Wall clock time and date at job start Tue Mar 31 2020 05:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99718 * 2 1 4 4 C 1.53003 * 112.85015 * 50.33971 * 3 2 1 5 5 C 1.53774 * 113.61779 * 279.13434 * 3 2 1 6 6 C 1.53779 * 87.08516 * 220.02245 * 5 3 2 7 7 H 1.09002 * 113.61585 * 270.88576 * 6 5 3 8 8 N 1.46897 * 113.61543 * 140.06656 * 6 5 3 9 9 C 1.46901 * 111.00387 * 181.85960 * 8 6 5 10 10 C 1.46903 * 111.00099 * 57.89831 * 8 6 5 11 11 C 1.52999 * 109.47017 * 196.30293 * 10 8 6 12 12 C 1.50703 * 115.55036 * 269.52278 * 11 10 8 13 13 H 1.08003 * 119.99919 * 114.68343 * 12 11 10 14 14 C 1.37879 * 119.99751 * 294.67863 * 12 11 10 15 15 N 1.31511 * 120.00136 * 351.96316 * 14 12 11 16 16 Si 1.86804 * 119.99657 * 171.96479 * 14 12 11 17 17 H 1.48503 * 109.46789 * 60.00385 * 16 14 12 18 18 H 1.48495 * 109.46819 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46960 * 300.00254 * 16 14 12 20 20 C 1.53002 * 117.49881 * 123.81811 * 11 10 8 21 21 C 1.52997 * 117.49886 * 55.19481 * 11 10 8 22 22 C 1.53783 * 113.61028 * 181.52764 * 3 2 1 23 23 C 1.53001 * 113.61608 * 254.52834 * 22 3 2 24 24 C 1.52998 * 113.61671 * 25.43521 * 22 3 2 25 25 H 1.08997 * 109.47225 * 59.99943 * 1 2 3 26 26 H 1.09004 * 109.46834 * 300.00195 * 1 2 3 27 27 H 1.08997 * 109.47260 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47375 * 69.66386 * 4 3 2 29 29 H 1.09002 * 109.46839 * 189.66824 * 4 3 2 30 30 H 1.09003 * 109.46797 * 309.65634 * 4 3 2 31 31 H 1.08998 * 113.61561 * 334.57666 * 5 3 2 32 32 H 1.09004 * 113.61357 * 105.47152 * 5 3 2 33 33 H 1.08998 * 109.46841 * 62.48220 * 9 8 6 34 34 H 1.08998 * 109.47143 * 182.48769 * 9 8 6 35 35 H 1.09006 * 109.46553 * 302.49078 * 9 8 6 36 36 H 1.08995 * 109.47212 * 316.30385 * 10 8 6 37 37 H 1.08997 * 109.46515 * 76.30403 * 10 8 6 38 38 H 0.97002 * 120.00085 * 185.00579 * 15 14 12 39 39 H 1.09011 * 117.49475 * 359.97438 * 20 11 10 40 40 H 1.08996 * 117.50121 * 145.01762 * 20 11 10 41 41 H 1.09000 * 117.50108 * 214.97610 * 21 11 10 42 42 H 1.08998 * 117.50326 * 359.97438 * 21 11 10 43 43 H 1.08998 * 109.46649 * 79.51189 * 23 22 3 44 44 H 1.08998 * 109.47148 * 199.50304 * 23 22 3 45 45 H 1.08993 * 109.47412 * 319.50715 * 23 22 3 46 46 H 1.09006 * 109.47154 * 57.66254 * 24 22 3 47 47 H 1.08998 * 109.47422 * 177.65849 * 24 22 3 48 48 H 1.08994 * 109.47090 * 297.66746 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4297 2.2143 1.0854 5 6 2.0564 1.9593 -1.3911 6 6 3.4515 2.4835 -1.0119 7 1 3.4333 3.4535 -0.5150 8 7 4.4215 2.4250 -2.1135 9 6 5.7426 2.8969 -1.6774 10 6 3.9463 3.1892 -3.2746 11 6 4.7497 2.7874 -4.5131 12 6 5.9917 3.6001 -4.7741 13 1 6.9642 3.1342 -4.7151 14 6 5.8863 4.9385 -5.0883 15 7 4.7049 5.4695 -5.3157 16 14 7.4218 5.9974 -5.1911 17 1 8.3286 5.4543 -6.2342 18 1 7.0408 7.3888 -5.5429 19 1 8.1166 5.9905 -3.8787 20 6 3.9694 2.2793 -5.7271 21 6 4.7871 1.3025 -4.8797 22 6 3.5475 1.2953 -0.0376 23 6 4.1957 1.6505 1.3020 24 6 4.1369 0.0319 -0.6679 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.7549 1.8637 2.0650 29 1 1.7796 3.2349 0.9302 30 1 0.3411 2.1917 1.0343 31 1 2.0677 1.2411 -2.2109 32 1 1.3161 2.7475 -1.5279 33 1 6.1210 2.2427 -0.8920 34 1 6.4301 2.8848 -2.5231 35 1 5.6566 3.9134 -1.2934 36 1 2.8904 2.9770 -3.4418 37 1 4.0774 4.2548 -3.0864 38 1 4.6358 6.3921 -5.6074 39 1 2.8836 2.2309 -5.6432 40 1 4.3541 2.5328 -6.7149 41 1 5.7099 0.9134 -5.3101 42 1 4.2398 0.6117 -4.2384 43 1 4.1801 0.7785 1.9558 44 1 5.2272 1.9612 1.1356 45 1 3.6419 2.4648 1.7691 46 1 3.7531 -0.0812 -1.6819 47 1 5.2234 0.1136 -0.6977 48 1 3.8539 -0.8367 -0.0734 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602786503.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:17 Heat of formation + Delta-G solvation = -8.946223 kcal Electronic energy + Delta-G solvation = -24395.670729 eV Core-core repulsion = 21258.874587 eV Total energy + Delta-G solvation = -3136.796141 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.79168 -38.92380 -37.45526 -35.19395 -34.01172 -31.80668 -30.23188 -28.17609 -28.01287 -27.49344 -27.41545 -25.18436 -23.06633 -22.83990 -22.11143 -20.58710 -18.76329 -18.04166 -17.40239 -16.65483 -16.61057 -16.28723 -16.02612 -15.60703 -15.32468 -15.19204 -14.62485 -14.46006 -14.36396 -13.85551 -13.51350 -13.28203 -13.04469 -13.01016 -12.94465 -12.88187 -12.78964 -12.71799 -12.57058 -12.40686 -12.38041 -12.22815 -11.91430 -11.72492 -11.49970 -11.44990 -10.94452 -10.87207 -10.70378 -10.38435 -10.28433 -9.89491 -8.97662 -8.06912 -6.14040 1.41257 1.42572 1.49057 2.43583 2.79215 3.17928 3.26270 3.51230 3.55074 3.76166 3.81235 3.87154 4.30894 4.37363 4.40821 4.47818 4.56095 4.60642 4.61982 4.66923 4.72114 4.76348 4.78655 4.79451 4.83455 4.91543 4.95193 5.01597 5.04389 5.08780 5.10714 5.12597 5.19651 5.22830 5.28978 5.30814 5.32967 5.39805 5.65904 5.66981 5.67809 5.72927 5.87958 6.36337 6.41327 6.49777 6.57156 6.91650 7.49867 9.00451 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023694 B = 0.005066 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.441729 B = 5525.277080 C = 5840.266566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.383 6.383 3 C 0.102 3.898 4 C -0.159 4.159 5 C -0.148 4.148 6 C 0.058 3.942 7 H 0.055 0.945 8 N -0.511 5.511 9 C 0.038 3.962 10 C 0.125 3.875 11 C 0.037 3.963 12 C -0.496 4.496 13 H 0.050 0.950 14 C 0.028 3.972 15 N -0.908 5.908 16 Si 0.940 3.060 17 H -0.274 1.274 18 H -0.288 1.288 19 H -0.270 1.270 20 C -0.186 4.186 21 C -0.164 4.164 22 C -0.047 4.047 23 C -0.138 4.138 24 C -0.093 4.093 25 H 0.036 0.964 26 H 0.057 0.943 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.003 0.997 36 H 0.041 0.959 37 H 0.008 0.992 38 H 0.258 0.742 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.056 0.944 45 H 0.067 0.933 46 H 0.044 0.956 47 H 0.050 0.950 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.620 -7.616 14.259 17.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.302 6.302 3 C 0.062 3.938 4 C -0.216 4.216 5 C -0.186 4.186 6 C -0.051 4.051 7 H 0.073 0.927 8 N -0.234 5.234 9 C -0.110 4.110 10 C -0.003 4.003 11 C 0.036 3.964 12 C -0.533 4.533 13 H 0.069 0.931 14 C -0.172 4.172 15 N -0.546 5.546 16 Si 0.766 3.234 17 H -0.199 1.199 18 H -0.214 1.214 19 H -0.195 1.195 20 C -0.224 4.224 21 C -0.201 4.201 22 C -0.047 4.047 23 C -0.195 4.195 24 C -0.150 4.150 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.113 0.887 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.021 0.979 36 H 0.059 0.941 37 H 0.026 0.974 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.103 0.897 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.063 0.937 47 H 0.069 0.931 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.557 -8.069 14.135 17.547 hybrid contribution 0.389 2.066 -0.605 2.187 sum -6.168 -6.004 13.530 16.036 Atomic orbital electron populations 1.22881 0.80669 1.03393 1.00485 1.87937 1.20517 1.26982 1.94795 1.22834 0.93697 0.83530 0.93765 1.22123 1.01764 0.99205 0.98468 1.23559 0.96255 1.00172 0.98617 1.23101 0.92628 0.96488 0.92865 0.92749 1.62131 1.02153 1.54372 1.04771 1.22290 0.91752 0.96262 1.00700 1.21227 0.95520 0.93591 0.89967 1.18842 0.95353 0.91129 0.91068 1.20668 0.91659 0.93643 1.47361 0.93145 1.25574 0.97892 0.98822 0.94930 1.70084 1.24171 1.14361 1.46007 0.85898 0.80783 0.77972 0.78741 1.19948 1.21375 1.19538 1.22677 0.95872 1.07180 0.96702 1.22614 1.00390 0.93795 1.03349 1.21980 0.92370 0.95285 0.95110 1.21826 1.00480 1.01997 0.95174 1.21067 0.99578 0.94691 0.99673 0.94544 0.92487 0.88653 0.90099 0.91188 0.90785 0.90409 0.91909 0.90961 0.91545 0.97867 0.94097 0.97355 0.93301 0.91581 0.92471 0.91300 0.89688 0.91448 0.92537 0.91376 0.93710 0.93056 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.38 113.37 1.18 1.58 16 2 O -0.38 -9.72 9.71 -148.98 -1.45 -11.17 16 3 C 0.10 2.52 1.19 -10.27 -0.01 2.51 16 4 C -0.16 -3.07 7.41 71.98 0.53 -2.53 16 5 C -0.15 -4.43 5.26 31.12 0.16 -4.27 16 6 C 0.06 1.84 2.29 45.50 0.10 1.94 16 7 H 0.05 1.76 7.60 -2.39 -0.02 1.74 16 8 N -0.51 -19.42 3.52 -893.60 -3.14 -22.56 16 9 C 0.04 1.45 9.31 127.69 1.19 2.64 16 10 C 0.12 5.69 4.78 86.30 0.41 6.11 16 11 C 0.04 1.81 1.13 -52.93 -0.06 1.75 16 12 C -0.50 -26.59 6.99 25.60 0.18 -26.41 16 13 H 0.05 2.72 7.77 -2.91 -0.02 2.70 16 14 C 0.03 1.51 5.19 84.66 0.44 1.95 16 15 N -0.91 -51.80 12.73 21.45 0.27 -51.52 16 16 Si 0.94 43.10 29.55 68.60 2.03 45.13 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 18 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 20 C -0.19 -8.91 9.88 30.60 0.30 -8.61 16 21 C -0.16 -7.25 9.73 30.59 0.30 -6.95 16 22 C -0.05 -1.24 1.15 -51.59 -0.06 -1.30 16 23 C -0.14 -3.02 8.59 71.98 0.62 -2.40 16 24 C -0.09 -2.65 7.79 71.98 0.56 -2.09 16 25 H 0.04 0.70 8.06 -2.39 -0.02 0.68 16 26 H 0.06 0.87 6.39 -2.39 -0.02 0.86 16 27 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.08 1.37 7.20 -2.39 -0.02 1.35 16 29 H 0.07 1.38 7.17 -2.39 -0.02 1.36 16 30 H 0.07 1.24 6.27 -2.39 -0.01 1.22 16 31 H 0.08 2.64 7.58 -2.39 -0.02 2.62 16 32 H 0.06 1.83 8.10 -2.38 -0.02 1.81 16 33 H 0.07 2.33 7.15 -2.39 -0.02 2.31 16 34 H 0.07 2.88 5.86 -2.39 -0.01 2.87 16 35 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 36 H 0.04 1.85 6.45 -2.39 -0.02 1.83 16 37 H 0.01 0.43 7.26 -2.39 -0.02 0.41 16 38 H 0.26 14.19 8.32 -92.71 -0.77 13.42 16 39 H 0.07 3.01 8.03 -2.38 -0.02 2.99 16 40 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 41 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 42 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 43 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.06 1.27 7.51 -2.39 -0.02 1.25 16 45 H 0.07 1.33 6.12 -2.39 -0.01 1.31 16 46 H 0.04 1.46 7.21 -2.38 -0.02 1.44 16 47 H 0.05 1.47 7.84 -2.39 -0.02 1.45 16 48 H 0.05 1.47 7.92 -2.39 -0.02 1.45 16 Total: -1.00 -58.72 362.57 4.46 -54.27 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.90 Total: 21.93 kcal Atomic # 6 Polarization: -41.92 SS G_CDS: 5.85 Total: -36.07 kcal Atomic # 7 Polarization: -71.21 SS G_CDS: -2.87 Total: -74.08 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -1.45 Total: -11.17 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -58.72 4.46 -54.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602786503.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.321 kcal (2) G-P(sol) polarization free energy of solvation -58.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds