Wall clock time and date at job start Tue Mar 31 2020 05:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99718 * 2 1 4 4 C 1.53003 * 112.85015 * 50.33971 * 3 2 1 5 5 C 1.53774 * 113.61779 * 279.13434 * 3 2 1 6 6 C 1.53779 * 87.08516 * 220.02245 * 5 3 2 7 7 H 1.09002 * 113.61585 * 270.88576 * 6 5 3 8 8 N 1.46897 * 113.61543 * 140.06656 * 6 5 3 9 9 C 1.46901 * 111.00387 * 181.85960 * 8 6 5 10 10 C 1.46903 * 111.00099 * 57.89831 * 8 6 5 11 11 C 1.52999 * 109.47017 * 196.30293 * 10 8 6 12 12 C 1.50703 * 115.55036 * 269.52278 * 11 10 8 13 13 H 1.08003 * 119.99919 * 114.68343 * 12 11 10 14 14 C 1.37879 * 119.99751 * 294.67863 * 12 11 10 15 15 N 1.31511 * 120.00136 * 351.96316 * 14 12 11 16 16 Si 1.86804 * 119.99657 * 171.96479 * 14 12 11 17 17 H 1.48503 * 109.46789 * 60.00385 * 16 14 12 18 18 H 1.48495 * 109.46819 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46960 * 300.00254 * 16 14 12 20 20 C 1.53002 * 117.49881 * 123.81811 * 11 10 8 21 21 C 1.52997 * 117.49886 * 55.19481 * 11 10 8 22 22 C 1.53783 * 113.61028 * 181.52764 * 3 2 1 23 23 C 1.53001 * 113.61608 * 254.52834 * 22 3 2 24 24 C 1.52998 * 113.61671 * 25.43521 * 22 3 2 25 25 H 1.08997 * 109.47225 * 59.99943 * 1 2 3 26 26 H 1.09004 * 109.46834 * 300.00195 * 1 2 3 27 27 H 1.08997 * 109.47260 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47375 * 69.66386 * 4 3 2 29 29 H 1.09002 * 109.46839 * 189.66824 * 4 3 2 30 30 H 1.09003 * 109.46797 * 309.65634 * 4 3 2 31 31 H 1.08998 * 113.61561 * 334.57666 * 5 3 2 32 32 H 1.09004 * 113.61357 * 105.47152 * 5 3 2 33 33 H 1.08998 * 109.46841 * 62.48220 * 9 8 6 34 34 H 1.08998 * 109.47143 * 182.48769 * 9 8 6 35 35 H 1.09006 * 109.46553 * 302.49078 * 9 8 6 36 36 H 1.08995 * 109.47212 * 316.30385 * 10 8 6 37 37 H 1.08997 * 109.46515 * 76.30403 * 10 8 6 38 38 H 0.97002 * 120.00085 * 185.00579 * 15 14 12 39 39 H 1.09011 * 117.49475 * 359.97438 * 20 11 10 40 40 H 1.08996 * 117.50121 * 145.01762 * 20 11 10 41 41 H 1.09000 * 117.50108 * 214.97610 * 21 11 10 42 42 H 1.08998 * 117.50326 * 359.97438 * 21 11 10 43 43 H 1.08998 * 109.46649 * 79.51189 * 23 22 3 44 44 H 1.08998 * 109.47148 * 199.50304 * 23 22 3 45 45 H 1.08993 * 109.47412 * 319.50715 * 23 22 3 46 46 H 1.09006 * 109.47154 * 57.66254 * 24 22 3 47 47 H 1.08998 * 109.47422 * 177.65849 * 24 22 3 48 48 H 1.08994 * 109.47090 * 297.66746 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4297 2.2143 1.0854 5 6 2.0564 1.9593 -1.3911 6 6 3.4515 2.4835 -1.0119 7 1 3.4333 3.4535 -0.5150 8 7 4.4215 2.4250 -2.1135 9 6 5.7426 2.8969 -1.6774 10 6 3.9463 3.1892 -3.2746 11 6 4.7497 2.7874 -4.5131 12 6 5.9917 3.6001 -4.7741 13 1 6.9642 3.1342 -4.7151 14 6 5.8863 4.9385 -5.0883 15 7 4.7049 5.4695 -5.3157 16 14 7.4218 5.9974 -5.1911 17 1 8.3286 5.4543 -6.2342 18 1 7.0408 7.3888 -5.5429 19 1 8.1166 5.9905 -3.8787 20 6 3.9694 2.2793 -5.7271 21 6 4.7871 1.3025 -4.8797 22 6 3.5475 1.2953 -0.0376 23 6 4.1957 1.6505 1.3020 24 6 4.1369 0.0319 -0.6679 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.7549 1.8637 2.0650 29 1 1.7796 3.2349 0.9302 30 1 0.3411 2.1917 1.0343 31 1 2.0677 1.2411 -2.2109 32 1 1.3161 2.7475 -1.5279 33 1 6.1210 2.2427 -0.8920 34 1 6.4301 2.8848 -2.5231 35 1 5.6566 3.9134 -1.2934 36 1 2.8904 2.9770 -3.4418 37 1 4.0774 4.2548 -3.0864 38 1 4.6358 6.3921 -5.6074 39 1 2.8836 2.2309 -5.6432 40 1 4.3541 2.5328 -6.7149 41 1 5.7099 0.9134 -5.3101 42 1 4.2398 0.6117 -4.2384 43 1 4.1801 0.7785 1.9558 44 1 5.2272 1.9612 1.1356 45 1 3.6419 2.4648 1.7691 46 1 3.7531 -0.0812 -1.6819 47 1 5.2234 0.1136 -0.6977 48 1 3.8539 -0.8367 -0.0734 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602786503.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:17 Heat of formation + Delta-G solvation = 5.104195 kcal Electronic energy + Delta-G solvation = -24395.061457 eV Core-core repulsion = 21258.874587 eV Total energy + Delta-G solvation = -3136.186870 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.61944 -37.32180 -36.12937 -33.68728 -31.95387 -30.69310 -29.18971 -27.02364 -26.45409 -26.34830 -25.55790 -23.72914 -21.85345 -21.06986 -20.67415 -18.69103 -17.58458 -16.29112 -16.06045 -15.54712 -15.16203 -14.86381 -14.58727 -14.11221 -13.84321 -13.65948 -13.57469 -13.14871 -12.77341 -12.47841 -12.30502 -12.00511 -11.79882 -11.72047 -11.65322 -11.48174 -11.37488 -11.17178 -10.92433 -10.90666 -10.68179 -10.54693 -10.43912 -10.32060 -10.08136 -9.95570 -9.74851 -9.28645 -9.17209 -8.73336 -8.40966 -7.99286 -7.36616 -6.00542 -4.03157 3.29783 3.35141 3.37835 3.82261 4.41174 4.55588 4.69284 4.78542 4.86708 5.03206 5.24136 5.30380 5.41028 5.42502 5.47764 5.51853 5.62662 5.68956 5.73911 5.79775 5.91538 5.94084 5.96736 6.06781 6.19628 6.24719 6.26177 6.32680 6.35364 6.44627 6.48280 6.60342 6.66667 6.74879 6.89107 6.93240 6.99198 7.04722 7.12729 7.22581 7.38074 7.55971 7.62238 7.89292 8.06093 8.13523 8.54037 8.96378 9.58610 11.07292 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023694 B = 0.005066 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.441729 B = 5525.277080 C = 5840.266566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.090 3.910 4 C -0.161 4.161 5 C -0.146 4.146 6 C 0.066 3.934 7 H 0.056 0.944 8 N -0.514 5.514 9 C 0.031 3.969 10 C 0.105 3.895 11 C 0.058 3.942 12 C -0.488 4.488 13 H 0.058 0.942 14 C 0.071 3.929 15 N -0.880 5.880 16 Si 0.883 3.117 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.276 1.276 20 C -0.179 4.179 21 C -0.189 4.189 22 C -0.049 4.049 23 C -0.141 4.141 24 C -0.099 4.099 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.045 0.955 34 H 0.092 0.908 35 H 0.010 0.990 36 H 0.043 0.957 37 H 0.044 0.956 38 H 0.259 0.741 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.066 0.934 47 H 0.054 0.946 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.398 -6.891 12.266 15.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.284 6.284 3 C 0.050 3.950 4 C -0.218 4.218 5 C -0.184 4.184 6 C -0.043 4.043 7 H 0.073 0.927 8 N -0.238 5.238 9 C -0.117 4.117 10 C -0.022 4.022 11 C 0.057 3.943 12 C -0.526 4.526 13 H 0.076 0.924 14 C -0.132 4.132 15 N -0.516 5.516 16 Si 0.711 3.289 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.202 1.202 20 C -0.218 4.218 21 C -0.226 4.226 22 C -0.050 4.050 23 C -0.198 4.198 24 C -0.156 4.156 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.115 0.885 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.111 0.889 35 H 0.029 0.971 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.339 -7.327 12.133 15.527 hybrid contribution 0.361 1.908 0.030 1.942 sum -5.978 -5.420 12.164 14.597 Atomic orbital electron populations 1.22685 0.82305 1.02058 0.99835 1.87970 1.18698 1.27022 1.94748 1.22947 0.94210 0.83206 0.94615 1.22122 1.00934 0.99898 0.98841 1.23587 0.96801 1.00392 0.97573 1.22971 0.92732 0.95456 0.93156 0.92676 1.62153 1.01544 1.55599 1.04493 1.22392 0.92157 0.95968 1.01165 1.21601 0.95955 0.95533 0.89121 1.18713 0.95456 0.89925 0.90204 1.20463 0.91188 0.93111 1.47860 0.92409 1.24959 0.95472 0.97770 0.95009 1.69975 1.22492 1.14268 1.44911 0.86799 0.83827 0.79635 0.78615 1.20290 1.21418 1.20175 1.22731 0.95341 1.06122 0.97586 1.22682 1.00805 0.94676 1.04483 1.22008 0.91178 0.96955 0.94842 1.21845 1.00732 1.00987 0.96251 1.21152 0.99926 0.93836 1.00722 0.94190 0.94203 0.90190 0.91498 0.91127 0.92118 0.88462 0.92009 0.93612 0.88925 0.97107 0.93886 0.93745 0.93077 0.92367 0.90751 0.91380 0.91055 0.92731 0.92246 0.92607 0.91530 0.92729 0.93527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.38 101.05 1.05 1.34 16 2 O -0.37 -5.04 9.71 -35.23 -0.34 -5.39 16 3 C 0.09 1.21 1.19 -89.81 -0.11 1.10 16 4 C -0.16 -1.79 7.41 37.16 0.28 -1.52 16 5 C -0.15 -2.23 5.26 -25.92 -0.14 -2.37 16 6 C 0.07 1.08 2.29 -66.81 -0.15 0.92 16 7 H 0.06 0.92 7.60 -51.93 -0.39 0.52 16 8 N -0.51 -9.79 3.52 -233.80 -0.82 -10.61 16 9 C 0.03 0.60 9.31 60.07 0.56 1.16 16 10 C 0.10 2.35 4.78 -3.82 -0.02 2.33 16 11 C 0.06 1.40 1.13 -155.66 -0.18 1.22 16 12 C -0.49 -12.91 6.99 -34.44 -0.24 -13.15 16 13 H 0.06 1.54 7.77 -52.48 -0.41 1.13 16 14 C 0.07 1.90 5.19 -17.82 -0.09 1.81 16 15 N -0.88 -24.59 12.73 55.43 0.71 -23.89 16 16 Si 0.88 20.81 29.55 -169.99 -5.02 15.79 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 C -0.18 -4.25 9.88 -26.73 -0.26 -4.51 16 21 C -0.19 -4.19 9.73 -26.73 -0.26 -4.45 16 22 C -0.05 -0.70 1.15 -153.60 -0.18 -0.88 16 23 C -0.14 -1.75 8.59 37.16 0.32 -1.43 16 24 C -0.10 -1.49 7.79 37.16 0.29 -1.20 16 25 H 0.04 0.42 8.06 -51.93 -0.42 0.00 16 26 H 0.04 0.37 6.39 -51.93 -0.33 0.04 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.69 7.20 -51.93 -0.37 0.32 16 29 H 0.07 0.79 7.17 -51.93 -0.37 0.41 16 30 H 0.06 0.61 6.27 -51.93 -0.33 0.28 16 31 H 0.10 1.65 7.58 -51.93 -0.39 1.26 16 32 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 33 H 0.05 0.76 7.15 -51.93 -0.37 0.39 16 34 H 0.09 2.00 5.86 -51.93 -0.30 1.69 16 35 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.04 0.95 6.45 -51.93 -0.34 0.62 16 37 H 0.04 1.13 7.26 -51.93 -0.38 0.75 16 38 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 39 H 0.06 1.31 8.03 -51.92 -0.42 0.90 16 40 H 0.07 1.85 8.14 -51.93 -0.42 1.42 16 41 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 42 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.75 7.51 -51.93 -0.39 0.36 16 45 H 0.05 0.63 6.12 -51.93 -0.32 0.32 16 46 H 0.07 1.11 7.21 -51.93 -0.37 0.74 16 47 H 0.05 0.82 7.84 -51.93 -0.41 0.42 16 48 H 0.05 0.66 7.92 -51.93 -0.41 0.25 16 LS Contribution 362.57 15.07 5.46 5.46 Total: -1.00 -27.39 362.57 -7.97 -35.36 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -8.82 Total: 2.88 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: 0.87 Total: -19.61 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: -0.12 Total: -34.50 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -0.34 Total: -5.39 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -27.39 -7.97 -35.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602786503.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.465 kcal (2) G-P(sol) polarization free energy of solvation -27.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds