Wall clock time and date at job start Tue Mar 31 2020 06:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47484 * 2 1 4 4 C 1.53002 * 109.46935 * 239.99862 * 2 1 3 5 5 C 1.52998 * 109.47281 * 120.00230 * 2 1 3 6 6 C 1.53002 * 109.47050 * 59.99504 * 5 2 1 7 7 C 1.52997 * 109.47372 * 180.02562 * 6 5 2 8 8 C 1.50693 * 109.47552 * 180.02562 * 7 6 5 9 9 O 1.21289 * 119.99967 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00575 * 179.97438 * 8 7 6 11 11 C 1.46931 * 120.62462 * 0.02562 * 10 8 7 12 12 C 1.53187 * 108.77274 * 233.62733 * 11 10 8 13 13 C 1.53049 * 109.31497 * 305.36469 * 12 11 10 14 14 C 1.53039 * 109.53353 * 61.36666 * 13 12 11 15 15 H 1.09002 * 109.49751 * 58.58726 * 14 13 12 16 16 C 1.50704 * 109.49530 * 178.65349 * 14 13 12 17 17 H 1.08000 * 120.00137 * 119.93517 * 16 14 13 18 18 C 1.37880 * 119.99774 * 299.93494 * 16 14 13 19 19 N 1.31516 * 120.00128 * 359.97438 * 18 16 14 20 20 Si 1.86792 * 119.99950 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47185 * 60.00117 * 20 18 16 22 22 H 1.48502 * 109.47194 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47244 * 299.99909 * 20 18 16 24 24 C 1.46925 * 120.63519 * 180.02562 * 10 8 7 25 25 H 1.08997 * 109.46535 * 300.00350 * 1 2 3 26 26 H 1.09003 * 109.46813 * 59.99955 * 1 2 3 27 27 H 1.08996 * 109.47320 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46773 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47132 * 299.99850 * 3 2 1 30 30 H 1.08998 * 109.46625 * 60.00078 * 3 2 1 31 31 H 1.09001 * 109.47397 * 300.00698 * 4 2 1 32 32 H 1.09003 * 109.47220 * 60.00432 * 4 2 1 33 33 H 1.09003 * 109.47155 * 179.97438 * 4 2 1 34 34 H 1.08998 * 109.47167 * 300.00129 * 5 2 1 35 35 H 1.08992 * 109.47627 * 179.97438 * 5 2 1 36 36 H 1.09006 * 109.47227 * 60.00147 * 6 5 2 37 37 H 1.08997 * 109.47399 * 300.00588 * 6 5 2 38 38 H 1.08993 * 109.47505 * 59.99577 * 7 6 5 39 39 H 1.09005 * 109.46900 * 299.99780 * 7 6 5 40 40 H 1.09002 * 109.58421 * 113.84017 * 11 10 8 41 41 H 1.08993 * 109.70684 * 353.48793 * 11 10 8 42 42 H 1.09006 * 109.49516 * 185.41853 * 12 11 10 43 43 H 1.08993 * 109.49868 * 65.31880 * 12 11 10 44 44 H 1.08998 * 109.45961 * 301.34644 * 13 12 11 45 45 H 1.08993 * 109.45850 * 181.38486 * 13 12 11 46 46 H 0.96999 * 119.99883 * 179.97438 * 19 18 16 47 47 H 1.09005 * 109.58300 * 6.58314 * 24 10 8 48 48 H 1.08998 * 109.58651 * 246.16254 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.5299 -2.1638 1.2492 7 6 2.0394 -2.8849 2.4987 8 6 1.5375 -4.3058 2.4984 9 8 0.8405 -4.7026 1.5886 10 7 1.8632 -5.1359 3.5091 11 6 2.7062 -4.6696 4.6185 12 6 3.8924 -5.6267 4.7722 13 6 3.3714 -7.0563 4.9365 14 6 2.5834 -7.4604 3.6883 15 1 3.2269 -7.3855 2.8118 16 6 2.0988 -8.8796 3.8370 17 1 1.0406 -9.0941 3.8141 18 6 3.0066 -9.9042 4.0023 19 7 4.2953 -9.6430 4.0296 20 14 2.4061 -11.6634 4.1859 21 1 1.6407 -12.0541 2.9748 22 1 3.5712 -12.5698 4.3482 23 1 1.5291 -11.7651 5.3799 24 6 1.3820 -6.5240 3.5225 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9564 -0.8900 30 1 1.6768 1.9562 0.8900 31 1 1.6765 -1.7489 -1.2493 32 1 1.6767 -0.2074 -2.1393 33 1 3.1300 -0.7209 -1.2495 34 1 1.6767 -0.2075 2.1392 35 1 3.1300 -0.7217 1.2490 36 1 1.8932 -2.6777 0.3591 37 1 0.4400 -2.1638 1.2491 38 1 1.6759 -2.3710 3.3884 39 1 3.1295 -2.8850 2.4990 40 1 2.1241 -4.6582 5.5399 41 1 3.0722 -3.6654 4.4051 42 1 4.4732 -5.3479 5.6515 43 1 4.5236 -5.5691 3.8855 44 1 2.7205 -7.1075 5.8093 45 1 4.2127 -7.7362 5.0707 46 1 4.9338 -10.3638 4.1463 47 1 0.8741 -6.7437 2.5833 48 1 0.6920 -6.6635 4.3547 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597914325.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:10 Heat of formation + Delta-G solvation = -79.857476 kcal Electronic energy + Delta-G solvation = -22800.232472 eV Core-core repulsion = 19660.361387 eV Total energy + Delta-G solvation = -3139.871084 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.67721 -38.19035 -36.71822 -33.55727 -32.93195 -31.29905 -30.22199 -27.59139 -27.39847 -27.27294 -25.06132 -24.35837 -22.08738 -21.59708 -19.66909 -18.80787 -18.12856 -16.73964 -16.11006 -15.71573 -15.41351 -14.75477 -14.59006 -14.43862 -14.18142 -13.84798 -13.49303 -13.24097 -12.83125 -12.70678 -12.59037 -12.40341 -12.02177 -11.98783 -11.83455 -11.77072 -11.64128 -11.62721 -10.96776 -10.92467 -10.83575 -10.77288 -10.57493 -10.51898 -10.40055 -10.27065 -9.95080 -9.79060 -9.45420 -9.20336 -8.81910 -8.38004 -7.85900 -6.01671 -4.08784 3.12360 3.31548 3.35833 3.38718 3.60190 4.42643 4.55534 4.66865 4.67132 4.94421 5.10061 5.14074 5.27027 5.35556 5.39557 5.44153 5.46039 5.60931 5.62969 5.64399 5.66038 5.69542 5.76380 5.77019 5.81490 5.86293 5.95766 6.08529 6.11430 6.17387 6.20201 6.34035 6.37371 6.42268 6.46605 6.49833 6.67780 6.82667 7.00348 7.18171 7.34371 7.69169 7.92986 8.06182 8.08271 8.38305 8.71537 8.94883 9.55984 11.03847 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.033032 B = 0.003142 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.453273 B = 8910.543874 C = 9226.812127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.070 4.070 3 C -0.141 4.141 4 C -0.146 4.146 5 C -0.109 4.109 6 C -0.107 4.107 7 C -0.139 4.139 8 C 0.506 3.494 9 O -0.554 6.554 10 N -0.605 5.605 11 C 0.110 3.890 12 C -0.135 4.135 13 C -0.113 4.113 14 C 0.041 3.959 15 H 0.029 0.971 16 C -0.515 4.515 17 H 0.056 0.944 18 C 0.063 3.937 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.117 3.883 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.035 0.965 45 H 0.095 0.905 46 H 0.261 0.739 47 H 0.078 0.922 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.905 19.731 -2.550 19.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.070 4.070 3 C -0.198 4.198 4 C -0.203 4.203 5 C -0.146 4.146 6 C -0.144 4.144 7 C -0.179 4.179 8 C 0.294 3.706 9 O -0.433 6.433 10 N -0.337 5.337 11 C -0.014 4.014 12 C -0.173 4.173 13 C -0.151 4.151 14 C 0.021 3.979 15 H 0.047 0.953 16 C -0.553 4.553 17 H 0.074 0.926 18 C -0.138 4.138 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.005 4.005 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.054 0.946 45 H 0.113 0.887 46 H 0.071 0.929 47 H 0.096 0.904 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.100 19.419 -3.004 19.762 hybrid contribution -0.104 -1.008 0.311 1.060 sum -2.204 18.411 -2.693 18.737 Atomic orbital electron populations 1.21944 0.94681 1.02327 1.01264 1.20534 0.95738 0.95104 0.95620 1.21873 1.00853 0.95603 1.01455 1.21952 1.00872 1.00884 0.96585 1.21667 1.00484 0.95405 0.97079 1.21473 1.01635 0.94083 0.97259 1.21699 1.02298 0.93386 1.00541 1.20617 0.80600 0.87618 0.81731 1.90650 1.39209 1.77549 1.35849 1.48333 1.50084 1.13175 1.22155 1.21725 0.92624 0.97571 0.89455 1.22005 0.96319 0.98181 1.00837 1.21630 1.02008 0.92652 0.98769 1.18965 0.91546 0.92626 0.94716 0.95330 1.21053 0.93096 0.91140 1.50031 0.92552 1.24937 0.94856 0.98992 0.95036 1.69863 1.00679 1.32248 1.50046 0.86636 0.78158 0.84372 0.78713 1.20223 1.21309 1.20258 1.21977 0.98553 0.78399 1.01522 0.92868 0.93059 0.91887 0.92782 0.92896 0.92832 0.91842 0.93060 0.92783 0.92083 0.91992 0.90935 0.91068 0.89568 0.89350 0.92064 0.91085 0.92510 0.92408 0.94614 0.88661 0.92927 0.90383 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.12 37.16 0.30 -0.99 16 2 C -0.07 -0.62 0.80 -154.51 -0.12 -0.74 16 3 C -0.14 -1.07 8.47 37.16 0.31 -0.76 16 4 C -0.15 -1.35 8.12 37.16 0.30 -1.05 16 5 C -0.11 -1.02 4.27 -26.73 -0.11 -1.13 16 6 C -0.11 -1.28 3.80 -26.73 -0.10 -1.38 16 7 C -0.14 -1.77 4.05 -27.89 -0.11 -1.89 16 8 C 0.51 9.13 7.70 -10.99 -0.08 9.05 16 9 O -0.55 -12.00 15.40 5.55 0.09 -11.91 16 10 N -0.61 -11.28 2.97 -172.75 -0.51 -11.80 16 11 C 0.11 1.68 6.34 -3.71 -0.02 1.66 16 12 C -0.14 -2.39 6.08 -26.61 -0.16 -2.55 16 13 C -0.11 -2.53 4.96 -26.69 -0.13 -2.66 16 14 C 0.04 1.01 2.25 -91.64 -0.21 0.80 16 15 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 16 C -0.51 -14.05 8.56 -34.44 -0.29 -14.35 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 19 N -0.89 -25.08 11.32 55.43 0.63 -24.46 16 20 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C 0.12 2.56 5.66 -3.70 -0.02 2.54 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.63 6.43 -51.93 -0.33 0.30 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.98 6.39 -51.93 -0.33 0.65 16 37 H 0.07 0.92 6.39 -51.93 -0.33 0.59 16 38 H 0.09 0.92 7.94 -51.93 -0.41 0.51 16 39 H 0.09 1.02 7.70 -51.93 -0.40 0.62 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.86 5.94 -51.93 -0.31 0.55 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.10 2.43 6.04 -51.93 -0.31 2.11 16 46 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 47 H 0.08 1.85 7.01 -51.93 -0.36 1.49 16 48 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 363.47 15.07 5.48 5.48 Total: -1.00 -29.80 363.47 -8.91 -38.71 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -9.01 Total: -0.40 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -0.55 Total: -11.82 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.11 Total: -36.25 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.91 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.80 -8.91 -38.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597914325.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.151 kcal (2) G-P(sol) polarization free energy of solvation -29.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds