Wall clock time and date at job start Tue Mar 31 2020 05:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99788 * 2 1 4 4 C 1.53007 * 112.84975 * 51.68800 * 3 2 1 5 5 C 1.53787 * 113.61523 * 280.49274 * 3 2 1 6 6 C 1.53780 * 87.08250 * 270.80172 * 5 3 2 7 7 H 1.08999 * 113.61492 * 89.19290 * 6 5 3 8 8 N 1.46894 * 113.61724 * 220.01927 * 6 5 3 9 9 C 1.46904 * 110.99646 * 34.20120 * 8 6 5 10 10 C 1.46901 * 111.00382 * 158.15358 * 8 6 5 11 11 C 1.53003 * 109.46846 * 170.54062 * 10 8 6 12 12 C 1.50698 * 115.55192 * 306.29619 * 11 10 8 13 13 H 1.07996 * 119.99885 * 143.54082 * 12 11 10 14 14 C 1.37870 * 119.99980 * 323.53702 * 12 11 10 15 15 N 1.31515 * 120.00068 * 168.01143 * 14 12 11 16 16 Si 1.86800 * 120.00258 * 348.01064 * 14 12 11 17 17 H 1.48502 * 109.47087 * 95.75900 * 16 14 12 18 18 H 1.48502 * 109.47544 * 215.75833 * 16 14 12 19 19 H 1.48500 * 109.47205 * 335.75993 * 16 14 12 20 20 C 1.53001 * 117.49242 * 160.62884 * 11 10 8 21 21 C 1.53001 * 117.49515 * 91.96912 * 11 10 8 22 22 C 1.53775 * 113.69331 * 182.96026 * 3 2 1 23 23 C 1.53007 * 113.61311 * 334.57756 * 22 3 2 24 24 C 1.52994 * 113.61752 * 203.67788 * 22 3 2 25 25 H 1.08997 * 109.46898 * 300.00522 * 1 2 3 26 26 H 1.09004 * 109.46633 * 60.00406 * 1 2 3 27 27 H 1.08995 * 109.46940 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47140 * 308.30762 * 4 3 2 29 29 H 1.08992 * 109.46918 * 68.31274 * 4 3 2 30 30 H 1.09002 * 109.46530 * 188.30865 * 4 3 2 31 31 H 1.08995 * 113.61314 * 156.25156 * 5 3 2 32 32 H 1.09000 * 113.68580 * 25.35702 * 5 3 2 33 33 H 1.09002 * 109.46916 * 194.48048 * 9 8 6 34 34 H 1.09001 * 109.47496 * 314.47311 * 9 8 6 35 35 H 1.08996 * 109.47230 * 74.47986 * 9 8 6 36 36 H 1.08992 * 109.46983 * 290.54274 * 10 8 6 37 37 H 1.09003 * 109.46633 * 50.54231 * 10 8 6 38 38 H 0.96997 * 120.00259 * 180.02562 * 15 14 12 39 39 H 1.09002 * 117.50065 * 359.97438 * 20 11 10 40 40 H 1.09004 * 117.49866 * 145.02568 * 20 11 10 41 41 H 1.08999 * 117.49480 * 214.97024 * 21 11 10 42 42 H 1.08996 * 117.50125 * 359.97438 * 21 11 10 43 43 H 1.08998 * 109.47273 * 157.50074 * 23 22 3 44 44 H 1.09005 * 109.46989 * 277.50021 * 23 22 3 45 45 H 1.09003 * 109.46881 * 37.49156 * 23 22 3 46 46 H 1.09006 * 109.46973 * 324.40938 * 24 22 3 47 47 H 1.09000 * 109.47697 * 84.41503 * 24 22 3 48 48 H 1.09004 * 109.47187 * 204.41398 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4533 2.2038 1.1063 5 6 2.0264 1.9726 -1.3855 6 6 3.3956 1.3072 -1.6031 7 1 3.3323 0.3119 -2.0429 8 7 4.3682 2.1715 -2.2850 9 6 4.1818 3.5776 -1.9026 10 6 5.7435 1.7306 -2.0163 11 6 6.7106 2.4972 -2.9208 12 6 6.4024 2.4439 -4.3950 13 1 6.5777 3.3106 -5.0149 14 6 5.8967 1.2887 -4.9522 15 7 5.4083 1.3066 -6.1732 16 14 5.9051 -0.3021 -3.9730 17 1 4.5873 -0.4842 -3.3130 18 1 6.1633 -1.4443 -4.8862 19 1 6.9714 -0.2426 -2.9411 20 6 8.1833 2.5362 -2.5079 21 6 7.3163 3.7905 -2.3720 22 6 3.5463 1.2981 -0.0727 23 6 4.1795 0.0166 0.4731 24 6 4.1925 2.5668 0.4871 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 0.3642 2.2005 1.0632 29 1 1.7797 1.8298 2.0767 30 1 1.8194 3.2210 0.9671 31 1 2.0712 3.0609 -1.3455 32 1 1.2507 1.6053 -2.0575 33 1 4.7254 4.2181 -2.5971 34 1 3.1208 3.8253 -1.9345 35 1 4.5610 3.7327 -0.8925 36 1 5.9901 1.9256 -0.9727 37 1 5.8282 0.6625 -2.2163 38 1 5.0522 0.4939 -6.5651 39 1 8.4631 2.0162 -1.5917 40 1 8.9293 2.5239 -3.3025 41 1 7.4923 4.6027 -3.0773 42 1 7.0255 4.0955 -1.3667 43 1 5.1754 -0.1065 0.0474 44 1 4.2538 0.0818 1.5586 45 1 3.5602 -0.8386 0.2021 46 1 3.5648 3.4272 0.2549 47 1 4.2973 2.4746 1.5682 48 1 5.1760 2.7026 0.0371 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602786509.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:24 Heat of formation + Delta-G solvation = 66.884002 kcal Electronic energy + Delta-G solvation = -25159.681560 eV Core-core repulsion = 22026.173664 eV Total energy + Delta-G solvation = -3133.507896 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.24239 -37.81931 -36.30772 -33.40442 -31.97370 -30.77138 -29.66294 -28.22718 -26.83720 -26.36053 -25.42533 -23.92870 -21.84418 -21.28271 -20.39460 -18.94323 -18.32185 -16.40823 -15.97019 -15.83000 -15.73162 -15.40117 -14.81039 -14.42802 -13.99487 -13.62902 -13.36192 -13.24163 -12.85684 -12.69308 -12.53244 -12.33643 -12.28239 -12.06062 -11.74838 -11.51574 -11.36086 -11.18337 -11.04299 -10.68548 -10.62274 -10.53987 -10.48054 -10.28449 -10.05177 -9.82856 -9.50829 -9.34269 -9.23757 -9.04002 -8.49990 -8.14533 -7.13636 -5.94779 -3.85520 3.43210 3.47835 3.52056 3.61543 4.43045 4.52908 4.58505 4.68771 4.93645 4.98040 5.10795 5.21887 5.28859 5.33849 5.35782 5.44751 5.51607 5.56170 5.59889 5.66817 5.74095 5.77186 5.86246 5.89415 5.94824 5.98199 6.04340 6.09006 6.14156 6.18402 6.21801 6.29928 6.41220 6.46155 6.55839 6.60261 6.65336 6.71142 6.80720 6.86124 7.07762 7.22494 7.29415 7.83098 7.94445 8.03733 8.67440 9.07950 9.74329 11.18261 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019802 B = 0.007126 C = 0.006299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.630121 B = 3928.068744 C = 4444.083138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.096 3.904 4 C -0.165 4.165 5 C -0.166 4.166 6 C 0.078 3.922 7 H 0.106 0.894 8 N -0.494 5.494 9 C -0.008 4.008 10 C 0.078 3.922 11 C 0.022 3.978 12 C -0.466 4.466 13 H 0.070 0.930 14 C 0.096 3.904 15 N -0.895 5.895 16 Si 0.890 3.110 17 H -0.271 1.271 18 H -0.309 1.309 19 H -0.270 1.270 20 C -0.214 4.214 21 C -0.193 4.193 22 C -0.101 4.101 23 C -0.132 4.132 24 C -0.144 4.144 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.047 0.953 36 H 0.026 0.974 37 H 0.066 0.934 38 H 0.261 0.739 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.053 0.947 44 H 0.048 0.952 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.050 0.950 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.141 0.664 15.484 17.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.056 3.944 4 C -0.222 4.222 5 C -0.203 4.203 6 C -0.032 4.032 7 H 0.124 0.876 8 N -0.214 5.214 9 C -0.155 4.155 10 C -0.048 4.048 11 C 0.021 3.979 12 C -0.502 4.502 13 H 0.089 0.911 14 C -0.107 4.107 15 N -0.532 5.532 16 Si 0.723 3.277 17 H -0.198 1.198 18 H -0.238 1.238 19 H -0.197 1.197 20 C -0.253 4.253 21 C -0.230 4.230 22 C -0.103 4.103 23 C -0.189 4.189 24 C -0.200 4.200 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.101 0.899 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.044 0.956 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.069 0.931 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.208 0.365 14.787 16.916 hybrid contribution -0.138 -0.698 1.295 1.478 sum -8.346 -0.333 16.082 18.122 Atomic orbital electron populations 1.22726 0.81751 1.02322 1.00021 1.87910 1.19099 1.26093 1.94741 1.22472 0.94190 0.83409 0.94359 1.22200 1.00950 1.00174 0.98908 1.23994 0.98363 1.01459 0.96505 1.23388 0.92076 0.98327 0.89381 0.87638 1.61706 1.02438 1.01448 1.55839 1.23321 1.01093 0.90592 1.00541 1.22140 0.87971 0.99182 0.95492 1.19325 0.88552 0.94299 0.95747 1.20088 1.41932 0.99602 0.88617 0.91146 1.24750 0.92991 0.98610 0.94354 1.69934 1.39451 1.28113 1.15710 0.86992 0.78704 0.83144 0.78856 1.19774 1.23813 1.19712 1.23160 0.98250 1.02533 1.01314 1.22795 1.07944 0.92474 0.99798 1.22716 0.91989 0.96433 0.99209 1.21611 1.00429 0.97038 0.99803 1.22430 1.01684 0.95900 1.00025 0.94004 0.93962 0.89915 0.92397 0.92076 0.91035 0.87883 0.91006 0.90732 0.92125 0.93482 0.95582 0.91691 0.92925 0.91845 0.89767 0.90185 0.91549 0.92835 0.93278 0.91491 0.91196 0.93143 0.89930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.41 101.05 1.05 1.35 16 2 O -0.36 -5.11 9.12 -35.23 -0.32 -5.44 16 3 C 0.10 1.29 1.05 -89.80 -0.09 1.20 16 4 C -0.16 -1.78 8.16 37.16 0.30 -1.48 16 5 C -0.17 -2.48 6.25 -25.92 -0.16 -2.64 16 6 C 0.08 1.40 3.54 -66.90 -0.24 1.17 16 7 H 0.11 2.19 6.48 -51.93 -0.34 1.86 16 8 N -0.49 -10.02 4.17 -233.91 -0.98 -11.00 16 9 C -0.01 -0.15 7.26 60.07 0.44 0.29 16 10 C 0.08 1.67 2.84 -3.82 -0.01 1.66 16 11 C 0.02 0.52 0.82 -155.66 -0.13 0.39 16 12 C -0.47 -13.07 9.24 -34.44 -0.32 -13.38 16 13 H 0.07 2.17 8.06 -52.49 -0.42 1.74 16 14 C 0.10 2.77 5.35 -17.82 -0.10 2.68 16 15 N -0.89 -27.58 13.96 55.43 0.77 -26.81 16 16 Si 0.89 22.70 23.94 -169.99 -4.07 18.63 16 17 H -0.27 -6.67 5.36 56.52 0.30 -6.37 16 18 H -0.31 -8.07 7.11 56.52 0.40 -7.67 16 19 H -0.27 -6.65 6.38 56.52 0.36 -6.29 16 20 C -0.21 -4.57 9.96 -26.69 -0.27 -4.84 16 21 C -0.19 -3.91 8.66 -26.69 -0.23 -4.14 16 22 C -0.10 -1.51 0.74 -153.70 -0.11 -1.62 16 23 C -0.13 -1.98 9.04 37.16 0.34 -1.64 16 24 C -0.14 -1.92 5.91 37.15 0.22 -1.70 16 25 H 0.04 0.38 6.42 -51.93 -0.33 0.05 16 26 H 0.04 0.44 7.61 -51.93 -0.40 0.05 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.55 6.35 -51.93 -0.33 0.22 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.72 6.37 -51.93 -0.33 0.39 16 31 H 0.10 1.43 4.64 -51.93 -0.24 1.19 16 32 H 0.07 1.09 7.69 -51.93 -0.40 0.69 16 33 H 0.07 1.46 6.95 -51.93 -0.36 1.10 16 34 H 0.06 0.95 5.05 -51.93 -0.26 0.68 16 35 H 0.05 0.72 3.50 -51.93 -0.18 0.54 16 36 H 0.03 0.51 5.07 -51.93 -0.26 0.25 16 37 H 0.07 1.51 2.65 -51.93 -0.14 1.37 16 38 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.08 1.84 8.14 -51.93 -0.42 1.41 16 41 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.05 0.85 7.79 -51.93 -0.40 0.45 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 1.05 6.97 -51.93 -0.36 0.68 16 46 H 0.07 0.85 4.32 -51.93 -0.22 0.63 16 47 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 48 H 0.08 1.24 3.71 -51.93 -0.19 1.04 16 LS Contribution 332.30 15.07 5.01 5.01 Total: -1.00 -30.50 332.30 -6.73 -37.23 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -7.83 Total: 5.09 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: 0.69 Total: -22.72 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: -0.20 Total: -37.81 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -0.32 Total: -5.44 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.07 Total: 18.63 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.50 -6.73 -37.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602786509.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.116 kcal (2) G-P(sol) polarization free energy of solvation -30.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds