Wall clock time and date at job start Tue Mar 31 2020 05:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42902 * 113.99686 * 2 1 4 4 C 1.52992 * 112.85279 * 308.30579 * 3 2 1 5 5 C 1.53779 * 113.61001 * 79.50742 * 3 2 1 6 6 C 1.53780 * 87.08158 * 89.11278 * 5 3 2 7 7 H 1.08997 * 113.61523 * 270.87432 * 6 5 3 8 8 N 1.46900 * 113.61217 * 140.06295 * 6 5 3 9 9 C 1.46900 * 110.99860 * 186.94019 * 8 6 5 10 10 C 1.46899 * 111.00147 * 62.98483 * 8 6 5 11 11 C 1.53004 * 109.47347 * 197.28380 * 10 8 6 12 12 C 1.50702 * 115.55250 * 281.05502 * 11 10 8 13 13 H 1.07998 * 120.00051 * 114.28656 * 12 11 10 14 14 C 1.37879 * 119.99501 * 294.29073 * 12 11 10 15 15 N 1.31513 * 120.00531 * 337.78736 * 14 12 11 16 16 Si 1.86802 * 119.99786 * 157.79211 * 14 12 11 17 17 H 1.48506 * 109.46900 * 59.99942 * 16 14 12 18 18 H 1.48496 * 109.47107 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47181 * 299.99980 * 16 14 12 20 20 C 1.52998 * 117.49994 * 135.33985 * 11 10 8 21 21 C 1.52991 * 60.00211 * 252.51487 * 20 11 10 22 22 C 1.53778 * 113.61012 * 177.00201 * 3 2 1 23 23 C 1.52997 * 113.61675 * 156.33538 * 22 3 2 24 24 C 1.53000 * 113.61730 * 25.43172 * 22 3 2 25 25 H 1.09002 * 109.46789 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47260 * 299.99877 * 1 2 3 27 27 H 1.08998 * 109.46735 * 60.00159 * 1 2 3 28 28 H 1.08999 * 109.47052 * 171.69389 * 4 3 2 29 29 H 1.08998 * 109.47246 * 291.69543 * 4 3 2 30 30 H 1.09007 * 109.47258 * 51.69036 * 4 3 2 31 31 H 1.08993 * 113.61870 * 334.56031 * 5 3 2 32 32 H 1.09007 * 113.68390 * 203.66975 * 5 3 2 33 33 H 1.08994 * 109.47234 * 59.17813 * 9 8 6 34 34 H 1.09000 * 109.47016 * 179.17661 * 9 8 6 35 35 H 1.08996 * 109.47346 * 299.17198 * 9 8 6 36 36 H 1.08998 * 109.47644 * 317.28637 * 10 8 6 37 37 H 1.08998 * 109.47217 * 77.28901 * 10 8 6 38 38 H 0.96997 * 120.00783 * 185.05685 * 15 14 12 39 39 H 1.09003 * 117.49530 * 0.02562 * 20 11 10 40 40 H 1.08995 * 117.49919 * 145.02140 * 20 11 10 41 41 H 1.09007 * 117.50031 * 252.50782 * 21 20 11 42 42 H 1.09003 * 117.50014 * 107.48753 * 21 20 11 43 43 H 1.08998 * 109.47378 * 161.54895 * 23 22 3 44 44 H 1.08991 * 109.47382 * 281.55576 * 23 22 3 45 45 H 1.09008 * 109.46955 * 41.55356 * 23 22 3 46 46 H 1.09002 * 109.47145 * 322.50372 * 24 22 3 47 47 H 1.08995 * 109.46872 * 82.50521 * 24 22 3 48 48 H 1.09000 * 109.47463 * 202.50637 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4535 2.2037 -1.1063 5 6 2.0263 1.9725 1.3855 6 6 3.3945 1.3053 1.6040 7 1 3.3296 0.3096 2.0425 8 7 4.3671 2.1676 2.2883 9 6 5.6951 1.5406 2.3210 10 6 3.9104 2.5043 3.6433 11 6 4.6935 3.7130 4.1599 12 6 6.0811 3.4192 4.6691 13 1 6.9416 3.8170 4.1517 14 6 6.2520 2.6424 5.7953 15 7 5.2725 2.5195 6.6643 16 14 7.8749 1.7647 6.0871 17 1 8.9701 2.7642 6.1710 18 1 7.8033 1.0017 7.3591 19 1 8.1417 0.8311 4.9636 20 6 3.9031 4.8200 4.8604 21 6 4.4678 5.0535 3.4578 22 6 3.5462 1.2959 0.0737 23 6 4.1946 2.5638 -0.4857 24 6 4.1780 0.0136 -0.4716 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8196 3.2209 -0.9671 29 1 1.7799 1.8297 -2.0767 30 1 0.3643 2.2004 -1.0634 31 1 1.2494 1.6053 2.0560 32 1 2.0725 3.0609 1.3470 33 1 6.0332 1.3523 1.3020 34 1 6.3991 2.2064 2.8201 35 1 5.6385 0.5978 2.8651 36 1 2.8472 2.7434 3.6195 37 1 4.0769 1.6540 4.3046 38 1 5.4161 2.0341 7.4917 39 1 2.8253 4.6869 4.9536 40 1 4.3866 5.3358 5.6900 41 1 5.3228 5.7231 3.3645 42 1 3.7614 5.0743 2.6279 43 1 5.2174 2.6419 -0.1170 44 1 4.2035 2.5172 -1.5746 45 1 3.6248 3.4356 -0.1639 46 1 3.5575 -0.8407 -0.2010 47 1 4.2533 0.0788 -1.5570 48 1 5.1734 -0.1109 -0.0452 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602786505.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:19 Heat of formation + Delta-G solvation = 8.100038 kcal Electronic energy + Delta-G solvation = -24438.827229 eV Core-core repulsion = 21302.770269 eV Total energy + Delta-G solvation = -3136.056960 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.61449 -37.31872 -36.10010 -33.68236 -31.98865 -30.59091 -29.24820 -27.29803 -26.47787 -26.31674 -25.65797 -23.53912 -21.89240 -20.99322 -20.32940 -18.74794 -18.18211 -16.15191 -15.64152 -15.60781 -15.39375 -14.82502 -14.58356 -14.36171 -13.86058 -13.68638 -13.07545 -13.01361 -12.80635 -12.57464 -12.37284 -12.23432 -11.96713 -11.77669 -11.56315 -11.45862 -11.35618 -11.16494 -10.97230 -10.85822 -10.72364 -10.61850 -10.40010 -10.30737 -10.09073 -9.93860 -9.59079 -9.29396 -9.09352 -8.90520 -8.32557 -7.96773 -7.34919 -6.04484 -3.97351 3.29825 3.36249 3.39770 3.68097 4.41376 4.59598 4.67673 4.73282 5.00662 5.15768 5.18774 5.30074 5.36209 5.46678 5.48820 5.55953 5.58431 5.69378 5.71630 5.87513 5.94490 5.96612 6.05148 6.07998 6.14712 6.17907 6.27194 6.34490 6.39033 6.45209 6.49122 6.59853 6.64148 6.73263 6.77990 6.92254 6.93717 7.04012 7.19604 7.22231 7.34469 7.52228 7.62746 7.91357 8.06118 8.17134 8.55393 8.96858 9.58454 11.02724 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.021764 B = 0.005305 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.242083 B = 5276.754787 C = 5594.218721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.091 3.909 4 C -0.164 4.164 5 C -0.147 4.147 6 C 0.069 3.931 7 H 0.057 0.943 8 N -0.514 5.514 9 C 0.025 3.975 10 C 0.104 3.896 11 C 0.057 3.943 12 C -0.496 4.496 13 H 0.060 0.940 14 C 0.078 3.922 15 N -0.867 5.867 16 Si 0.872 3.128 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.274 1.274 20 C -0.175 4.175 21 C -0.192 4.192 22 C -0.051 4.051 23 C -0.109 4.109 24 C -0.133 4.133 25 H 0.081 0.919 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.044 0.956 34 H 0.101 0.899 35 H 0.008 0.992 36 H 0.041 0.959 37 H 0.036 0.964 38 H 0.260 0.740 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.042 0.958 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.049 0.951 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.481 -3.002 -13.781 15.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.280 6.280 3 C 0.051 3.949 4 C -0.221 4.221 5 C -0.185 4.185 6 C -0.040 4.040 7 H 0.074 0.926 8 N -0.237 5.237 9 C -0.123 4.123 10 C -0.023 4.023 11 C 0.056 3.944 12 C -0.533 4.533 13 H 0.078 0.922 14 C -0.126 4.126 15 N -0.502 5.502 16 Si 0.699 3.301 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.199 1.199 20 C -0.214 4.214 21 C -0.229 4.229 22 C -0.052 4.052 23 C -0.166 4.166 24 C -0.190 4.190 25 H 0.100 0.900 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.063 0.937 34 H 0.120 0.880 35 H 0.027 0.973 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.061 0.939 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.068 0.932 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.409 -2.887 -13.876 15.993 hybrid contribution 0.438 -1.162 0.937 1.556 sum -6.972 -4.049 -12.938 15.245 Atomic orbital electron populations 1.22713 0.81878 1.02183 1.00050 1.87897 1.19014 1.26356 1.94772 1.22506 0.94689 0.83231 0.94492 1.22180 1.00771 1.00448 0.98748 1.23564 0.97455 1.01209 0.96307 1.23053 0.92434 0.95042 0.93453 0.92558 1.62175 1.01544 1.40843 1.19117 1.22556 0.92307 0.98082 0.99320 1.21576 0.95839 0.98442 0.86460 1.18713 0.94731 0.84878 0.96032 1.20289 0.90302 1.31666 1.11074 0.92165 1.24922 0.95833 0.96348 0.95529 1.70070 1.32528 1.40166 1.07469 0.86982 0.85013 0.80631 0.77487 1.20228 1.21483 1.19925 1.22698 0.96793 1.07713 0.94173 1.22678 1.01943 1.03835 0.94444 1.21929 0.91132 0.96607 0.95541 1.21413 1.01800 0.95264 0.98143 1.21640 1.00389 0.97094 0.99923 0.90032 0.94083 0.93944 0.90730 0.92116 0.92599 0.91905 0.88549 0.93717 0.88048 0.97307 0.94089 0.94540 0.93008 0.92522 0.90408 0.91231 0.91587 0.91014 0.93856 0.92020 0.91882 0.93230 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.41 101.05 1.05 1.35 16 2 O -0.36 -4.96 9.11 -35.23 -0.32 -5.28 16 3 C 0.09 1.21 1.06 -89.81 -0.09 1.11 16 4 C -0.16 -1.81 8.16 37.15 0.30 -1.51 16 5 C -0.15 -2.22 5.45 -25.92 -0.14 -2.36 16 6 C 0.07 1.17 2.56 -66.90 -0.17 1.00 16 7 H 0.06 1.05 8.10 -51.93 -0.42 0.63 16 8 N -0.51 -9.89 3.73 -233.91 -0.87 -10.76 16 9 C 0.03 0.50 8.82 60.06 0.53 1.03 16 10 C 0.10 2.33 4.87 -3.82 -0.02 2.31 16 11 C 0.06 1.38 1.37 -155.66 -0.21 1.17 16 12 C -0.50 -13.04 6.21 -34.44 -0.21 -13.25 16 13 H 0.06 1.60 7.80 -52.49 -0.41 1.19 16 14 C 0.08 2.09 5.13 -17.82 -0.09 2.00 16 15 N -0.87 -24.33 13.39 55.43 0.74 -23.59 16 16 Si 0.87 20.66 29.60 -169.99 -5.03 15.63 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 C -0.18 -4.13 9.85 -26.74 -0.26 -4.40 16 21 C -0.19 -4.19 9.93 -26.74 -0.27 -4.46 16 22 C -0.05 -0.73 0.83 -153.70 -0.13 -0.86 16 23 C -0.11 -1.48 7.21 37.16 0.27 -1.21 16 24 C -0.13 -1.82 9.04 37.16 0.34 -1.48 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.04 0.43 7.61 -51.93 -0.40 0.03 16 27 H 0.04 0.39 6.42 -51.93 -0.33 0.05 16 28 H 0.07 0.80 6.54 -51.93 -0.34 0.46 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.55 6.35 -51.92 -0.33 0.22 16 31 H 0.06 0.95 7.68 -51.93 -0.40 0.55 16 32 H 0.10 1.48 7.49 -51.93 -0.39 1.09 16 33 H 0.04 0.77 5.91 -51.93 -0.31 0.47 16 34 H 0.10 2.25 5.36 -51.93 -0.28 1.98 16 35 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 36 H 0.04 0.89 6.77 -51.93 -0.35 0.53 16 37 H 0.04 0.93 7.79 -51.93 -0.40 0.52 16 38 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 39 H 0.06 1.27 8.09 -51.93 -0.42 0.85 16 40 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 41 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.07 1.07 6.60 -51.93 -0.34 0.72 16 44 H 0.04 0.51 8.13 -51.93 -0.42 0.08 16 45 H 0.06 0.86 6.28 -51.92 -0.33 0.53 16 46 H 0.06 0.90 6.96 -51.93 -0.36 0.54 16 47 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.05 0.76 7.26 -51.93 -0.38 0.38 16 LS Contribution 360.51 15.07 5.43 5.43 Total: -1.00 -27.33 360.51 -7.86 -35.20 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -8.70 Total: 2.94 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 0.89 Total: -19.57 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: -0.13 Total: -34.35 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.32 Total: -5.28 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -27.33 -7.86 -35.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602786505.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.299 kcal (2) G-P(sol) polarization free energy of solvation -27.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds