Wall clock time and date at job start Tue Mar 31 2020 05:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53140 * 1 3 3 C 1.55682 * 104.73759 * 2 1 4 4 C 1.46021 * 109.21592 * 248.24174 * 2 1 3 5 5 C 1.54096 * 113.75104 * 283.45890 * 4 2 1 6 6 N 1.44149 * 109.59860 * 281.54200 * 5 4 2 7 7 C 1.35663 * 117.48259 * 258.38368 * 6 5 4 8 8 O 1.21279 * 120.00421 * 179.97438 * 7 6 5 9 9 C 1.50707 * 119.99599 * 0.02562 * 7 6 5 10 10 C 1.53002 * 109.47146 * 179.97438 * 9 7 6 11 11 C 1.50693 * 109.47151 * 179.97438 * 10 9 7 12 12 H 1.08003 * 119.99939 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00033 * 180.02562 * 11 10 9 14 14 N 1.31522 * 119.99903 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00158 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47111 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47582 * 119.99644 * 15 13 11 18 18 H 1.48503 * 109.47159 * 239.99690 * 15 13 11 19 19 C 1.46572 * 124.81214 * 78.48047 * 6 5 4 20 20 C 1.53327 * 115.98636 * 343.64845 * 19 6 5 21 21 C 1.55902 * 105.43657 * 191.12193 * 20 19 6 22 22 C 1.52600 * 110.20962 * 77.67314 * 20 19 6 23 23 C 1.48478 * 114.15858 * 307.44468 * 20 19 6 24 24 H 1.08999 * 109.47332 * 299.70117 * 1 2 3 25 25 H 1.09004 * 109.47064 * 59.70534 * 1 2 3 26 26 H 1.09003 * 109.47145 * 179.69808 * 1 2 3 27 27 H 1.08995 * 109.46594 * 178.33073 * 3 2 1 28 28 H 1.08994 * 109.46929 * 298.33316 * 3 2 1 29 29 H 1.09000 * 109.46814 * 58.32859 * 3 2 1 30 30 H 1.10274 * 108.85754 * 45.10317 * 4 2 1 31 31 H 1.09884 * 108.93800 * 161.14773 * 4 2 1 32 32 H 1.08056 * 111.52137 * 46.12260 * 5 4 2 33 33 H 1.10291 * 108.09636 * 164.20493 * 5 4 2 34 34 H 1.09003 * 109.46531 * 299.99374 * 9 7 6 35 35 H 1.08996 * 109.47111 * 59.99600 * 9 7 6 36 36 H 1.08998 * 109.46569 * 300.00010 * 10 9 7 37 37 H 1.09001 * 109.46889 * 59.99299 * 10 9 7 38 38 H 0.97001 * 119.99676 * 180.02562 * 14 13 11 39 39 H 1.09811 * 108.20501 * 105.39498 * 19 6 5 40 40 H 1.09676 * 108.93327 * 220.94093 * 19 6 5 41 41 H 1.09004 * 109.46864 * 181.55298 * 21 20 19 42 42 H 1.09001 * 109.46900 * 301.54828 * 21 20 19 43 43 H 1.08998 * 109.47269 * 61.55480 * 21 20 19 44 44 H 1.08999 * 109.46893 * 296.51308 * 22 20 19 45 45 H 1.08996 * 109.46849 * 56.51242 * 22 20 19 46 46 H 1.08997 * 109.46907 * 176.51116 * 22 20 19 47 47 H 1.11492 * 107.63913 * 309.29478 * 23 20 19 48 48 H 1.11366 * 107.71844 * 198.43564 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5314 0.0000 0.0000 3 6 1.9274 1.5056 0.0000 4 6 2.0120 -0.5111 -1.2806 5 6 1.9063 -2.0424 -1.4168 6 7 2.9891 -2.6675 -0.6994 7 6 4.0437 -3.1169 -1.4248 8 8 4.9800 -3.6498 -0.8678 9 6 4.0524 -2.9528 -2.9229 10 6 5.3456 -3.5391 -3.4928 11 6 5.3540 -3.3756 -4.9908 12 1 4.5201 -2.9013 -5.4869 13 6 6.4257 -3.8323 -5.7281 14 7 7.4410 -4.4103 -5.1240 15 14 6.4358 -3.6303 -7.5851 16 1 5.1859 -2.9543 -8.0163 17 1 7.6066 -2.8103 -7.9876 18 1 6.5226 -4.9662 -8.2279 19 6 3.0324 -2.8544 0.7537 20 6 2.0427 -2.0137 1.5690 21 6 2.4845 -2.1779 3.0550 22 6 0.6447 -2.6201 1.4885 23 6 2.0958 -0.5590 1.2762 24 1 -0.3634 0.5092 0.8926 25 1 -0.3633 0.5184 -0.8874 26 1 -0.3633 -1.0277 -0.0054 27 1 3.0133 1.5956 0.0299 28 1 1.5482 1.9810 -0.9045 29 1 1.4980 1.9942 0.8746 30 1 1.4338 -0.0392 -2.0924 31 1 3.0582 -0.2040 -1.4172 32 1 0.9421 -2.4039 -1.0893 33 1 2.0139 -2.2997 -2.4839 34 1 3.1967 -3.4755 -3.3505 35 1 3.9930 -1.8935 -3.1727 36 1 6.2009 -3.0161 -3.0650 37 1 5.4054 -4.5984 -3.2428 38 1 8.1952 -4.7313 -5.6428 39 1 2.8413 -3.9140 0.9692 40 1 4.0473 -2.6398 1.1100 41 1 1.8024 -1.6241 3.7002 42 1 2.4638 -3.2336 3.3257 43 1 3.4960 -1.7909 3.1783 44 1 0.2940 -2.5889 0.4569 45 1 0.6772 -3.6546 1.8301 46 1 -0.0356 -2.0498 2.1210 47 1 3.1615 -0.2391 1.3454 48 1 1.6111 -0.0247 2.1245 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598188952.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:56 Heat of formation + Delta-G solvation = -61.377550 kcal Electronic energy + Delta-G solvation = -23802.656767 eV Core-core repulsion = 20663.587033 eV Total energy + Delta-G solvation = -3139.069734 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.53120 -38.47341 -35.91026 -34.70877 -33.43233 -30.95645 -29.32036 -28.11306 -26.95275 -26.75935 -26.60530 -24.99120 -23.31836 -21.54044 -19.83525 -18.50072 -18.17125 -16.87717 -16.23195 -15.81595 -15.28379 -15.21113 -14.65563 -14.40647 -14.00332 -13.71138 -13.66678 -13.38947 -12.88580 -12.70065 -12.46723 -12.32566 -12.25978 -12.15096 -12.09846 -11.85221 -11.59502 -11.52060 -11.34789 -11.09374 -10.93564 -10.89412 -10.66526 -10.60213 -10.43969 -10.32874 -10.18854 -9.90892 -9.53232 -9.11097 -8.90085 -8.31214 -8.19752 -5.93590 -3.97734 3.27360 3.34039 3.39343 3.42231 3.45322 4.38256 4.40684 4.49427 4.52359 4.77414 4.85546 4.92588 5.12768 5.25306 5.32809 5.36636 5.41447 5.44893 5.47946 5.50459 5.55595 5.58091 5.63750 5.68555 5.72138 5.72932 5.82762 5.84335 5.91242 5.97075 6.00339 6.10124 6.13031 6.21446 6.24587 6.27980 6.30132 6.33436 6.42040 6.93296 7.04697 7.77572 7.83299 7.90076 8.10450 8.41865 8.82274 9.11209 9.65710 11.17454 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024168 B = 0.004061 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.299547 B = 6893.242128 C = 7542.798198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.048 4.048 3 C -0.153 4.153 4 C -0.126 4.126 5 C 0.107 3.893 6 N -0.614 5.614 7 C 0.504 3.496 8 O -0.533 6.533 9 C -0.127 4.127 10 C 0.036 3.964 11 C -0.525 4.525 12 H 0.056 0.944 13 C 0.058 3.942 14 N -0.890 5.890 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.131 3.869 20 C -0.057 4.057 21 C -0.148 4.148 22 C -0.144 4.144 23 C -0.084 4.084 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.260 0.740 39 H 0.051 0.949 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.056 0.944 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.953 9.414 14.089 23.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.048 4.048 3 C -0.210 4.210 4 C -0.165 4.165 5 C -0.017 4.017 6 N -0.349 5.349 7 C 0.294 3.706 8 O -0.408 6.408 9 C -0.167 4.167 10 C -0.001 4.001 11 C -0.563 4.563 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.529 5.529 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C 0.008 3.992 20 C -0.057 4.057 21 C -0.206 4.206 22 C -0.201 4.201 23 C -0.122 4.122 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.265 9.073 14.399 23.542 hybrid contribution 0.080 0.238 -0.935 0.968 sum -16.185 9.310 13.464 23.020 Atomic orbital electron populations 1.22211 0.94797 1.02078 1.01357 1.18955 0.95675 0.95485 0.94664 1.22794 1.01265 0.95588 1.01369 1.21221 1.02661 0.96134 0.96454 1.21382 0.90577 0.91884 0.97889 1.47595 1.20346 1.60976 1.05971 1.21910 0.80790 0.76793 0.91065 1.90646 1.34927 1.42097 1.73107 1.21885 1.03817 1.02569 0.88456 1.18913 0.89887 0.96788 0.94530 1.21256 1.04087 1.38873 0.92093 0.92580 1.25023 0.95627 0.95281 0.98447 1.70016 1.07869 1.39617 1.35359 0.86552 0.77925 0.77757 0.85827 1.19743 1.21045 1.21040 1.21478 0.99315 0.98338 0.80034 1.20152 0.95582 0.94774 0.95204 1.22641 1.01332 1.01971 0.94637 1.22027 0.95516 1.00326 1.02219 1.20505 1.01727 0.93760 0.96178 0.93111 0.92725 0.92138 0.92863 0.92681 0.93152 0.91026 0.91515 0.90780 0.89556 0.90284 0.90277 0.95893 0.95891 0.93046 0.93085 0.91362 0.92438 0.92349 0.92537 0.91823 0.92597 0.92590 0.92578 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 7.64 37.23 0.28 -0.87 16 2 C -0.05 -0.44 0.58 -157.65 -0.09 -0.53 16 3 C -0.15 -1.36 7.62 38.59 0.29 -1.06 16 4 C -0.13 -1.36 4.02 -29.47 -0.12 -1.47 16 5 C 0.11 1.28 5.24 -4.72 -0.02 1.26 16 6 N -0.61 -9.34 2.85 -173.49 -0.49 -9.83 16 7 C 0.50 10.14 7.61 -10.58 -0.08 10.06 16 8 O -0.53 -12.98 15.54 5.56 0.09 -12.90 16 9 C -0.13 -2.65 3.91 -27.88 -0.11 -2.76 16 10 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 11 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 12 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -27.67 13.29 55.43 0.74 -26.93 16 15 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 16 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 C 0.13 1.80 4.32 -3.83 -0.02 1.78 16 20 C -0.06 -0.57 0.52 -155.20 -0.08 -0.65 16 21 C -0.15 -1.31 7.79 38.71 0.30 -1.01 16 22 C -0.14 -1.25 7.00 36.95 0.26 -0.99 16 23 C -0.08 -0.82 2.58 -30.27 -0.08 -0.89 16 24 H 0.05 0.37 8.12 -51.93 -0.42 -0.05 16 25 H 0.05 0.41 7.88 -51.93 -0.41 0.00 16 26 H 0.06 0.47 4.89 -51.93 -0.25 0.21 16 27 H 0.05 0.52 7.92 -51.93 -0.41 0.11 16 28 H 0.05 0.46 8.04 -51.93 -0.42 0.05 16 29 H 0.05 0.40 8.11 -51.93 -0.42 -0.02 16 30 H 0.07 0.68 7.84 -51.20 -0.40 0.27 16 31 H 0.07 0.85 7.94 -51.43 -0.41 0.44 16 32 H 0.07 0.77 5.00 -52.46 -0.26 0.50 16 33 H 0.09 1.07 5.49 -51.19 -0.28 0.79 16 34 H 0.08 1.50 7.33 -51.93 -0.38 1.12 16 35 H 0.08 1.51 7.96 -51.93 -0.41 1.10 16 36 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 37 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.05 0.73 8.04 -51.47 -0.41 0.31 16 40 H 0.07 1.07 7.38 -51.55 -0.38 0.69 16 41 H 0.06 0.43 7.97 -51.93 -0.41 0.02 16 42 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 43 H 0.06 0.52 8.05 -51.93 -0.42 0.11 16 44 H 0.06 0.57 3.78 -51.93 -0.20 0.37 16 45 H 0.05 0.49 8.05 -51.93 -0.42 0.07 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.62 7.97 -50.49 -0.40 0.22 16 48 H 0.06 0.49 7.86 -50.56 -0.40 0.09 16 LS Contribution 354.32 15.07 5.34 5.34 Total: -1.00 -33.10 354.32 -8.09 -41.20 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -8.75 Total: -3.64 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 0.01 Total: -9.98 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.24 Total: -36.77 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.09 Total: -12.90 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.10 -8.09 -41.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598188952.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.182 kcal (2) G-P(sol) polarization free energy of solvation -33.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds