Wall clock time and date at job start Tue Mar 31 2020 05:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 119.99979 * 2 1 4 4 H 1.48499 * 109.47282 * 269.99812 * 3 2 1 5 5 H 1.48498 * 109.47125 * 30.00358 * 3 2 1 6 6 H 1.48503 * 109.47057 * 149.99964 * 3 2 1 7 7 C 1.37874 * 120.00331 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00257 * 181.75362 * 7 2 1 9 9 C 1.50707 * 119.99692 * 1.75221 * 7 2 1 10 10 C 1.52995 * 115.54764 * 84.61814 * 9 7 2 11 11 N 1.46900 * 109.47633 * 34.18501 * 10 9 7 12 12 C 1.46895 * 111.00389 * 185.19804 * 11 10 9 13 13 H 1.08998 * 109.47319 * 327.02494 * 12 11 10 14 14 C 1.53005 * 109.47030 * 87.02354 * 12 11 10 15 15 C 1.52996 * 109.47019 * 59.62414 * 14 12 11 16 16 O 1.42899 * 109.47105 * 184.89572 * 15 14 12 17 17 C 1.52999 * 109.47543 * 207.02153 * 12 11 10 18 18 C 1.52994 * 109.47126 * 180.02562 * 17 12 11 19 19 C 1.53008 * 109.46868 * 180.02562 * 18 17 12 20 20 C 1.52996 * 109.47223 * 59.99717 * 19 18 17 21 21 C 1.53000 * 109.47275 * 300.00412 * 20 19 18 22 22 C 1.52993 * 109.47293 * 59.99948 * 21 20 19 23 23 C 1.52998 * 117.51720 * 230.31688 * 9 7 2 24 24 C 1.53002 * 117.49810 * 298.94774 * 9 7 2 25 25 H 0.97002 * 119.99896 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46994 * 154.18426 * 10 9 7 27 27 H 1.08994 * 109.47385 * 274.17942 * 10 9 7 28 28 H 1.00904 * 110.99678 * 61.24252 * 11 10 9 29 29 H 1.09000 * 109.47395 * 179.62716 * 14 12 11 30 30 H 1.09003 * 109.46826 * 299.62899 * 14 12 11 31 31 H 1.09000 * 109.47820 * 304.89978 * 15 14 12 32 32 H 1.09004 * 109.47196 * 64.90313 * 15 14 12 33 33 H 0.96701 * 114.00423 * 179.97438 * 16 15 14 34 34 H 1.08998 * 109.47091 * 300.00481 * 17 12 11 35 35 H 1.09005 * 109.47307 * 299.99795 * 18 17 12 36 36 H 1.08990 * 109.47234 * 60.00614 * 18 17 12 37 37 H 1.09005 * 109.46735 * 299.99834 * 19 18 17 38 38 H 1.09003 * 109.46829 * 180.02562 * 19 18 17 39 39 H 1.08995 * 109.47087 * 179.97438 * 20 19 18 40 40 H 1.09005 * 109.47169 * 60.00383 * 20 19 18 41 41 H 1.08996 * 109.46634 * 299.99569 * 21 20 19 42 42 H 1.09003 * 109.47026 * 179.97438 * 21 20 19 43 43 H 1.09000 * 109.47384 * 180.02562 * 22 21 20 44 44 H 1.08998 * 109.47226 * 59.99811 * 22 21 20 45 45 H 1.08995 * 117.50238 * 214.96893 * 23 9 7 46 46 H 1.09001 * 117.49842 * 359.97438 * 23 9 7 47 47 H 1.08999 * 117.49633 * 359.97438 * 24 9 7 48 48 H 1.08999 * 117.49735 * 144.97556 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0841 -1.1942 0.0281 9 6 1.2515 -2.4988 -0.0410 10 6 0.8461 -2.9837 -1.4343 11 7 1.8784 -2.5994 -2.4062 12 6 1.4662 -2.9397 -3.7745 13 1 0.8602 -3.8455 -3.7567 14 6 0.6460 -1.7889 -4.3611 15 6 1.4935 -0.5152 -4.3774 16 8 0.6933 0.5837 -4.8181 17 6 2.7074 -3.1733 -4.6380 18 6 2.2779 -3.5270 -6.0632 19 6 3.5192 -3.7613 -6.9266 20 6 4.3385 -4.9126 -6.3401 21 6 4.7679 -4.5588 -4.9149 22 6 3.5267 -4.3247 -4.0516 23 6 1.6208 -3.5606 0.9968 24 6 0.2983 -2.8006 1.1171 25 1 -0.4850 0.8401 0.0004 26 1 0.7416 -4.0687 -1.4253 27 1 -0.1041 -2.5296 -1.7149 28 1 2.7649 -3.0246 -2.1793 29 1 0.3457 -2.0385 -5.3787 30 1 -0.2417 -1.6268 -3.7496 31 1 1.8661 -0.3136 -3.3731 32 1 2.3351 -0.6474 -5.0574 33 1 1.1669 1.4262 -4.8527 34 1 3.3133 -2.2674 -4.6558 35 1 1.6717 -4.4328 -6.0458 36 1 1.6940 -2.7070 -6.4808 37 1 4.1257 -2.8557 -6.9440 38 1 3.2132 -4.0129 -7.9421 39 1 5.2225 -5.0797 -6.9554 40 1 3.7320 -5.8181 -6.3227 41 1 5.3744 -3.6533 -4.9324 42 1 5.3512 -5.3793 -4.4969 43 1 3.8326 -4.0722 -3.0363 44 1 2.9202 -5.2301 -4.0341 45 1 1.5750 -4.6046 0.6870 46 1 2.4089 -3.3157 1.7089 47 1 0.2162 -2.0556 1.9085 48 1 -0.6177 -3.3444 0.8864 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602806081.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:59 Heat of formation + Delta-G solvation = -53.087954 kcal Electronic energy + Delta-G solvation = -23973.144201 eV Core-core repulsion = 20834.433930 eV Total energy + Delta-G solvation = -3138.710271 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.33438 -36.91764 -36.32119 -34.82263 -31.73763 -31.37998 -30.50841 -29.37680 -25.78488 -24.85874 -23.65589 -22.32310 -22.10870 -21.00287 -19.89246 -19.11465 -18.71818 -16.85605 -16.29380 -15.62140 -14.95581 -14.54923 -14.39013 -14.20397 -14.02058 -13.82698 -13.50799 -13.30773 -13.01511 -12.76649 -12.36628 -12.23803 -11.86200 -11.51279 -11.50066 -11.21684 -11.10406 -11.04001 -10.85684 -10.83100 -10.67390 -10.55375 -10.40033 -10.16368 -10.01755 -9.94440 -9.67158 -9.26854 -9.20568 -8.80137 -8.23004 -7.92905 -7.33435 -5.83220 -3.84374 3.38402 3.45502 3.47504 4.54974 4.64616 4.71664 4.79391 4.85647 4.94283 5.21007 5.33615 5.40779 5.44159 5.49517 5.51636 5.56032 5.56931 5.67637 5.75962 5.82022 5.94192 6.00905 6.07309 6.10558 6.16748 6.17033 6.24177 6.24958 6.28569 6.32359 6.39739 6.50952 6.57347 6.63052 6.70347 6.76171 6.82230 6.86005 7.06798 7.19786 7.50548 7.59452 8.05604 8.12404 8.16886 8.35683 8.64741 9.10935 9.77824 11.26974 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015639 B = 0.005972 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.931094 B = 4687.223684 C = 5499.306468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.076 3.924 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.461 4.461 8 H 0.054 0.946 9 C 0.048 3.952 10 C 0.110 3.890 11 N -0.652 5.652 12 C 0.094 3.906 13 H 0.036 0.964 14 C -0.100 4.100 15 C 0.081 3.919 16 O -0.583 6.583 17 C -0.090 4.090 18 C -0.114 4.114 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.221 4.221 24 C -0.154 4.154 25 H 0.255 0.745 26 H -0.007 1.007 27 H 0.065 0.935 28 H 0.333 0.667 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.029 0.971 33 H 0.370 0.630 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.084 -7.313 -11.798 15.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.126 4.126 3 Si 0.713 3.287 4 H -0.209 1.209 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.499 4.499 8 H 0.072 0.928 9 C 0.047 3.953 10 C -0.019 4.019 11 N -0.284 5.284 12 C -0.017 4.017 13 H 0.054 0.946 14 C -0.138 4.138 15 C 0.004 3.996 16 O -0.387 6.387 17 C -0.108 4.108 18 C -0.152 4.152 19 C -0.155 4.155 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.258 4.258 24 C -0.192 4.192 25 H 0.065 0.935 26 H 0.011 0.989 27 H 0.084 0.916 28 H 0.153 0.847 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.047 0.953 33 H 0.216 0.784 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.093 0.907 47 H 0.100 0.900 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.249 -7.019 -11.859 14.746 hybrid contribution 0.863 0.377 0.094 0.947 sum 6.113 -6.642 -11.765 14.829 Atomic orbital electron populations 1.69979 1.05695 1.25820 1.50358 1.24804 0.94580 0.98219 0.94976 0.86751 0.79748 0.84389 0.77825 1.20884 1.21786 1.20371 1.20073 0.91758 0.88195 1.49883 0.92820 1.18907 0.97577 0.93166 0.85656 1.21485 0.94675 0.92820 0.92917 1.60341 1.05423 1.63577 0.99046 1.21454 0.94533 0.95197 0.90475 0.94647 1.21425 0.99192 0.93558 0.99623 1.22220 0.91946 0.85950 0.99524 1.86411 1.42408 1.19530 1.90398 1.21361 0.96589 0.98626 0.94256 1.21622 0.97191 1.01463 0.94958 1.21524 0.97013 0.98583 0.98428 1.21531 0.99350 0.98377 0.96334 1.21500 0.97603 1.01258 0.95079 1.21639 0.96413 0.98333 0.99246 1.23099 1.00087 0.95461 1.07163 1.22456 0.90829 1.01418 1.04482 0.93504 0.98943 0.91632 0.84664 0.92628 0.91209 0.90448 0.95332 0.78421 0.90242 0.92299 0.91515 0.92134 0.92459 0.92553 0.92301 0.91979 0.92362 0.91341 0.92406 0.92294 0.90722 0.89954 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.04 12.74 55.43 0.71 -24.34 16 2 C 0.08 2.07 5.42 -17.82 -0.10 1.98 16 3 Si 0.88 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.46 -12.17 8.03 -34.44 -0.28 -12.45 16 8 H 0.05 1.44 7.81 -52.49 -0.41 1.03 16 9 C 0.05 1.14 1.83 -155.66 -0.29 0.86 16 10 C 0.11 2.39 5.58 -3.83 -0.02 2.37 16 11 N -0.65 -12.46 4.61 -106.73 -0.49 -12.96 16 12 C 0.09 1.51 1.92 -67.71 -0.13 1.38 16 13 H 0.04 0.58 7.83 -51.93 -0.41 0.17 16 14 C -0.10 -1.74 5.11 -26.73 -0.14 -1.88 16 15 C 0.08 1.45 6.47 37.16 0.24 1.69 16 16 O -0.58 -10.61 13.66 -35.23 -0.48 -11.10 16 17 C -0.09 -1.18 1.56 -90.62 -0.14 -1.32 16 18 C -0.11 -1.32 4.85 -26.73 -0.13 -1.45 16 19 C -0.12 -1.19 5.92 -26.73 -0.16 -1.34 16 20 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 21 C -0.12 -1.23 5.92 -26.73 -0.16 -1.38 16 22 C -0.12 -1.45 4.98 -26.73 -0.13 -1.58 16 23 C -0.22 -4.80 9.88 -26.73 -0.26 -5.07 16 24 C -0.15 -3.65 9.27 -26.73 -0.25 -3.90 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H -0.01 -0.15 7.90 -51.93 -0.41 -0.56 16 27 H 0.07 1.59 7.48 -51.93 -0.39 1.20 16 28 H 0.33 6.10 6.21 -39.29 -0.24 5.85 16 29 H 0.06 0.87 6.41 -51.93 -0.33 0.54 16 30 H 0.07 1.43 7.53 -51.93 -0.39 1.04 16 31 H 0.08 1.65 7.44 -51.93 -0.39 1.26 16 32 H 0.03 0.45 6.71 -51.93 -0.35 0.10 16 33 H 0.37 5.20 9.12 45.56 0.42 5.61 16 34 H 0.08 1.13 6.55 -51.93 -0.34 0.79 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.81 6.42 -51.93 -0.33 0.47 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.90 6.21 -51.93 -0.32 0.58 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 46 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 47 H 0.08 2.11 8.14 -51.93 -0.42 1.68 16 48 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 364.07 15.07 5.49 5.49 Total: -1.00 -28.54 364.07 -10.00 -38.54 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -8.10 Total: 11.40 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: -2.10 Total: -23.40 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.21 Total: -37.29 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -0.48 Total: -11.10 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.54 -10.00 -38.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602806081.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.549 kcal (2) G-P(sol) polarization free energy of solvation -28.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds