Wall clock time and date at job start Tue Mar 31 2020 06:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.46903 * 2 1 4 4 C 1.53000 * 109.46786 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47240 * 175.98335 * 4 3 2 6 6 H 1.08998 * 109.47123 * 53.21018 * 5 4 3 7 7 C 1.50704 * 109.47409 * 173.21276 * 5 4 3 8 8 O 1.21275 * 119.99888 * 6.70387 * 7 5 4 9 9 N 1.34773 * 120.00053 * 186.70047 * 7 5 4 10 10 C 1.46500 * 120.00228 * 183.77172 * 9 7 5 11 11 C 1.52997 * 109.47530 * 185.27310 * 10 9 7 12 12 C 1.50700 * 115.55049 * 185.35245 * 11 10 9 13 13 H 1.07993 * 119.99965 * 144.31997 * 12 11 10 14 14 C 1.37878 * 119.99993 * 324.31250 * 12 11 10 15 15 N 1.31506 * 119.99782 * 170.85038 * 14 12 11 16 16 Si 1.86806 * 119.99949 * 350.85923 * 14 12 11 17 17 H 1.48501 * 109.47054 * 91.38331 * 16 14 12 18 18 H 1.48498 * 109.46908 * 211.37808 * 16 14 12 19 19 H 1.48502 * 109.47103 * 331.37755 * 16 14 12 20 20 C 1.53000 * 117.49714 * 39.68335 * 11 10 9 21 21 C 1.53000 * 117.49634 * 331.02493 * 11 10 9 22 22 C 1.53009 * 109.47190 * 293.21313 * 5 4 3 23 23 C 1.53000 * 109.46894 * 174.23510 * 22 5 4 24 24 C 1.52998 * 109.46956 * 294.23459 * 22 5 4 25 25 H 1.08997 * 109.46813 * 299.99821 * 1 2 3 26 26 H 1.08999 * 109.46715 * 59.99908 * 1 2 3 27 27 H 1.08993 * 109.47021 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46813 * 240.00178 * 2 1 3 29 29 H 1.08999 * 109.46715 * 120.00092 * 2 1 3 30 30 H 1.08997 * 109.47240 * 60.00440 * 3 2 1 31 31 H 1.08998 * 109.47183 * 300.00041 * 3 2 1 32 32 H 1.09007 * 109.47183 * 55.98346 * 4 3 2 33 33 H 1.09000 * 109.47723 * 295.98636 * 4 3 2 34 34 H 0.97007 * 120.00219 * 3.77279 * 9 7 5 35 35 H 1.08998 * 109.46998 * 305.27673 * 10 9 7 36 36 H 1.09001 * 109.46982 * 65.27429 * 10 9 7 37 37 H 0.97008 * 119.99907 * 180.02562 * 15 14 12 38 38 H 1.09005 * 117.50159 * 359.97438 * 20 11 10 39 39 H 1.08999 * 117.50182 * 145.02143 * 20 11 10 40 40 H 1.09008 * 117.49637 * 214.97544 * 21 11 10 41 41 H 1.08995 * 117.50324 * 359.97438 * 21 11 10 42 42 H 1.08996 * 109.46825 * 54.23521 * 22 5 4 43 43 H 1.09004 * 109.47013 * 65.28223 * 23 22 5 44 44 H 1.08999 * 109.46739 * 185.27910 * 23 22 5 45 45 H 1.08997 * 109.47487 * 305.27790 * 23 22 5 46 46 H 1.09003 * 109.46785 * 64.91548 * 24 22 5 47 47 H 1.09000 * 109.46790 * 184.91109 * 24 22 5 48 48 H 1.08997 * 109.47234 * 304.91463 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8813 -0.1004 6 1 3.6207 3.4855 0.6819 7 6 5.5777 2.8965 0.0675 8 8 6.1916 1.8523 0.1281 9 7 6.2347 4.0703 0.1502 10 6 7.6974 4.0870 0.2303 11 6 8.1801 5.5226 0.4469 12 6 9.6744 5.7164 0.4240 13 1 10.0957 6.6170 0.0025 14 6 10.5036 4.7439 0.9414 15 7 11.8039 4.8253 0.7623 16 14 9.7801 3.3107 1.8963 17 1 9.5020 2.1866 0.9667 18 1 10.7470 2.8681 2.9328 19 1 8.5163 3.7381 2.5485 20 6 7.3677 6.4053 1.3965 21 6 7.3126 6.6516 -0.1133 22 6 3.7147 3.4571 -1.4701 23 6 4.0960 4.9380 -1.5191 24 6 4.4734 2.6987 -2.5610 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.8674 -0.8510 33 1 3.9331 0.9923 0.9246 34 1 5.7391 4.9042 0.1568 35 1 8.0228 3.4646 1.0638 36 1 8.1165 3.6990 -0.6982 37 1 12.3874 4.1409 1.1260 38 1 6.4891 5.9633 1.8667 39 1 7.9139 7.1264 2.0045 40 1 7.8227 7.5348 -0.4979 41 1 6.3983 6.3716 -0.6364 42 1 2.6421 3.3524 -1.6337 43 1 5.1793 5.0367 -1.4493 44 1 3.7515 5.3709 -2.4582 45 1 3.6290 5.4612 -0.6848 46 1 4.1374 1.6619 -2.5835 47 1 4.2811 3.1639 -3.5277 48 1 5.5421 2.7297 -2.3489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598697851.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:58 Heat of formation + Delta-G solvation = -30.140285 kcal Electronic energy + Delta-G solvation = -23561.275684 eV Core-core repulsion = 20423.560499 eV Total energy + Delta-G solvation = -3137.715185 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.26091 -37.66167 -36.55786 -34.96929 -33.20471 -32.22501 -30.98583 -28.14668 -27.14936 -26.79794 -24.83956 -22.71170 -21.76593 -21.55260 -20.64463 -19.48301 -19.04352 -17.00158 -16.35644 -16.03935 -15.75645 -15.47702 -14.60395 -14.42907 -14.12191 -14.02930 -13.72204 -13.54148 -13.03536 -12.98814 -12.84011 -12.66290 -12.54668 -12.11183 -11.92575 -11.72219 -11.56319 -11.32262 -11.11488 -11.03264 -10.86909 -10.79605 -10.66022 -10.56885 -10.50149 -10.32567 -10.05640 -9.60737 -9.51105 -9.19224 -9.01994 -8.53259 -8.14964 -6.22954 -4.19540 2.99012 3.31464 3.36849 3.41575 3.61632 4.32059 4.54121 4.63302 4.67445 4.75772 4.82657 4.88014 4.96513 5.15245 5.25612 5.29025 5.36965 5.41407 5.48323 5.58044 5.59979 5.61190 5.64028 5.73050 5.82111 5.85980 5.87532 5.88641 5.89553 5.99371 6.00773 6.07557 6.13520 6.22763 6.23508 6.27735 6.41125 6.43060 6.49035 6.67928 6.84018 6.98885 7.07137 7.62212 7.92319 8.38436 8.62315 8.80906 9.39604 10.88797 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023311 B = 0.004565 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.856784 B = 6131.931019 C = 6749.487378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.102 4.102 5 C -0.106 4.106 6 H 0.091 0.909 7 C 0.511 3.489 8 O -0.545 6.545 9 N -0.725 5.725 10 C 0.128 3.872 11 C 0.005 3.995 12 C -0.486 4.486 13 H 0.082 0.918 14 C 0.079 3.921 15 N -0.886 5.886 16 Si 0.886 3.114 17 H -0.272 1.272 18 H -0.297 1.297 19 H -0.263 1.263 20 C -0.211 4.211 21 C -0.195 4.195 22 C -0.084 4.084 23 C -0.172 4.172 24 C -0.153 4.153 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.400 0.600 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.268 0.732 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.056 0.944 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.576 -4.097 -3.116 22.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.140 4.140 5 C -0.127 4.127 6 H 0.109 0.891 7 C 0.297 3.703 8 O -0.423 6.423 9 N -0.380 5.380 10 C 0.006 3.994 11 C 0.004 3.996 12 C -0.523 4.523 13 H 0.100 0.900 14 C -0.126 4.126 15 N -0.522 5.522 16 Si 0.718 3.282 17 H -0.199 1.199 18 H -0.224 1.224 19 H -0.189 1.189 20 C -0.249 4.249 21 C -0.233 4.233 22 C -0.103 4.103 23 C -0.229 4.229 24 C -0.210 4.210 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.239 0.761 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.898 -4.917 -3.057 21.686 hybrid contribution -0.492 -0.245 0.606 0.818 sum -21.390 -5.162 -2.451 22.140 Atomic orbital electron populations 1.21777 0.96081 1.01412 1.01670 1.21526 0.95541 0.97061 1.02174 1.21693 0.95331 0.96750 1.02018 1.21442 0.94451 0.94493 1.03620 1.21489 0.92763 0.99315 0.99142 0.89108 1.20558 0.89679 0.83880 0.76169 1.90684 1.69516 1.32041 1.50055 1.46682 1.08706 1.08590 1.74030 1.21709 0.77747 0.98140 1.01838 1.19558 0.94466 0.86588 0.98986 1.20291 0.85593 1.06159 1.40242 0.89968 1.24997 0.94717 0.97675 0.95163 1.69886 1.03217 1.35235 1.43859 0.86996 0.77614 0.82951 0.80658 1.19862 1.22450 1.18944 1.23205 1.02964 1.06744 0.91969 1.22902 1.01532 1.02686 0.96139 1.21087 1.00712 0.95213 0.93261 1.22285 1.03172 0.95271 1.02206 1.21933 1.01018 1.00127 0.97919 0.92856 0.92837 0.92956 0.92003 0.92031 0.92122 0.91699 0.90817 0.91304 0.76133 0.91405 0.91046 0.92176 0.91431 0.89306 0.89428 0.90937 0.89976 0.90930 0.91991 0.92370 0.92266 0.92503 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.13 -1.06 5.93 -26.73 -0.16 -1.22 16 3 C -0.12 -1.08 5.09 -26.73 -0.14 -1.22 16 4 C -0.10 -1.21 3.90 -26.73 -0.10 -1.32 16 5 C -0.11 -1.32 2.01 -91.77 -0.18 -1.51 16 6 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 7 C 0.51 8.98 5.39 -10.99 -0.06 8.92 16 8 O -0.55 -11.80 15.95 5.56 0.09 -11.72 16 9 N -0.73 -13.10 3.83 -60.30 -0.23 -13.33 16 10 C 0.13 2.87 4.27 -4.04 -0.02 2.85 16 11 C 0.01 0.12 1.90 -155.66 -0.30 -0.17 16 12 C -0.49 -13.38 9.59 -34.44 -0.33 -13.71 16 13 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 14 C 0.08 2.25 5.44 -17.82 -0.10 2.15 16 15 N -0.89 -26.64 13.96 55.43 0.77 -25.87 16 16 Si 0.89 22.71 24.07 -169.99 -4.09 18.62 16 17 H -0.27 -7.12 7.11 56.52 0.40 -6.71 16 18 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 19 H -0.26 -6.56 6.41 56.52 0.36 -6.20 16 20 C -0.21 -4.22 9.49 -26.69 -0.25 -4.47 16 21 C -0.20 -3.69 9.45 -26.69 -0.25 -3.95 16 22 C -0.08 -0.90 2.59 -90.62 -0.23 -1.13 16 23 C -0.17 -1.80 8.04 37.16 0.30 -1.50 16 24 C -0.15 -1.82 8.63 37.16 0.32 -1.50 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.53 6.35 -51.93 -0.33 0.20 16 32 H 0.07 0.93 6.41 -51.93 -0.33 0.60 16 33 H 0.07 0.92 8.00 -51.93 -0.42 0.50 16 34 H 0.40 6.19 3.51 -40.82 -0.14 6.05 16 35 H 0.07 1.68 2.44 -51.93 -0.13 1.56 16 36 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 37 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.07 1.22 7.46 -51.93 -0.39 0.84 16 39 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 40 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 41 H 0.07 1.16 5.37 -51.93 -0.28 0.88 16 42 H 0.08 0.72 6.31 -51.93 -0.33 0.39 16 43 H 0.07 0.92 4.29 -51.93 -0.22 0.69 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.67 6.68 -51.93 -0.35 0.32 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.06 0.89 6.86 -51.93 -0.36 0.54 16 LS Contribution 355.96 15.07 5.36 5.36 Total: -1.00 -31.05 355.96 -7.59 -38.64 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -8.36 Total: 6.79 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -1.14 Total: -18.50 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.54 Total: -39.19 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.09 Total: 18.62 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.05 -7.59 -38.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598697851.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.500 kcal (2) G-P(sol) polarization free energy of solvation -31.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds