Wall clock time and date at job start Tue Mar 31 2020 05:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.50704 * 109.47137 * 295.00578 * 4 2 1 6 6 H 1.07991 * 120.00119 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99876 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00278 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00180 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46784 * 59.99793 * 9 7 5 11 11 H 1.48494 * 109.47471 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47106 * 300.00138 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 N 1.46910 * 109.47127 * 65.00091 * 13 2 1 15 15 C 1.46897 * 111.00178 * 180.02562 * 14 13 2 16 16 C 1.50693 * 109.47318 * 180.02562 * 15 14 13 17 17 N 1.33317 * 126.55319 * 90.02187 * 16 15 14 18 18 N 1.28995 * 107.35431 * 180.02562 * 17 16 15 19 19 N 1.28783 * 108.72925 * 359.97438 * 18 17 16 20 20 C 1.46496 * 125.44742 * 180.02562 * 19 18 17 21 21 C 1.53003 * 109.47366 * 359.97138 * 20 19 18 22 22 C 1.53004 * 109.46876 * 119.97401 * 20 19 18 23 23 C 1.53000 * 109.46923 * 239.97170 * 20 19 18 24 24 N 1.28881 * 109.09749 * 359.73266 * 19 18 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 29 29 H 1.08997 * 109.47756 * 174.99755 * 4 2 1 30 30 H 0.96996 * 120.00275 * 180.02562 * 8 7 5 31 31 H 1.08996 * 109.47729 * 184.99759 * 13 2 1 32 32 H 1.09001 * 109.47563 * 305.00337 * 13 2 1 33 33 H 1.00896 * 110.99608 * 56.04490 * 14 13 2 34 34 H 1.09005 * 109.47233 * 300.00192 * 15 14 13 35 35 H 1.09006 * 109.47211 * 59.99522 * 15 14 13 36 36 H 1.09001 * 109.46708 * 59.99923 * 21 20 19 37 37 H 1.09003 * 109.46974 * 179.97438 * 21 20 19 38 38 H 1.08990 * 109.47205 * 300.00417 * 21 20 19 39 39 H 1.08994 * 109.47057 * 59.99946 * 22 20 19 40 40 H 1.09004 * 109.46576 * 179.97438 * 22 20 19 41 41 H 1.08991 * 109.46885 * 299.99327 * 22 20 19 42 42 H 1.09002 * 109.47167 * 60.00291 * 23 20 19 43 43 H 1.09001 * 109.46889 * 179.97438 * 23 20 19 44 44 H 1.08994 * 109.47399 * 300.00291 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0572 2.4766 6 1 1.0805 0.9746 2.3757 7 6 1.9923 -0.4021 3.7283 8 7 2.6747 -1.5196 3.8513 9 14 1.4986 0.5629 5.2497 10 1 0.0187 0.6705 5.3089 11 1 1.9925 -0.1377 6.4622 12 1 2.0917 1.9230 5.1872 13 6 2.0400 -0.7212 -1.2491 14 7 1.6515 0.0374 -2.4456 15 6 2.1249 -0.6271 -3.6672 16 6 1.7090 0.1786 -4.8708 17 7 2.4055 1.1559 -5.4513 18 7 1.7064 1.5887 -6.4453 19 7 0.6083 0.9182 -6.5015 20 6 -0.4538 1.1089 -7.4922 21 6 -0.0587 2.2314 -8.4539 22 6 -0.6570 -0.1881 -8.2781 23 6 -1.7550 1.4825 -6.7793 24 7 0.5962 0.0484 -5.5505 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.6054 -1.7198 1.2952 29 1 3.1263 -0.7995 1.2057 30 1 2.9213 -1.8429 4.7319 31 1 3.1263 -0.7994 -1.2055 32 1 1.6054 -1.7198 -1.2951 33 1 1.9882 0.9873 -2.3966 34 1 3.2118 -0.7051 -3.6405 35 1 1.6905 -1.6250 -3.7296 36 1 0.8683 1.9652 -8.9617 37 1 -0.8489 2.3729 -9.1913 38 1 0.0861 3.1552 -7.8941 39 1 -0.9385 -0.9877 -7.5929 40 1 -1.4477 -0.0463 -9.0149 41 1 0.2699 -0.4542 -8.7859 42 1 -1.6102 2.4065 -6.2195 43 1 -2.5452 1.6248 -7.5165 44 1 -2.0365 0.6829 -6.0942 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602707251.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:25 Heat of formation + Delta-G solvation = 82.788782 kcal Electronic energy + Delta-G solvation = -21767.319868 eV Core-core repulsion = 18563.254063 eV Total energy + Delta-G solvation = -3204.065805 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.191 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.37445 -38.80786 -38.27517 -35.95399 -34.47628 -34.18023 -32.83414 -29.26996 -28.57044 -28.50039 -27.89581 -26.11093 -25.54964 -24.09260 -22.90775 -21.53770 -20.80804 -18.50032 -18.24476 -17.96767 -16.92437 -16.57916 -16.09206 -15.66408 -15.24115 -15.11749 -15.09621 -14.88399 -14.39621 -14.11291 -13.93627 -13.51084 -13.41708 -13.24928 -13.20373 -13.05416 -12.83316 -12.78123 -12.74054 -12.57373 -12.53449 -12.20158 -12.14983 -12.00137 -11.91129 -11.83938 -11.47910 -11.24758 -11.06112 -10.87927 -10.50759 -9.44687 -8.15621 -6.24261 0.22761 0.95875 1.05951 1.40957 1.43499 1.51155 2.43330 2.76338 3.13165 3.17755 3.41972 3.54333 3.61640 3.69094 4.12849 4.27829 4.33004 4.43838 4.48776 4.54410 4.54508 4.60627 4.62369 4.68818 4.73658 4.74750 4.81418 4.90417 4.94236 5.02996 5.04651 5.13358 5.23734 5.30184 5.37057 5.46641 5.52084 5.56922 5.82465 5.91103 5.93075 6.29505 6.33512 6.91377 7.35503 7.43575 8.96155 Molecular weight = 281.19amu Principal moments of inertia in cm(-1) A = 0.036373 B = 0.002628 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.610362 B =10652.309639 C =10905.526389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.074 4.074 3 H 0.051 0.949 4 C 0.033 3.967 5 C -0.530 4.530 6 H 0.059 0.941 7 C -0.002 4.002 8 N -0.934 5.934 9 Si 0.959 3.041 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.079 3.921 14 N -0.681 5.681 15 C 0.159 3.841 16 C 0.165 3.835 17 N -0.312 5.312 18 N -0.078 5.078 19 N -0.120 5.120 20 C 0.162 3.838 21 C -0.149 4.149 22 C -0.153 4.153 23 C -0.155 4.155 24 N -0.298 5.298 25 H 0.039 0.961 26 H 0.060 0.940 27 H 0.036 0.964 28 H -0.006 1.006 29 H -0.011 1.011 30 H 0.262 0.738 31 H 0.030 0.970 32 H 0.074 0.926 33 H 0.342 0.658 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.067 0.933 37 H 0.124 0.876 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.125 0.875 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.125 0.875 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.762 4.562 -28.189 29.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 H 0.069 0.931 4 C -0.005 4.005 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.199 4.199 8 N -0.575 5.575 9 Si 0.784 3.216 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.194 1.194 13 C -0.050 4.050 14 N -0.313 5.313 15 C 0.027 3.973 16 C -0.118 4.118 17 N -0.183 5.183 18 N -0.070 5.070 19 N -0.036 5.036 20 C 0.083 3.917 21 C -0.207 4.207 22 C -0.212 4.212 23 C -0.213 4.213 24 N -0.149 5.149 25 H 0.058 0.942 26 H 0.079 0.921 27 H 0.055 0.945 28 H 0.012 0.988 29 H 0.008 0.992 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.092 0.908 33 H 0.160 0.840 34 H 0.089 0.911 35 H 0.127 0.873 36 H 0.086 0.914 37 H 0.143 0.857 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.143 0.857 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.143 0.857 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.286 4.624 -28.619 30.441 hybrid contribution 1.126 0.052 1.695 2.035 sum -8.160 4.676 -26.925 28.520 Atomic orbital electron populations 1.21476 0.94835 1.00517 1.00148 1.21009 0.96602 0.98423 0.93282 0.93063 1.19005 0.94305 0.94780 0.92382 1.21611 1.34452 1.08552 0.92177 0.92304 1.25923 0.95310 0.96108 1.02542 1.70085 1.40278 1.22832 1.24307 0.85593 0.78905 0.78782 0.78333 1.19301 1.20971 1.19388 1.21899 0.97431 0.97483 0.88138 1.60431 1.64163 1.06047 1.00666 1.20114 0.99127 0.95819 0.82217 1.25660 0.88585 0.97342 1.00241 1.75806 1.25673 1.12134 1.04699 1.78813 0.94462 1.18322 1.15377 1.51048 1.14550 1.18314 1.19693 1.21997 0.83470 1.00629 0.85595 1.22133 1.04420 0.95610 0.98500 1.22252 1.04450 0.93789 1.00669 1.22259 0.94641 1.02147 1.02293 1.74606 1.23018 1.15162 1.02098 0.94223 0.92096 0.94470 0.98769 0.99241 0.92940 0.95169 0.90774 0.84012 0.91083 0.87252 0.91397 0.85740 0.91753 0.91612 0.85708 0.92139 0.92632 0.85655 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.38 8.89 71.98 0.64 -3.74 16 2 C -0.07 -3.05 2.48 -10.80 -0.03 -3.08 16 3 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 4 C 0.03 1.73 4.45 29.85 0.13 1.86 16 5 C -0.53 -30.24 8.41 25.60 0.22 -30.02 16 6 H 0.06 3.25 7.06 -2.92 -0.02 3.23 16 7 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 8 N -0.93 -57.40 13.29 21.45 0.28 -57.11 16 9 Si 0.96 44.96 29.54 68.60 2.03 46.98 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 13 C 0.08 2.67 5.07 86.30 0.44 3.11 16 14 N -0.68 -20.06 5.94 -517.93 -3.08 -23.14 16 15 C 0.16 4.07 6.31 85.56 0.54 4.61 16 16 C 0.16 4.59 7.88 138.55 1.09 5.68 16 17 N -0.31 -9.34 12.50 -51.27 -0.64 -9.98 16 18 N -0.08 -2.08 12.24 37.02 0.45 -1.63 16 19 N -0.12 -2.70 3.73 -152.39 -0.57 -3.27 16 20 C 0.16 2.08 1.30 3.61 0.00 2.09 16 21 C -0.15 -1.31 7.91 71.98 0.57 -0.74 16 22 C -0.15 -1.38 8.66 71.98 0.62 -0.76 16 23 C -0.16 -1.67 8.67 71.98 0.62 -1.05 16 24 N -0.30 -7.80 11.83 -51.20 -0.61 -8.41 16 25 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.06 2.12 7.75 -2.39 -0.02 2.10 16 27 H 0.04 1.54 6.95 -2.38 -0.02 1.53 16 28 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 29 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 30 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 31 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.34 10.22 8.72 -89.70 -0.78 9.44 16 34 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.11 2.56 8.14 -2.38 -0.02 2.54 16 36 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.12 0.23 8.14 -2.38 -0.02 0.21 16 41 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -70.59 363.07 3.37 -67.22 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 0.18 Total: 10.99 kcal Atomic # 6 Polarization: -26.97 SS G_CDS: 5.31 Total: -21.66 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -4.15 Total: -103.54 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -70.59 3.37 -67.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602707251.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.007 kcal (2) G-P(sol) polarization free energy of solvation -70.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds