Wall clock time and date at job start Tue Mar 31 2020 06:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47426 * 2 1 4 4 C 1.52995 * 109.46907 * 60.00244 * 3 2 1 5 5 C 1.52990 * 109.47410 * 54.80884 * 4 3 2 6 6 C 1.53003 * 109.47027 * 300.00239 * 3 2 1 7 7 C 1.53003 * 109.47067 * 307.00067 * 6 3 2 8 8 C 1.50699 * 109.47095 * 180.02562 * 3 2 1 9 9 O 1.21275 * 120.00330 * 7.25268 * 8 3 2 10 10 N 1.34778 * 119.99576 * 187.25285 * 8 3 2 11 11 C 1.46924 * 120.63459 * 354.70790 * 10 8 3 12 12 C 1.53193 * 108.77721 * 233.58350 * 11 10 8 13 13 C 1.53036 * 109.31326 * 305.36530 * 12 11 10 14 14 C 1.53359 * 109.60780 * 61.37289 * 13 12 11 15 15 H 1.08996 * 109.47369 * 58.54435 * 14 13 12 16 16 C 1.50701 * 109.68317 * 178.74780 * 14 13 12 17 17 H 1.07996 * 119.99802 * 119.74804 * 16 14 13 18 18 C 1.37881 * 119.99821 * 299.74960 * 16 14 13 19 19 N 1.31509 * 119.99635 * 180.02562 * 18 16 14 20 20 Si 1.86798 * 119.99925 * 0.02562 * 18 16 14 21 21 H 1.48499 * 109.47102 * 90.00226 * 20 18 16 22 22 H 1.48496 * 109.47093 * 209.99828 * 20 18 16 23 23 H 1.48499 * 109.47325 * 329.99733 * 20 18 16 24 24 C 1.46927 * 120.62623 * 174.68333 * 10 8 3 25 25 H 1.08994 * 109.47285 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46831 * 300.00035 * 1 2 3 27 27 H 1.08994 * 109.47024 * 59.99701 * 1 2 3 28 28 H 1.09000 * 109.46831 * 239.99965 * 2 1 3 29 29 H 1.08993 * 109.47544 * 120.00374 * 2 1 3 30 30 H 1.08998 * 109.47180 * 174.81264 * 4 3 2 31 31 H 1.09002 * 109.47321 * 294.80487 * 4 3 2 32 32 H 1.08997 * 109.47675 * 180.02562 * 5 4 3 33 33 H 1.09003 * 109.47253 * 299.99825 * 5 4 3 34 34 H 1.09006 * 109.47502 * 59.99938 * 5 4 3 35 35 H 1.09001 * 109.47007 * 67.00252 * 6 3 2 36 36 H 1.08998 * 109.46766 * 187.00187 * 6 3 2 37 37 H 1.09007 * 109.46700 * 179.97438 * 7 6 3 38 38 H 1.08992 * 109.47251 * 300.00154 * 7 6 3 39 39 H 1.08998 * 109.47229 * 60.00404 * 7 6 3 40 40 H 1.08999 * 109.58297 * 353.37732 * 11 10 8 41 41 H 1.09008 * 109.58585 * 113.79344 * 11 10 8 42 42 H 1.09007 * 109.49132 * 65.32041 * 12 11 10 43 43 H 1.08996 * 109.49971 * 185.37622 * 12 11 10 44 44 H 1.09003 * 109.46089 * 181.38291 * 13 12 11 45 45 H 1.08997 * 109.46030 * 301.34642 * 13 12 11 46 46 H 0.97000 * 120.00059 * 180.02562 * 19 18 16 47 47 H 1.08999 * 109.58727 * 246.20167 * 24 10 8 48 48 H 1.08996 * 109.58887 * 6.48436 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5302 2.1637 1.2492 5 6 1.9308 1.3710 2.4950 6 6 1.5301 2.1638 -1.2492 7 6 1.8914 1.3481 -2.4923 8 6 3.5471 1.4424 -0.0006 9 8 4.1534 0.4005 -0.1336 10 7 4.2210 2.6002 0.1466 11 6 3.5052 3.8825 0.1928 12 6 4.1065 4.8210 -0.8582 13 6 5.6156 4.9351 -0.6306 14 6 6.2655 3.5549 -0.7873 15 1 6.0565 3.1659 -1.7838 16 6 7.7555 3.6705 -0.5939 17 1 8.2413 3.1216 0.1992 18 6 8.4986 4.4772 -1.4295 19 7 9.7990 4.5777 -1.2610 20 14 7.6582 5.4272 -2.8009 21 1 7.2395 6.7594 -2.2957 22 1 8.6030 5.6018 -3.9331 23 1 6.4641 4.6757 -3.2640 24 6 5.6856 2.6041 0.2646 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.9674 3.1610 1.2970 31 1 0.4442 2.2450 1.2040 32 1 1.5671 1.8845 3.3850 33 1 1.4935 0.3737 2.4473 34 1 3.0169 1.2897 2.5403 35 1 0.4473 2.2736 -1.1887 36 1 1.9921 3.1488 -1.3141 37 1 1.5276 1.8618 -3.3823 38 1 2.9741 1.2383 -2.5528 39 1 1.4293 0.3631 -2.4275 40 1 2.4495 3.7195 -0.0240 41 1 3.6128 4.3257 1.1828 42 1 3.9179 4.4202 -1.8542 43 1 3.6493 5.8065 -0.7701 44 1 6.0422 5.6216 -1.3619 45 1 5.8038 5.3125 0.3745 46 1 10.3217 5.1455 -1.8486 47 1 5.9710 2.9430 1.2604 48 1 6.0683 1.5973 0.0977 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597908657.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:03 Heat of formation + Delta-G solvation = -60.996430 kcal Electronic energy + Delta-G solvation = -24704.599617 eV Core-core repulsion = 21565.546409 eV Total energy + Delta-G solvation = -3139.053208 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.08711 -38.98373 -37.87589 -35.37165 -33.60026 -33.16150 -32.42892 -31.37901 -28.42910 -26.97106 -26.48697 -24.92826 -23.29714 -22.86332 -22.37150 -20.59606 -19.49871 -18.86293 -17.45775 -17.19786 -16.87210 -16.63207 -16.16682 -15.65221 -15.31698 -14.97855 -14.86531 -14.54517 -14.17401 -14.03947 -13.99374 -13.77143 -13.67340 -13.46423 -13.19483 -12.96402 -12.82727 -12.64459 -12.47160 -12.34969 -12.16022 -12.08880 -11.93605 -11.84532 -11.53777 -11.52238 -11.35707 -11.22564 -11.13745 -10.87618 -10.70462 -10.33150 -9.50488 -8.34341 -6.39554 1.25129 1.33310 1.43542 1.72769 2.11846 2.28821 3.00508 3.46114 3.64454 3.87029 3.92786 3.99834 4.08907 4.21899 4.25803 4.31765 4.41961 4.47873 4.49492 4.52710 4.56962 4.62059 4.67521 4.73552 4.82192 4.87917 4.90655 4.98018 4.98658 5.05663 5.06939 5.11357 5.13499 5.16701 5.26745 5.31606 5.33808 5.35840 5.37895 5.41389 5.43839 5.63389 5.67712 5.74806 6.23347 6.59222 6.66653 7.24962 7.29001 8.82588 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026445 B = 0.005276 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.556358 B = 5305.880631 C = 5476.504497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.102 4.102 3 C -0.068 4.068 4 C -0.130 4.130 5 C -0.155 4.155 6 C -0.123 4.123 7 C -0.156 4.156 8 C 0.517 3.483 9 O -0.598 6.598 10 N -0.607 5.607 11 C 0.087 3.913 12 C -0.135 4.135 13 C -0.121 4.121 14 C 0.011 3.989 15 H 0.009 0.991 16 C -0.524 4.524 17 H 0.031 0.969 18 C 0.014 3.986 19 N -0.948 5.948 20 Si 0.955 3.045 21 H -0.254 1.254 22 H -0.301 1.301 23 H -0.254 1.254 24 C 0.138 3.862 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.020 0.980 35 H 0.114 0.886 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.015 0.985 39 H 0.066 0.934 40 H 0.137 0.863 41 H 0.085 0.915 42 H 0.056 0.944 43 H 0.107 0.893 44 H 0.037 0.963 45 H 0.064 0.936 46 H 0.267 0.733 47 H 0.059 0.941 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.423 -0.145 2.677 26.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.140 4.140 3 C -0.071 4.071 4 C -0.167 4.167 5 C -0.212 4.212 6 C -0.160 4.160 7 C -0.214 4.214 8 C 0.307 3.693 9 O -0.479 6.479 10 N -0.338 5.338 11 C -0.034 4.034 12 C -0.173 4.173 13 C -0.158 4.158 14 C -0.009 4.009 15 H 0.027 0.973 16 C -0.562 4.562 17 H 0.049 0.951 18 C -0.183 4.183 19 N -0.588 5.588 20 Si 0.782 3.218 21 H -0.179 1.179 22 H -0.229 1.229 23 H -0.179 1.179 24 C 0.015 3.985 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.109 0.891 31 H 0.128 0.872 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.039 0.961 35 H 0.132 0.868 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.034 0.966 39 H 0.084 0.916 40 H 0.154 0.846 41 H 0.103 0.897 42 H 0.075 0.925 43 H 0.125 0.875 44 H 0.055 0.945 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -25.951 -0.609 2.572 26.085 hybrid contribution 1.532 -0.031 -0.622 1.654 sum -24.419 -0.640 1.950 24.505 Atomic orbital electron populations 1.21856 0.92693 1.02427 1.03324 1.21413 0.97598 0.93437 1.01550 1.20939 0.88068 0.99167 0.98886 1.22142 1.03613 0.99705 0.91232 1.21841 0.99661 1.01166 0.98552 1.21974 1.03703 0.98821 0.91474 1.21861 0.99581 1.01283 0.98644 1.21425 0.91495 0.82304 0.74073 1.90627 1.71718 1.33506 1.52072 1.48275 1.06694 1.07455 1.71390 1.22662 0.98266 0.82294 1.00146 1.22041 0.94851 1.01228 0.99213 1.21900 0.95594 0.97215 1.01138 1.19362 0.93377 0.93578 0.94545 0.97286 1.21227 0.92217 1.27186 1.15587 0.95082 1.25873 0.95141 0.97493 0.99791 1.70050 1.07443 1.40811 1.40534 0.85750 0.78144 0.79870 0.78084 1.17947 1.22864 1.17865 1.21252 0.79286 0.99259 0.98675 0.92426 0.90803 0.91055 0.93202 0.93037 0.89137 0.87207 0.90641 0.92023 0.96124 0.86815 0.90094 0.90944 0.96609 0.91555 0.84613 0.89724 0.92482 0.87482 0.94464 0.91755 0.92423 0.92279 0.93334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.14 71.98 0.66 -1.31 16 2 C -0.10 -2.25 3.29 30.60 0.10 -2.15 16 3 C -0.07 -1.49 0.09 -52.93 0.00 -1.49 16 4 C -0.13 -2.07 4.10 30.59 0.13 -1.94 16 5 C -0.15 -2.95 9.23 71.98 0.66 -2.28 16 6 C -0.12 -2.17 4.08 30.60 0.12 -2.05 16 7 C -0.16 -3.45 9.19 71.98 0.66 -2.79 16 8 C 0.52 17.58 4.55 87.66 0.40 17.98 16 9 O -0.60 -26.44 15.40 -3.01 -0.05 -26.49 16 10 N -0.61 -20.64 2.96 -818.91 -2.42 -23.07 16 11 C 0.09 2.10 3.87 86.36 0.33 2.43 16 12 C -0.14 -3.72 5.93 30.67 0.18 -3.54 16 13 C -0.12 -4.73 4.68 30.73 0.14 -4.59 16 14 C 0.01 0.53 1.85 -11.35 -0.02 0.51 16 15 H 0.01 0.47 7.20 -2.39 -0.02 0.45 16 16 C -0.52 -30.85 9.15 25.60 0.23 -30.61 16 17 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 18 C 0.01 0.85 5.45 84.66 0.46 1.31 16 19 N -0.95 -60.41 13.96 21.45 0.30 -60.12 16 20 Si 0.95 45.56 24.40 68.60 1.67 47.23 16 21 H -0.25 -11.07 6.86 99.48 0.68 -10.39 16 22 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 23 H -0.25 -11.53 6.53 99.48 0.65 -10.88 16 24 C 0.14 6.06 5.65 86.36 0.49 6.55 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.07 0.77 6.55 -2.39 -0.02 0.75 16 27 H 0.07 0.78 6.46 -2.39 -0.02 0.77 16 28 H 0.05 1.32 6.20 -2.39 -0.01 1.31 16 29 H 0.05 1.30 6.34 -2.39 -0.02 1.29 16 30 H 0.09 1.34 4.29 -2.39 -0.01 1.33 16 31 H 0.11 1.04 6.72 -2.39 -0.02 1.02 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 1.14 6.34 -2.39 -0.02 1.12 16 34 H 0.02 0.52 7.39 -2.38 -0.02 0.50 16 35 H 0.11 1.20 6.82 -2.39 -0.02 1.18 16 36 H 0.08 1.41 4.92 -2.39 -0.01 1.40 16 37 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.01 0.46 7.45 -2.39 -0.02 0.44 16 39 H 0.07 1.37 6.14 -2.39 -0.01 1.35 16 40 H 0.14 2.30 2.73 -2.39 -0.01 2.29 16 41 H 0.08 1.79 7.97 -2.38 -0.02 1.77 16 42 H 0.06 1.64 8.07 -2.38 -0.02 1.62 16 43 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.04 1.54 3.31 -2.39 -0.01 1.54 16 45 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 46 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 47 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 48 H 0.05 2.43 7.00 -2.39 -0.02 2.41 16 Total: -1.00 -76.47 334.49 4.91 -71.56 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.86 Total: 14.87 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: 4.55 Total: -23.98 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -2.13 Total: -83.18 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.05 Total: -26.49 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.67 Total: 47.23 kcal Total: -76.47 4.91 -71.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908657.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.562 kcal (2) G-P(sol) polarization free energy of solvation -76.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds