Wall clock time and date at job start Tue Mar 31 2020 05:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.50704 * 109.47137 * 295.00578 * 4 2 1 6 6 H 1.07991 * 120.00119 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99876 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00278 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00180 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46784 * 59.99793 * 9 7 5 11 11 H 1.48494 * 109.47471 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47106 * 300.00138 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 N 1.46910 * 109.47127 * 65.00091 * 13 2 1 15 15 C 1.46897 * 111.00178 * 180.02562 * 14 13 2 16 16 C 1.50693 * 109.47318 * 180.02562 * 15 14 13 17 17 N 1.33317 * 126.55319 * 90.02187 * 16 15 14 18 18 N 1.28995 * 107.35431 * 180.02562 * 17 16 15 19 19 N 1.28783 * 108.72925 * 359.97438 * 18 17 16 20 20 C 1.46496 * 125.44742 * 180.02562 * 19 18 17 21 21 C 1.53003 * 109.47366 * 359.97138 * 20 19 18 22 22 C 1.53004 * 109.46876 * 119.97401 * 20 19 18 23 23 C 1.53000 * 109.46923 * 239.97170 * 20 19 18 24 24 N 1.28881 * 109.09749 * 359.73266 * 19 18 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 29 29 H 1.08997 * 109.47756 * 174.99755 * 4 2 1 30 30 H 0.96996 * 120.00275 * 180.02562 * 8 7 5 31 31 H 1.08996 * 109.47729 * 184.99759 * 13 2 1 32 32 H 1.09001 * 109.47563 * 305.00337 * 13 2 1 33 33 H 1.00896 * 110.99608 * 56.04490 * 14 13 2 34 34 H 1.09005 * 109.47233 * 300.00192 * 15 14 13 35 35 H 1.09006 * 109.47211 * 59.99522 * 15 14 13 36 36 H 1.09001 * 109.46708 * 59.99923 * 21 20 19 37 37 H 1.09003 * 109.46974 * 179.97438 * 21 20 19 38 38 H 1.08990 * 109.47205 * 300.00417 * 21 20 19 39 39 H 1.08994 * 109.47057 * 59.99946 * 22 20 19 40 40 H 1.09004 * 109.46576 * 179.97438 * 22 20 19 41 41 H 1.08991 * 109.46885 * 299.99327 * 22 20 19 42 42 H 1.09002 * 109.47167 * 60.00291 * 23 20 19 43 43 H 1.09001 * 109.46889 * 179.97438 * 23 20 19 44 44 H 1.08994 * 109.47399 * 300.00291 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0572 2.4766 6 1 1.0805 0.9746 2.3757 7 6 1.9923 -0.4021 3.7283 8 7 2.6747 -1.5196 3.8513 9 14 1.4986 0.5629 5.2497 10 1 0.0187 0.6705 5.3089 11 1 1.9925 -0.1377 6.4622 12 1 2.0917 1.9230 5.1872 13 6 2.0400 -0.7212 -1.2491 14 7 1.6515 0.0374 -2.4456 15 6 2.1249 -0.6271 -3.6672 16 6 1.7090 0.1786 -4.8708 17 7 2.4055 1.1559 -5.4513 18 7 1.7064 1.5887 -6.4453 19 7 0.6083 0.9182 -6.5015 20 6 -0.4538 1.1089 -7.4922 21 6 -0.0587 2.2314 -8.4539 22 6 -0.6570 -0.1881 -8.2781 23 6 -1.7550 1.4825 -6.7793 24 7 0.5962 0.0484 -5.5505 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.6054 -1.7198 1.2952 29 1 3.1263 -0.7995 1.2057 30 1 2.9213 -1.8429 4.7319 31 1 3.1263 -0.7994 -1.2055 32 1 1.6054 -1.7198 -1.2951 33 1 1.9882 0.9873 -2.3966 34 1 3.2118 -0.7051 -3.6405 35 1 1.6905 -1.6250 -3.7296 36 1 0.8683 1.9652 -8.9617 37 1 -0.8489 2.3729 -9.1913 38 1 0.0861 3.1552 -7.8941 39 1 -0.9385 -0.9877 -7.5929 40 1 -1.4477 -0.0463 -9.0149 41 1 0.2699 -0.4542 -8.7859 42 1 -1.6102 2.4065 -6.2195 43 1 -2.5452 1.6248 -7.5165 44 1 -2.0365 0.6829 -6.0942 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602707251.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:26 Heat of formation + Delta-G solvation = 104.300883 kcal Electronic energy + Delta-G solvation = -21766.387033 eV Core-core repulsion = 18563.254063 eV Total energy + Delta-G solvation = -3203.132971 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.191 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.38354 -38.04032 -36.94137 -34.38816 -33.44215 -32.50476 -31.46588 -28.20897 -28.03613 -27.34150 -26.46739 -24.71563 -24.41959 -22.36785 -21.80702 -20.75803 -19.11924 -17.32044 -17.26906 -16.32878 -15.69028 -14.93606 -14.78064 -14.55086 -14.50867 -14.05203 -14.03434 -13.59799 -13.24070 -12.98218 -12.90459 -12.65880 -12.37638 -12.34347 -12.17443 -11.95236 -11.83642 -11.53005 -11.48387 -11.31891 -10.93575 -10.88948 -10.81827 -10.73793 -10.31292 -10.25673 -10.16763 -9.67128 -9.12085 -8.94479 -8.29567 -8.19953 -5.94620 -3.95579 1.20907 1.71887 2.13540 3.36882 3.41035 3.43749 3.66335 3.97791 4.05136 4.15516 4.47515 4.49927 4.65697 4.90201 4.93174 4.99545 5.09445 5.14677 5.16657 5.32323 5.41158 5.45090 5.46264 5.59889 5.64561 5.72703 5.74901 5.85525 5.91626 6.16599 6.17680 6.41798 6.55859 6.70912 7.00657 7.18984 7.20837 7.31081 7.56791 7.72590 7.88478 8.05657 8.37482 8.49685 9.10502 9.67565 11.16903 Molecular weight = 281.19amu Principal moments of inertia in cm(-1) A = 0.036373 B = 0.002628 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.610362 B =10652.309639 C =10905.526389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.054 0.946 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.065 3.935 14 N -0.682 5.682 15 C 0.155 3.845 16 C 0.174 3.826 17 N -0.286 5.286 18 N -0.068 5.068 19 N -0.134 5.134 20 C 0.179 3.821 21 C -0.152 4.152 22 C -0.158 4.158 23 C -0.159 4.159 24 N -0.290 5.290 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.053 0.947 28 H 0.017 0.983 29 H 0.014 0.986 30 H 0.260 0.740 31 H 0.030 0.970 32 H 0.071 0.929 33 H 0.342 0.658 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.088 0.912 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.213 3.707 -26.704 27.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.073 0.927 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.063 4.063 14 N -0.314 5.314 15 C 0.023 3.977 16 C -0.109 4.109 17 N -0.157 5.157 18 N -0.060 5.060 19 N -0.048 5.048 20 C 0.098 3.902 21 C -0.210 4.210 22 C -0.216 4.216 23 C -0.217 4.217 24 N -0.140 5.140 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.035 0.965 29 H 0.032 0.968 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.160 0.840 34 H 0.079 0.921 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.735 3.753 -27.111 28.442 hybrid contribution 0.703 0.318 1.347 1.552 sum -7.032 4.071 -25.765 27.015 Atomic orbital electron populations 1.21588 0.95717 1.00608 1.00085 1.21202 0.96016 0.99009 0.93881 0.92749 1.19120 0.95979 0.95579 0.90312 1.21199 1.34638 1.08266 0.90999 0.92640 1.25015 0.95354 0.95103 0.99066 1.69953 1.39103 1.21188 1.23459 0.86692 0.78885 0.80118 0.82507 1.20294 1.21386 1.20321 1.22196 0.97609 0.97738 0.88751 1.60522 1.64006 1.06161 1.00725 1.20097 0.98457 0.95730 0.83411 1.25584 0.88302 0.97148 0.99828 1.75845 1.24655 1.11361 1.03870 1.78884 0.93763 1.17918 1.15475 1.50499 1.14516 1.19742 1.20036 1.21346 0.84131 0.98904 0.85797 1.22081 1.03374 0.97082 0.98495 1.22225 1.03537 0.95318 1.00564 1.22232 0.94241 1.03532 1.01730 1.74638 1.23203 1.14548 1.01591 0.94075 0.94070 0.92789 0.96472 0.96814 0.93055 0.95155 0.91098 0.83979 0.92056 0.88332 0.90714 0.89363 0.90598 0.90326 0.89269 0.91531 0.91342 0.89318 0.90214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 8.89 37.16 0.33 -2.10 16 2 C -0.08 -1.69 2.48 -90.63 -0.22 -1.91 16 3 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.48 8.41 -34.44 -0.29 -14.77 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 9 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 13 C 0.07 1.12 5.07 -3.82 -0.02 1.10 16 14 N -0.68 -10.36 5.94 -115.06 -0.68 -11.05 16 15 C 0.16 2.06 6.31 -4.98 -0.03 2.03 16 16 C 0.17 2.48 7.88 -156.62 -1.23 1.24 16 17 N -0.29 -4.30 12.50 32.44 0.41 -3.89 16 18 N -0.07 -0.92 12.24 60.35 0.74 -0.18 16 19 N -0.13 -1.56 3.73 0.48 0.00 -1.56 16 20 C 0.18 1.32 1.30 -131.82 -0.17 1.15 16 21 C -0.15 -0.84 7.91 37.16 0.29 -0.54 16 22 C -0.16 -0.89 8.66 37.16 0.32 -0.57 16 23 C -0.16 -1.02 8.67 37.16 0.32 -0.70 16 24 N -0.29 -3.90 11.83 32.46 0.38 -3.51 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 27 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.34 5.25 8.72 -39.29 -0.34 4.90 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 363.07 15.07 5.47 5.47 Total: -1.00 -32.42 363.07 -6.69 -39.11 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -7.80 Total: -1.88 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -0.92 Total: -12.99 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: 1.58 Total: -46.60 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.42 -6.69 -39.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602707251.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.410 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds