Wall clock time and date at job start Tue Mar 31 2020 05:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00096 * 2 1 4 4 C 1.53007 * 112.90814 * 308.25264 * 3 2 1 5 5 C 1.53780 * 113.61514 * 79.50228 * 3 2 1 6 6 C 1.53781 * 87.17320 * 140.02588 * 5 3 2 7 7 H 1.09003 * 113.61527 * 89.07714 * 6 5 3 8 8 N 1.46904 * 113.61608 * 219.89326 * 6 5 3 9 9 C 1.46902 * 110.99958 * 304.14759 * 8 6 5 10 10 C 1.46890 * 111.00141 * 180.18888 * 8 6 5 11 11 C 1.53002 * 109.47328 * 198.35086 * 10 8 6 12 12 C 1.50701 * 115.54742 * 294.77677 * 11 10 8 13 13 H 1.07997 * 120.00225 * 145.24142 * 12 11 10 14 14 C 1.37880 * 119.99898 * 325.24428 * 12 11 10 15 15 N 1.31509 * 119.99949 * 343.49391 * 14 12 11 16 16 Si 1.86809 * 119.99913 * 163.49411 * 14 12 11 17 17 H 1.48501 * 109.47037 * 59.99655 * 16 14 12 18 18 H 1.48493 * 109.47252 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46814 * 300.00203 * 16 14 12 20 20 C 1.52996 * 117.50210 * 149.10847 * 11 10 8 21 21 C 1.52995 * 117.49881 * 80.44314 * 11 10 8 22 22 C 1.53783 * 87.08215 * 334.52622 * 6 5 3 23 23 C 1.52999 * 113.61517 * 139.98137 * 22 6 5 24 24 C 1.52999 * 113.61422 * 270.79975 * 22 6 5 25 25 H 1.08997 * 109.46945 * 300.00061 * 1 2 3 26 26 H 1.08996 * 109.46689 * 60.00264 * 1 2 3 27 27 H 1.08998 * 109.46874 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47033 * 171.74583 * 4 3 2 29 29 H 1.08995 * 109.46879 * 291.75021 * 4 3 2 30 30 H 1.09002 * 109.47047 * 51.74395 * 4 3 2 31 31 H 1.08996 * 113.61364 * 25.43732 * 5 3 2 32 32 H 1.09006 * 113.61784 * 254.61452 * 5 3 2 33 33 H 1.08997 * 109.47439 * 49.32537 * 9 8 6 34 34 H 1.08995 * 109.46987 * 169.33488 * 9 8 6 35 35 H 1.09006 * 109.46499 * 289.33223 * 9 8 6 36 36 H 1.09000 * 109.47609 * 318.34634 * 10 8 6 37 37 H 1.09001 * 109.47120 * 78.34886 * 10 8 6 38 38 H 0.97006 * 119.99855 * 185.04957 * 15 14 12 39 39 H 1.08997 * 117.49815 * 359.97438 * 20 11 10 40 40 H 1.09001 * 117.50089 * 145.02288 * 20 11 10 41 41 H 1.09000 * 117.49886 * 214.98132 * 21 11 10 42 42 H 1.09000 * 117.50151 * 359.97438 * 21 11 10 43 43 H 1.08999 * 109.47150 * 59.99932 * 23 22 6 44 44 H 1.08997 * 109.46876 * 180.02562 * 23 22 6 45 45 H 1.09000 * 109.47032 * 300.00069 * 23 22 6 46 46 H 1.09003 * 109.46854 * 63.27867 * 24 22 6 47 47 H 1.08992 * 109.46898 * 183.27368 * 24 22 6 48 48 H 1.08996 * 109.47432 * 303.27674 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4554 2.2045 -1.1068 5 6 2.0263 1.9726 1.3854 6 6 3.4290 2.4954 1.0333 7 1 3.4209 3.4605 0.5268 8 7 4.3737 2.4490 2.1573 9 6 3.8490 3.1831 3.3165 10 6 5.6906 2.9642 1.7599 11 6 6.7462 2.4941 2.7627 12 6 6.5995 3.0344 4.1619 13 1 6.8628 2.4185 5.0090 14 6 6.1292 4.3152 4.3605 15 7 6.1154 5.1726 3.3635 16 14 5.5114 4.8325 6.0459 17 1 6.6073 4.6947 7.0385 18 1 5.0641 6.2476 5.9963 19 1 4.3723 3.9663 6.4428 20 6 8.1653 2.2646 2.2393 21 6 7.2826 1.0696 2.6082 22 6 3.5489 1.2981 0.0756 23 6 4.2295 1.6404 -1.2512 24 6 4.1261 0.0429 0.7329 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8227 3.2211 -0.9674 29 1 1.7818 1.8299 -2.0769 30 1 0.3662 2.2026 -1.0645 31 1 2.0199 1.2624 2.2122 32 1 1.2823 2.7612 1.4991 33 1 2.8261 2.8641 3.5161 34 1 4.4704 2.9778 4.1882 35 1 3.8614 4.2525 3.1052 36 1 5.9419 2.5919 0.7667 37 1 5.6647 4.0538 1.7436 38 1 5.8539 6.0937 3.5194 39 1 8.3470 2.4481 1.1803 40 1 8.9930 2.5039 2.9070 41 1 7.5298 0.5234 3.5185 42 1 6.8832 0.4672 1.7923 43 1 5.2385 2.0051 -1.0586 44 1 4.2783 0.7481 -1.8753 45 1 3.6563 2.4119 -1.7652 46 1 3.4531 -0.2972 1.5201 47 1 4.2354 -0.7417 -0.0157 48 1 5.1009 0.2733 1.1628 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602786508.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:22 Heat of formation + Delta-G solvation = 19.938738 kcal Electronic energy + Delta-G solvation = -24805.867671 eV Core-core repulsion = 21670.324076 eV Total energy + Delta-G solvation = -3135.543596 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.50962 -37.35467 -36.06684 -33.67972 -32.16934 -30.53402 -29.01180 -26.94308 -26.27843 -26.18043 -25.70417 -23.58698 -21.66867 -21.03568 -20.52105 -18.90743 -17.43790 -16.27359 -15.93286 -15.52671 -15.17960 -14.77139 -14.57777 -14.03952 -13.79966 -13.58500 -13.49037 -12.93887 -12.63430 -12.40709 -12.26924 -11.89627 -11.74371 -11.62958 -11.53201 -11.48629 -11.41199 -11.24978 -10.87061 -10.76173 -10.48010 -10.38498 -10.28934 -10.10289 -9.98499 -9.78085 -9.67510 -9.17682 -9.07934 -8.89364 -8.55506 -7.98382 -7.06863 -6.01871 -3.98998 3.24935 3.30966 3.35207 3.89278 4.33143 4.64991 4.80920 4.88363 4.97080 5.06483 5.20088 5.34601 5.43829 5.51187 5.60046 5.62710 5.67398 5.75935 5.79899 5.91493 6.00320 6.04339 6.07620 6.16966 6.26061 6.31335 6.39511 6.43255 6.57415 6.60396 6.62770 6.78999 6.82606 6.84160 6.87620 6.99819 7.06193 7.18712 7.33575 7.44506 7.46167 7.49478 7.58857 7.98602 8.32694 8.37866 8.53606 8.91581 9.49535 10.93697 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.020690 B = 0.006054 C = 0.005336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.980033 B = 4624.110905 C = 5246.117209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.088 3.912 4 C -0.159 4.159 5 C -0.147 4.147 6 C 0.068 3.932 7 H 0.054 0.946 8 N -0.505 5.505 9 C 0.019 3.981 10 C 0.086 3.914 11 C 0.067 3.933 12 C -0.482 4.482 13 H 0.059 0.941 14 C 0.079 3.921 15 N -0.875 5.875 16 Si 0.875 3.125 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.270 1.270 20 C -0.208 4.208 21 C -0.201 4.201 22 C -0.046 4.046 23 C -0.142 4.142 24 C -0.105 4.105 25 H 0.038 0.962 26 H 0.039 0.961 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.057 0.943 33 H 0.027 0.973 34 H 0.107 0.893 35 H 0.024 0.976 36 H 0.030 0.970 37 H 0.089 0.911 38 H 0.261 0.739 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.038 0.962 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.466 -5.106 -7.885 13.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.284 6.284 3 C 0.048 3.952 4 C -0.216 4.216 5 C -0.185 4.185 6 C -0.042 4.042 7 H 0.071 0.929 8 N -0.229 5.229 9 C -0.128 4.128 10 C -0.041 4.041 11 C 0.066 3.934 12 C -0.519 4.519 13 H 0.077 0.923 14 C -0.123 4.123 15 N -0.513 5.513 16 Si 0.702 3.298 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.196 1.196 20 C -0.247 4.247 21 C -0.238 4.238 22 C -0.047 4.047 23 C -0.200 4.200 24 C -0.162 4.162 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.125 0.875 35 H 0.042 0.958 36 H 0.048 0.952 37 H 0.107 0.893 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.057 0.943 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.415 -5.561 -7.801 13.433 hybrid contribution -0.638 1.477 0.611 1.721 sum -10.053 -4.084 -7.190 13.017 Atomic orbital electron populations 1.22665 0.82497 1.01953 0.99717 1.87981 1.18518 1.27161 1.94737 1.23058 0.94640 0.83066 0.94420 1.22098 1.00764 1.00017 0.98765 1.23590 0.97072 1.00157 0.97646 1.22869 0.92528 0.95249 0.93555 0.92880 1.62036 1.01816 1.55318 1.03684 1.22850 0.97933 0.95543 0.96475 1.21830 0.86828 1.01466 0.94011 1.18807 0.88713 0.91126 0.94764 1.20452 1.42464 0.98519 0.90464 0.92314 1.24909 0.94963 0.96267 0.96179 1.69853 1.47308 1.03373 1.30732 0.86972 0.79973 0.77659 0.85166 1.20253 1.21234 1.19576 1.22955 0.98049 1.05184 0.98485 1.22810 1.07517 0.92660 1.00826 1.21985 0.90640 0.97099 0.94948 1.21886 1.00861 1.00944 0.96268 1.21269 1.02142 0.93670 0.99132 0.94338 0.94282 0.90266 0.91098 0.91504 0.92332 0.88640 0.92382 0.95447 0.87533 0.95765 0.95167 0.89326 0.92865 0.92140 0.90790 0.91251 0.91230 0.92019 0.92865 0.92658 0.92454 0.94272 0.90613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.41 101.05 1.05 1.37 16 2 O -0.37 -5.33 9.70 -35.23 -0.34 -5.67 16 3 C 0.09 1.26 1.17 -89.66 -0.10 1.16 16 4 C -0.16 -1.91 7.39 37.16 0.27 -1.64 16 5 C -0.15 -2.32 5.24 -25.92 -0.14 -2.45 16 6 C 0.07 1.19 2.25 -66.90 -0.15 1.04 16 7 H 0.05 0.98 7.58 -51.93 -0.39 0.58 16 8 N -0.51 -10.49 3.52 -233.91 -0.82 -11.32 16 9 C 0.02 0.43 7.65 60.07 0.46 0.89 16 10 C 0.09 1.95 4.42 -3.83 -0.02 1.93 16 11 C 0.07 1.61 1.98 -155.66 -0.31 1.31 16 12 C -0.48 -12.60 7.17 -34.44 -0.25 -12.85 16 13 H 0.06 1.57 7.87 -52.49 -0.41 1.16 16 14 C 0.08 2.03 2.93 -17.82 -0.05 1.98 16 15 N -0.88 -23.07 9.88 55.43 0.55 -22.52 16 16 Si 0.88 20.14 28.35 -169.99 -4.82 15.32 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 C -0.21 -4.76 9.93 -26.69 -0.26 -5.03 16 21 C -0.20 -4.43 9.91 -26.69 -0.26 -4.69 16 22 C -0.05 -0.73 1.06 -153.55 -0.16 -0.89 16 23 C -0.14 -2.06 8.66 37.16 0.32 -1.74 16 24 C -0.11 -1.78 8.01 37.16 0.30 -1.48 16 25 H 0.04 0.41 8.01 -51.93 -0.42 0.00 16 26 H 0.04 0.38 6.43 -51.93 -0.33 0.05 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.85 7.13 -51.93 -0.37 0.48 16 29 H 0.07 0.76 7.25 -51.93 -0.38 0.38 16 30 H 0.06 0.62 6.36 -51.93 -0.33 0.29 16 31 H 0.10 1.63 7.49 -51.93 -0.39 1.24 16 32 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.03 0.54 6.70 -51.93 -0.35 0.19 16 34 H 0.11 2.59 3.68 -51.93 -0.19 2.39 16 35 H 0.02 0.56 6.83 -51.93 -0.35 0.21 16 36 H 0.03 0.66 6.36 -51.93 -0.33 0.33 16 37 H 0.09 2.27 5.30 -51.93 -0.28 1.99 16 38 H 0.26 6.68 8.32 -40.82 -0.34 6.34 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 41 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 42 H 0.07 1.44 6.29 -51.93 -0.33 1.11 16 43 H 0.06 0.96 6.81 -51.93 -0.35 0.60 16 44 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 45 H 0.05 0.72 5.96 -51.93 -0.31 0.41 16 46 H 0.06 1.01 7.13 -51.93 -0.37 0.64 16 47 H 0.04 0.61 8.11 -51.93 -0.42 0.19 16 48 H 0.08 1.42 5.48 -51.93 -0.28 1.13 16 LS Contribution 344.82 15.07 5.20 5.20 Total: -1.00 -26.17 344.82 -7.80 -33.97 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -8.26 Total: 6.12 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: 0.70 Total: -21.10 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: -0.28 Total: -33.84 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.34 Total: -5.67 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.82 Total: 15.32 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -26.17 -7.80 -33.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602786508.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.913 kcal (2) G-P(sol) polarization free energy of solvation -26.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds