Wall clock time and date at job start Tue Mar 31 2020 05:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00096 * 2 1 4 4 C 1.53007 * 112.90814 * 308.25264 * 3 2 1 5 5 C 1.53780 * 113.61514 * 79.50228 * 3 2 1 6 6 C 1.53781 * 87.17320 * 140.02588 * 5 3 2 7 7 H 1.09003 * 113.61527 * 89.07714 * 6 5 3 8 8 N 1.46904 * 113.61608 * 219.89326 * 6 5 3 9 9 C 1.46902 * 110.99958 * 304.14759 * 8 6 5 10 10 C 1.46890 * 111.00141 * 180.18888 * 8 6 5 11 11 C 1.53002 * 109.47328 * 198.35086 * 10 8 6 12 12 C 1.50701 * 115.54742 * 294.77677 * 11 10 8 13 13 H 1.07997 * 120.00225 * 145.24142 * 12 11 10 14 14 C 1.37880 * 119.99898 * 325.24428 * 12 11 10 15 15 N 1.31509 * 119.99949 * 343.49391 * 14 12 11 16 16 Si 1.86809 * 119.99913 * 163.49411 * 14 12 11 17 17 H 1.48501 * 109.47037 * 59.99655 * 16 14 12 18 18 H 1.48493 * 109.47252 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46814 * 300.00203 * 16 14 12 20 20 C 1.52996 * 117.50210 * 149.10847 * 11 10 8 21 21 C 1.52995 * 117.49881 * 80.44314 * 11 10 8 22 22 C 1.53783 * 87.08215 * 334.52622 * 6 5 3 23 23 C 1.52999 * 113.61517 * 139.98137 * 22 6 5 24 24 C 1.52999 * 113.61422 * 270.79975 * 22 6 5 25 25 H 1.08997 * 109.46945 * 300.00061 * 1 2 3 26 26 H 1.08996 * 109.46689 * 60.00264 * 1 2 3 27 27 H 1.08998 * 109.46874 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47033 * 171.74583 * 4 3 2 29 29 H 1.08995 * 109.46879 * 291.75021 * 4 3 2 30 30 H 1.09002 * 109.47047 * 51.74395 * 4 3 2 31 31 H 1.08996 * 113.61364 * 25.43732 * 5 3 2 32 32 H 1.09006 * 113.61784 * 254.61452 * 5 3 2 33 33 H 1.08997 * 109.47439 * 49.32537 * 9 8 6 34 34 H 1.08995 * 109.46987 * 169.33488 * 9 8 6 35 35 H 1.09006 * 109.46499 * 289.33223 * 9 8 6 36 36 H 1.09000 * 109.47609 * 318.34634 * 10 8 6 37 37 H 1.09001 * 109.47120 * 78.34886 * 10 8 6 38 38 H 0.97006 * 119.99855 * 185.04957 * 15 14 12 39 39 H 1.08997 * 117.49815 * 359.97438 * 20 11 10 40 40 H 1.09001 * 117.50089 * 145.02288 * 20 11 10 41 41 H 1.09000 * 117.49886 * 214.98132 * 21 11 10 42 42 H 1.09000 * 117.50151 * 359.97438 * 21 11 10 43 43 H 1.08999 * 109.47150 * 59.99932 * 23 22 6 44 44 H 1.08997 * 109.46876 * 180.02562 * 23 22 6 45 45 H 1.09000 * 109.47032 * 300.00069 * 23 22 6 46 46 H 1.09003 * 109.46854 * 63.27867 * 24 22 6 47 47 H 1.08992 * 109.46898 * 183.27368 * 24 22 6 48 48 H 1.08996 * 109.47432 * 303.27674 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4554 2.2045 -1.1068 5 6 2.0263 1.9726 1.3854 6 6 3.4290 2.4954 1.0333 7 1 3.4209 3.4605 0.5268 8 7 4.3737 2.4490 2.1573 9 6 3.8490 3.1831 3.3165 10 6 5.6906 2.9642 1.7599 11 6 6.7462 2.4941 2.7627 12 6 6.5995 3.0344 4.1619 13 1 6.8628 2.4185 5.0090 14 6 6.1292 4.3152 4.3605 15 7 6.1154 5.1726 3.3635 16 14 5.5114 4.8325 6.0459 17 1 6.6073 4.6947 7.0385 18 1 5.0641 6.2476 5.9963 19 1 4.3723 3.9663 6.4428 20 6 8.1653 2.2646 2.2393 21 6 7.2826 1.0696 2.6082 22 6 3.5489 1.2981 0.0756 23 6 4.2295 1.6404 -1.2512 24 6 4.1261 0.0429 0.7329 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8227 3.2211 -0.9674 29 1 1.7818 1.8299 -2.0769 30 1 0.3662 2.2026 -1.0645 31 1 2.0199 1.2624 2.2122 32 1 1.2823 2.7612 1.4991 33 1 2.8261 2.8641 3.5161 34 1 4.4704 2.9778 4.1882 35 1 3.8614 4.2525 3.1052 36 1 5.9419 2.5919 0.7667 37 1 5.6647 4.0538 1.7436 38 1 5.8539 6.0937 3.5194 39 1 8.3470 2.4481 1.1803 40 1 8.9930 2.5039 2.9070 41 1 7.5298 0.5234 3.5185 42 1 6.8832 0.4672 1.7923 43 1 5.2385 2.0051 -1.0586 44 1 4.2783 0.7481 -1.8753 45 1 3.6563 2.4119 -1.7652 46 1 3.4531 -0.2972 1.5201 47 1 4.2354 -0.7417 -0.0157 48 1 5.1009 0.2733 1.1628 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602786508.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:21 Heat of formation + Delta-G solvation = 6.389363 kcal Electronic energy + Delta-G solvation = -24806.455216 eV Core-core repulsion = 21670.324076 eV Total energy + Delta-G solvation = -3136.131141 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.76439 -38.99345 -37.38918 -35.30253 -34.09034 -31.75019 -30.15968 -28.07687 -27.93029 -27.56992 -27.42308 -25.13273 -22.96856 -22.76042 -21.97288 -20.80137 -18.70589 -18.02190 -17.35921 -16.78871 -16.53189 -16.27826 -16.01874 -15.48534 -15.36408 -15.12017 -14.58264 -14.47031 -14.14291 -14.00139 -13.47249 -13.32536 -13.19615 -13.06913 -12.95641 -12.87907 -12.79636 -12.63471 -12.45235 -12.31354 -12.17107 -11.90772 -11.87143 -11.81819 -11.50232 -11.15558 -11.10639 -10.78068 -10.72166 -10.40861 -10.26384 -9.87355 -8.80179 -7.98359 -6.01760 1.39058 1.43083 1.48405 2.41171 2.82341 3.01939 3.39910 3.58365 3.60999 3.76065 3.83764 3.94974 4.33552 4.40834 4.41124 4.48450 4.57267 4.61572 4.62630 4.68996 4.76782 4.77897 4.81018 4.88679 4.92474 4.93474 4.97304 5.01970 5.05210 5.08707 5.12396 5.14390 5.20626 5.24830 5.29004 5.38362 5.48176 5.59767 5.60458 5.63678 5.70390 5.78770 6.04854 6.42986 6.54070 6.57964 6.71562 6.93883 7.48610 8.94020 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.020690 B = 0.006054 C = 0.005336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.980033 B = 4624.110905 C = 5246.117209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.385 6.385 3 C 0.102 3.898 4 C -0.157 4.157 5 C -0.143 4.143 6 C 0.058 3.942 7 H 0.048 0.952 8 N -0.506 5.506 9 C 0.030 3.970 10 C 0.101 3.899 11 C 0.040 3.960 12 C -0.500 4.500 13 H 0.044 0.956 14 C 0.055 3.945 15 N -0.892 5.892 16 Si 0.919 3.081 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.264 1.264 20 C -0.209 4.209 21 C -0.182 4.182 22 C -0.050 4.050 23 C -0.139 4.139 24 C -0.098 4.098 25 H 0.039 0.961 26 H 0.056 0.944 27 H 0.094 0.906 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.083 0.917 35 H 0.005 0.995 36 H 0.037 0.963 37 H 0.060 0.940 38 H 0.260 0.740 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.046 0.954 44 H 0.065 0.935 45 H 0.070 0.930 46 H 0.044 0.956 47 H 0.050 0.950 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.098 -5.762 -9.133 15.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.304 6.304 3 C 0.062 3.938 4 C -0.214 4.214 5 C -0.181 4.181 6 C -0.051 4.051 7 H 0.066 0.934 8 N -0.229 5.229 9 C -0.118 4.118 10 C -0.026 4.026 11 C 0.040 3.960 12 C -0.537 4.537 13 H 0.062 0.938 14 C -0.146 4.146 15 N -0.529 5.529 16 Si 0.745 3.255 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.189 1.189 20 C -0.247 4.247 21 C -0.220 4.220 22 C -0.050 4.050 23 C -0.196 4.196 24 C -0.155 4.155 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.113 0.887 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.024 0.976 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.063 0.937 47 H 0.069 0.931 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.053 -6.229 -9.050 15.585 hybrid contribution -0.143 1.632 1.003 1.921 sum -11.196 -4.598 -8.046 14.534 Atomic orbital electron populations 1.22880 0.80588 1.03373 1.00562 1.87946 1.20600 1.27000 1.94830 1.22891 0.93397 0.83499 0.94041 1.22096 1.01903 0.99252 0.98151 1.23539 0.95962 1.00163 0.98465 1.22981 0.93078 0.95919 0.93105 0.93402 1.62004 1.01780 1.54518 1.04558 1.22641 0.98400 0.94535 0.96263 1.21535 0.87669 0.99529 0.93871 1.18964 0.89786 0.92782 0.94508 1.20557 1.43327 0.98785 0.91036 0.93816 1.25294 0.94693 0.96080 0.98509 1.69968 1.47664 1.03372 1.31926 0.86280 0.79578 0.77417 0.82225 1.20419 1.20969 1.18920 1.22943 0.97211 1.05622 0.98939 1.22764 1.06190 0.91922 1.01088 1.21987 0.92508 0.95531 0.95011 1.21858 1.00039 1.01978 0.95718 1.21157 1.00651 0.94583 0.99085 0.94244 0.92597 0.88724 0.91231 0.90423 0.90519 0.90120 0.91289 0.93673 0.89835 0.97596 0.94509 0.92173 0.93041 0.90914 0.91714 0.91478 0.89705 0.93506 0.91573 0.91127 0.93652 0.93069 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.41 113.37 1.18 1.60 16 2 O -0.38 -10.22 9.70 -148.98 -1.45 -11.66 16 3 C 0.10 2.68 1.17 -10.17 -0.01 2.66 16 4 C -0.16 -3.25 7.39 71.98 0.53 -2.72 16 5 C -0.14 -4.31 5.24 31.12 0.16 -4.14 16 6 C 0.06 2.01 2.25 45.44 0.10 2.11 16 7 H 0.05 1.72 7.58 -2.39 -0.02 1.71 16 8 N -0.51 -21.02 3.52 -893.95 -3.15 -24.17 16 9 C 0.03 1.31 7.65 127.69 0.98 2.28 16 10 C 0.10 4.66 4.42 86.31 0.38 5.04 16 11 C 0.04 1.97 1.98 -52.93 -0.10 1.87 16 12 C -0.50 -26.62 7.17 25.60 0.18 -26.43 16 13 H 0.04 2.39 7.87 -2.91 -0.02 2.37 16 14 C 0.06 2.87 2.93 84.66 0.25 3.12 16 15 N -0.89 -47.73 9.88 21.45 0.21 -47.52 16 16 Si 0.92 41.60 28.35 68.60 1.95 43.54 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 20 C -0.21 -9.54 9.93 30.62 0.30 -9.23 16 21 C -0.18 -7.99 9.91 30.62 0.30 -7.68 16 22 C -0.05 -1.50 1.06 -51.56 -0.05 -1.56 16 23 C -0.14 -3.73 8.66 71.98 0.62 -3.10 16 24 C -0.10 -3.20 8.01 71.98 0.58 -2.62 16 25 H 0.04 0.74 8.01 -2.39 -0.02 0.72 16 26 H 0.06 0.88 6.43 -2.39 -0.02 0.86 16 27 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.07 1.47 7.13 -2.39 -0.02 1.46 16 29 H 0.08 1.47 7.25 -2.39 -0.02 1.45 16 30 H 0.08 1.32 6.36 -2.39 -0.02 1.30 16 31 H 0.08 2.68 7.49 -2.39 -0.02 2.66 16 32 H 0.07 1.90 8.10 -2.38 -0.02 1.88 16 33 H 0.04 1.78 6.70 -2.39 -0.02 1.76 16 34 H 0.08 4.10 3.68 -2.39 -0.01 4.09 16 35 H 0.01 0.26 6.83 -2.38 -0.02 0.24 16 36 H 0.04 1.60 6.36 -2.39 -0.02 1.59 16 37 H 0.06 3.14 5.30 -2.39 -0.01 3.13 16 38 H 0.26 13.48 8.32 -92.70 -0.77 12.71 16 39 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 40 H 0.06 3.04 8.14 -2.39 -0.02 3.02 16 41 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 42 H 0.08 3.43 6.29 -2.39 -0.02 3.42 16 43 H 0.05 1.38 6.81 -2.39 -0.02 1.37 16 44 H 0.07 1.59 8.12 -2.39 -0.02 1.57 16 45 H 0.07 1.66 5.96 -2.39 -0.01 1.64 16 46 H 0.04 1.56 7.13 -2.39 -0.02 1.54 16 47 H 0.05 1.52 8.11 -2.39 -0.02 1.50 16 48 H 0.05 2.01 5.48 -2.39 -0.01 2.00 16 Total: -1.00 -55.80 344.82 3.89 -51.91 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 0.93 Total: 26.69 kcal Atomic # 6 Polarization: -44.20 SS G_CDS: 5.40 Total: -38.80 kcal Atomic # 7 Polarization: -68.75 SS G_CDS: -2.94 Total: -71.69 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -1.45 Total: -11.66 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 1.95 Total: 43.54 kcal Total: -55.80 3.89 -51.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602786508.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.301 kcal (2) G-P(sol) polarization free energy of solvation -55.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds