Wall clock time and date at job start Tue Mar 31 2020 06:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46905 * 2 1 4 4 C 1.52997 * 109.46872 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46748 * 183.99524 * 4 3 2 6 6 H 1.08995 * 109.47244 * 306.67048 * 5 4 3 7 7 C 1.50702 * 109.46819 * 186.67411 * 5 4 3 8 8 O 1.21280 * 119.99944 * 339.80754 * 7 5 4 9 9 N 1.34774 * 119.99991 * 159.81404 * 7 5 4 10 10 C 1.46506 * 119.99960 * 185.21752 * 9 7 5 11 11 C 1.52995 * 109.47369 * 175.99658 * 10 9 7 12 12 C 1.50705 * 115.54831 * 305.50835 * 11 10 9 13 13 H 1.08001 * 119.99711 * 150.55736 * 12 11 10 14 14 C 1.37878 * 119.99750 * 330.54856 * 12 11 10 15 15 N 1.31516 * 119.99849 * 167.52592 * 14 12 11 16 16 Si 1.86795 * 120.00151 * 347.53312 * 14 12 11 17 17 H 1.48502 * 109.47441 * 88.91925 * 16 14 12 18 18 H 1.48499 * 109.46954 * 208.92140 * 16 14 12 19 19 H 1.48506 * 109.46962 * 328.91602 * 16 14 12 20 20 C 1.52995 * 117.50325 * 159.83035 * 11 10 9 21 21 C 1.52997 * 117.49900 * 91.17048 * 11 10 9 22 22 C 1.52994 * 109.47039 * 66.67786 * 5 4 3 23 23 C 1.52992 * 109.47656 * 65.00846 * 22 5 4 24 24 C 1.53000 * 109.47284 * 185.00985 * 22 5 4 25 25 H 1.08999 * 109.47209 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46847 * 299.99760 * 1 2 3 27 27 H 1.08993 * 109.47103 * 59.99643 * 1 2 3 28 28 H 1.08994 * 109.47158 * 240.00446 * 2 1 3 29 29 H 1.09002 * 109.47072 * 120.00084 * 2 1 3 30 30 H 1.09007 * 109.47172 * 60.00439 * 3 2 1 31 31 H 1.08994 * 109.47287 * 300.00586 * 3 2 1 32 32 H 1.09001 * 109.46874 * 63.99772 * 4 3 2 33 33 H 1.08997 * 109.47599 * 303.99697 * 4 3 2 34 34 H 0.96996 * 120.00492 * 5.20739 * 9 7 5 35 35 H 1.09003 * 109.46562 * 295.99657 * 10 9 7 36 36 H 1.09003 * 109.47428 * 55.99545 * 10 9 7 37 37 H 0.96994 * 119.99629 * 179.97438 * 15 14 12 38 38 H 1.09004 * 117.49693 * 0.02562 * 20 11 10 39 39 H 1.09001 * 117.49942 * 145.02129 * 20 11 10 40 40 H 1.09001 * 117.50181 * 214.98465 * 21 11 10 41 41 H 1.09006 * 117.50018 * 359.97438 * 21 11 10 42 42 H 1.09005 * 109.46998 * 305.00665 * 22 5 4 43 43 H 1.09004 * 109.47229 * 64.39666 * 23 22 5 44 44 H 1.09002 * 109.47496 * 184.40011 * 23 22 5 45 45 H 1.09004 * 109.47219 * 304.39827 * 23 22 5 46 46 H 1.09006 * 109.47193 * 59.53085 * 24 22 5 47 47 H 1.08998 * 109.47418 * 179.53587 * 24 22 5 48 48 H 1.09005 * 109.47250 * 299.53760 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8816 0.1012 6 1 3.6227 3.4847 -0.6832 7 6 5.5779 2.8963 -0.0627 8 8 6.2182 1.8832 0.1230 9 7 6.2060 4.0353 -0.4156 10 6 7.6458 4.0242 -0.6863 11 6 8.0867 5.4109 -1.1590 12 6 7.3318 5.9655 -2.3396 13 1 7.2126 7.0331 -2.4511 14 6 6.7935 5.1100 -3.2773 15 7 5.9350 5.5630 -4.1647 16 14 7.2834 3.3074 -3.2873 17 1 6.3736 2.5422 -2.3973 18 1 7.1857 2.7756 -4.6703 19 1 8.6804 3.1715 -2.8022 20 6 9.5725 5.7570 -1.0447 21 6 8.5607 6.4024 -0.0946 22 6 3.7108 3.4590 1.4690 23 6 4.4521 2.6898 2.5643 24 6 4.1092 4.9352 1.5239 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9564 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 3.9337 0.9919 -0.9228 33 1 3.9330 0.8681 0.8528 34 1 5.7049 4.8624 -0.4904 35 1 8.1847 3.7624 0.2243 36 1 7.8641 3.2897 -1.4616 37 1 5.5567 4.9612 -4.8246 38 1 10.2362 4.9966 -0.6331 39 1 10.0041 6.3861 -1.8232 40 1 8.3270 7.4559 -0.2484 41 1 8.5582 6.0670 0.9425 42 1 2.6359 3.3668 1.6243 43 1 5.5254 2.8460 2.4551 44 1 4.1303 3.0488 3.5419 45 1 4.2289 1.6265 2.4762 46 1 3.5874 5.4818 0.7383 47 1 3.8388 5.3488 2.4954 48 1 5.1854 5.0269 1.3767 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598697852.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:00 Heat of formation + Delta-G solvation = -33.544874 kcal Electronic energy + Delta-G solvation = -23866.555061 eV Core-core repulsion = 20728.692242 eV Total energy + Delta-G solvation = -3137.862819 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.93818 -37.43246 -36.33689 -34.72483 -33.33072 -32.28533 -30.83587 -27.87708 -26.92675 -26.31843 -24.98351 -22.52088 -21.65399 -21.45285 -20.40145 -19.51408 -18.64952 -16.78078 -16.38488 -15.80282 -15.64778 -15.37924 -14.86009 -14.17112 -13.97191 -13.64122 -13.50584 -13.41597 -13.08103 -12.84092 -12.66949 -12.49216 -12.35386 -12.03638 -11.86520 -11.53768 -11.37327 -11.16026 -10.94343 -10.92366 -10.81573 -10.64862 -10.58889 -10.49614 -10.33650 -10.15850 -9.90158 -9.65253 -9.37298 -9.05781 -8.91480 -8.42905 -8.08923 -6.27046 -4.21179 3.18985 3.33828 3.38964 3.42744 3.84169 4.31088 4.69654 4.74880 4.84127 4.96358 5.03091 5.08248 5.12889 5.33266 5.35957 5.46183 5.56655 5.63749 5.64760 5.71418 5.75818 5.78608 5.79472 5.85987 5.91137 5.99426 6.04279 6.07729 6.11951 6.13352 6.16132 6.22689 6.23451 6.34385 6.41685 6.45881 6.47745 6.52142 6.61362 6.63306 6.83636 7.07809 7.21579 7.61680 8.27856 8.38379 8.77980 8.90520 9.37788 10.83644 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017981 B = 0.005699 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.797628 B = 4912.154901 C = 5585.188309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.101 4.101 5 C -0.106 4.106 6 H 0.092 0.908 7 C 0.519 3.481 8 O -0.559 6.559 9 N -0.702 5.702 10 C 0.133 3.867 11 C -0.004 4.004 12 C -0.490 4.490 13 H 0.080 0.920 14 C 0.085 3.915 15 N -0.884 5.884 16 Si 0.892 3.108 17 H -0.267 1.267 18 H -0.305 1.305 19 H -0.271 1.271 20 C -0.203 4.203 21 C -0.190 4.190 22 C -0.083 4.083 23 C -0.149 4.149 24 C -0.163 4.163 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.411 0.589 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.267 0.733 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.056 0.944 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.144 -5.766 10.592 14.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.159 4.159 4 C -0.139 4.139 5 C -0.128 4.128 6 H 0.111 0.889 7 C 0.306 3.694 8 O -0.438 6.438 9 N -0.354 5.354 10 C 0.010 3.990 11 C -0.005 4.005 12 C -0.527 4.527 13 H 0.098 0.902 14 C -0.119 4.119 15 N -0.519 5.519 16 Si 0.725 3.275 17 H -0.193 1.193 18 H -0.234 1.234 19 H -0.198 1.198 20 C -0.241 4.241 21 C -0.227 4.227 22 C -0.102 4.102 23 C -0.207 4.207 24 C -0.221 4.221 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.248 0.752 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.824 -6.501 10.527 14.639 hybrid contribution 0.211 -0.473 -0.281 0.589 sum -7.613 -6.974 10.247 14.546 Atomic orbital electron populations 1.21777 0.96116 1.01289 1.01732 1.21523 0.95517 0.97170 1.02016 1.21697 0.95388 0.96613 1.02169 1.21443 0.94507 0.94750 1.03215 1.21447 0.93057 0.99042 0.99228 0.88936 1.20378 0.89712 0.83279 0.76051 1.90611 1.67977 1.33495 1.51744 1.46144 1.09803 1.11457 1.68003 1.21310 0.80830 0.97737 0.99113 1.19524 0.93222 0.90915 0.96836 1.20312 1.32923 0.94889 1.04528 0.90247 1.24952 0.93381 0.98567 0.95037 1.69921 1.27068 1.36464 1.18475 0.87007 0.79837 0.85553 0.75132 1.19332 1.23428 1.19831 1.23093 0.94439 1.03818 1.02780 1.22854 1.06724 0.98860 0.94272 1.21061 1.00545 0.95353 0.93207 1.21918 1.00893 1.00358 0.97495 1.22094 1.02892 0.95121 1.01962 0.93053 0.92860 0.92773 0.92098 0.92128 0.91694 0.91938 0.91754 0.90783 0.75192 0.92907 0.91885 0.92333 0.91247 0.89431 0.89827 0.90952 0.90169 0.92428 0.92984 0.92182 0.91981 0.92501 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.12 -1.28 5.93 -26.73 -0.16 -1.44 16 3 C -0.12 -1.37 5.09 -26.73 -0.14 -1.51 16 4 C -0.10 -1.45 3.93 -26.73 -0.11 -1.56 16 5 C -0.11 -1.64 1.97 -91.77 -0.18 -1.82 16 6 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 7 C 0.52 10.16 3.84 -10.99 -0.04 10.12 16 8 O -0.56 -12.52 15.83 5.56 0.09 -12.44 16 9 N -0.70 -14.25 3.27 -60.29 -0.20 -14.44 16 10 C 0.13 2.93 4.37 -4.04 -0.02 2.91 16 11 C 0.00 -0.08 1.63 -155.66 -0.25 -0.34 16 12 C -0.49 -12.83 9.02 -34.44 -0.31 -13.14 16 13 H 0.08 2.26 8.06 -52.49 -0.42 1.83 16 14 C 0.09 2.31 5.27 -17.82 -0.09 2.21 16 15 N -0.88 -25.30 13.96 55.43 0.77 -24.53 16 16 Si 0.89 22.37 23.39 -169.99 -3.98 18.39 16 17 H -0.27 -6.68 5.21 56.52 0.29 -6.38 16 18 H -0.31 -7.83 7.11 56.52 0.40 -7.43 16 19 H -0.27 -6.77 6.50 56.52 0.37 -6.41 16 20 C -0.20 -4.15 9.96 -26.70 -0.27 -4.42 16 21 C -0.19 -3.69 9.92 -26.70 -0.26 -3.96 16 22 C -0.08 -1.06 2.58 -90.63 -0.23 -1.29 16 23 C -0.15 -1.94 8.58 37.15 0.32 -1.62 16 24 C -0.16 -2.08 8.37 37.16 0.31 -1.76 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.67 6.36 -51.93 -0.33 0.34 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 1.07 6.15 -51.93 -0.32 0.75 16 34 H 0.41 8.08 6.59 -40.82 -0.27 7.81 16 35 H 0.05 1.11 8.09 -51.93 -0.42 0.69 16 36 H 0.06 1.54 2.43 -51.93 -0.13 1.41 16 37 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 40 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.08 0.88 6.34 -51.93 -0.33 0.55 16 43 H 0.06 0.88 7.15 -51.93 -0.37 0.50 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.77 6.24 -51.93 -0.32 0.45 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.07 0.96 5.89 -51.93 -0.31 0.66 16 LS Contribution 359.39 15.07 5.42 5.42 Total: -1.00 -29.28 359.39 -7.80 -37.08 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -8.84 Total: 9.11 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -1.07 Total: -18.58 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.58 Total: -38.97 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.09 Total: -12.44 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -3.98 Total: 18.39 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.28 -7.80 -37.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598697852.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.532 kcal (2) G-P(sol) polarization free energy of solvation -29.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds