06 0.47 6.46 -51.93 -0.34 0.13 16 28 H 0.07 0.97 6.20 -51.93 -0.32 0.65 16 29 H 0.07 0.88 6.34 -51.93 -0.33 0.55 16 30 H 0.08 0.84 4.29 -51.93 -0.22 0.62 16 31 H 0.07 0.60 6.72 -51.93 -0.35 0.25 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.61 6.34 -51.93 -0.33 0.28 16 34 H 0.06 0.74 7.39 -51.93 -0.38 0.35 16 35 H 0.07 0.64 6.82 -51.93 -0.35 0.28 16 36 H 0.08 0.88 4.92 -51.93 -0.26 0.63 16 37 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 38 H 0.06 0.89 7.45 -51.93 -0.39 0.50 16 39 H 0.06 0.68 6.14 -51.93 -0.32 0.36 16 40 H 0.10 1.10 2.73 -51.93 -0.14 0.96 16 41 H 0.07 0.84 7.97 -51.92 -0.41 0.42 16 42 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.05 1.08 3.31 -51.93 -0.17 0.90 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 47 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 48 H 0.08 1.93 7.00 -51.93 -0.36 1.57 16 LS Contribution 334.49 15.07 5.04 5.04 Total: -1.00 -31.48 334.49 -6.95 -38.43 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -7.95 Total: 1.64 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -0.24 Total: -14.00 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.26 Total: -37.59 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.15 Total: 17.74 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.48 -6.95 -38.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908657.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.356 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds