Wall clock time and date at job start Tue Mar 31 2020 05:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00130 * 2 1 4 4 H 1.48504 * 109.47121 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47302 * 300.00141 * 3 2 1 6 6 H 1.48500 * 109.47500 * 60.00252 * 3 2 1 7 7 C 1.37875 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00121 * 180.10094 * 7 2 1 9 9 C 1.50703 * 120.00058 * 0.10088 * 7 2 1 10 10 C 1.52996 * 115.54850 * 86.83075 * 9 7 2 11 11 N 1.46899 * 109.47220 * 39.04199 * 10 9 7 12 12 C 1.46897 * 110.99806 * 271.26672 * 11 10 9 13 13 H 1.08996 * 109.47611 * 31.86746 * 12 11 10 14 14 C 1.53007 * 109.47340 * 271.86472 * 12 11 10 15 15 C 1.52996 * 109.46835 * 65.45669 * 14 12 11 16 16 O 1.42907 * 109.46911 * 174.71880 * 15 14 12 17 17 C 1.53005 * 109.47034 * 151.86686 * 12 11 10 18 18 C 1.52999 * 109.46979 * 179.97438 * 17 12 11 19 19 C 1.53000 * 109.47110 * 179.97438 * 18 17 12 20 20 C 1.53007 * 109.47067 * 300.00472 * 19 18 17 21 21 C 1.52994 * 109.47130 * 60.00086 * 20 19 18 22 22 C 1.52998 * 109.46894 * 299.99903 * 17 12 11 23 23 C 1.52999 * 117.52014 * 232.53188 * 9 7 2 24 24 C 1.52999 * 60.00080 * 107.48044 * 23 9 7 25 25 H 0.97008 * 119.99601 * 5.00282 * 1 2 3 26 26 H 1.09000 * 109.47278 * 279.03915 * 10 9 7 27 27 H 1.09007 * 109.47106 * 159.04232 * 10 9 7 28 28 H 1.00899 * 111.00220 * 35.22614 * 11 10 9 29 29 H 1.08995 * 109.47129 * 185.45883 * 14 12 11 30 30 H 1.09005 * 109.47013 * 305.45627 * 14 12 11 31 31 H 1.08998 * 109.47366 * 294.71616 * 15 14 12 32 32 H 1.08997 * 109.47388 * 54.71783 * 15 14 12 33 33 H 0.96701 * 113.99714 * 179.97438 * 16 15 14 34 34 H 1.08994 * 109.47215 * 60.00294 * 17 12 11 35 35 H 1.08999 * 109.47633 * 299.99933 * 18 17 12 36 36 H 1.09006 * 109.47009 * 60.00505 * 18 17 12 37 37 H 1.08996 * 109.47388 * 180.02562 * 19 18 17 38 38 H 1.09004 * 109.47162 * 60.00131 * 19 18 17 39 39 H 1.08996 * 109.46992 * 299.99195 * 20 19 18 40 40 H 1.09007 * 109.46417 * 180.02562 * 20 19 18 41 41 H 1.08999 * 109.47223 * 179.97438 * 21 20 19 42 42 H 1.08996 * 109.47911 * 59.99671 * 21 20 19 43 43 H 1.08994 * 109.46998 * 300.00081 * 22 17 12 44 44 H 1.08996 * 109.46963 * 60.00072 * 22 17 12 45 45 H 1.08998 * 117.50009 * 214.96897 * 23 9 7 46 46 H 1.09004 * 117.49836 * 359.97438 * 23 9 7 47 47 H 1.08995 * 117.50376 * 252.51408 * 24 23 9 48 48 H 1.09003 * 117.51716 * 107.47769 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0022 9 6 1.2509 -2.4992 -0.0012 10 6 0.8570 -3.0318 -1.3803 11 7 1.9491 -2.7844 -2.3311 12 6 1.8081 -1.4658 -2.9630 13 1 1.3417 -0.7744 -2.2613 14 6 0.9348 -1.5901 -4.2132 15 6 -0.4856 -1.9866 -3.8056 16 8 -1.3304 -1.9829 -4.9582 17 6 3.1895 -0.9384 -3.3564 18 6 3.0427 0.4346 -4.0152 19 6 4.4240 0.9622 -4.4079 20 6 5.2967 1.0872 -3.1573 21 6 5.4436 -0.2859 -2.4987 22 6 4.0628 -0.8141 -2.1063 23 6 1.6106 -3.5246 1.0759 24 6 0.2878 -2.7603 1.1586 25 1 -0.4850 0.8369 -0.0733 26 1 -0.0446 -2.5236 -1.7222 27 1 0.6676 -4.1034 -1.3154 28 1 2.8477 -2.8757 -1.8814 29 1 0.9094 -0.6336 -4.7353 30 1 1.3500 -2.3527 -4.8721 31 1 -0.4727 -2.9846 -3.3678 32 1 -0.8660 -1.2738 -3.0741 33 1 -2.2481 -2.2259 -4.7740 34 1 3.6560 -1.6297 -4.0582 35 1 2.4206 0.3457 -4.9058 36 1 2.5760 1.1262 -3.3136 37 1 4.3195 1.9406 -4.8768 38 1 4.8912 0.2708 -5.1093 39 1 4.8297 1.7786 -2.4560 40 1 6.2807 1.4636 -3.4372 41 1 6.0657 -0.1969 -1.6080 42 1 5.9106 -0.9773 -3.2000 43 1 3.5963 -0.1228 -1.4045 44 1 4.1674 -1.7925 -1.6374 45 1 1.5666 -4.5787 0.8020 46 1 2.3928 -3.2555 1.7858 47 1 0.1994 -1.9884 1.9229 48 1 -0.6267 -3.3113 0.9389 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602806082.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:01 Heat of formation + Delta-G solvation = -50.197523 kcal Electronic energy + Delta-G solvation = -24961.134060 eV Core-core repulsion = 21822.549128 eV Total energy + Delta-G solvation = -3138.584932 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.09115 -37.03248 -36.37319 -34.51130 -32.08059 -31.00982 -30.22773 -29.42197 -25.88238 -25.27879 -23.16866 -22.00663 -21.24157 -21.06286 -19.64156 -19.43645 -18.99228 -16.81560 -15.94292 -15.65774 -15.16266 -14.69570 -14.10766 -13.91900 -13.81562 -13.70231 -13.28593 -13.18549 -12.79638 -12.74952 -12.26752 -11.89689 -11.80021 -11.59847 -11.23379 -11.15717 -10.94712 -10.87469 -10.83369 -10.73534 -10.46821 -10.38459 -10.13602 -10.10183 -9.67115 -9.48943 -9.40438 -9.36444 -9.26575 -8.92780 -8.46730 -8.05221 -7.20517 -6.11840 -4.15347 3.17078 3.27615 3.29462 4.28648 4.69073 5.04569 5.12674 5.16174 5.19325 5.24503 5.45381 5.67101 5.68699 5.74223 5.82828 5.92532 5.94535 5.97225 6.01691 6.03632 6.17729 6.18964 6.32135 6.35217 6.38123 6.47425 6.49395 6.57129 6.60768 6.61842 6.66337 6.67065 6.72958 6.79169 6.81676 6.89241 7.04153 7.10284 7.13336 7.33277 7.47112 7.59147 7.78991 8.04237 8.12988 8.36494 8.53528 8.84352 9.46577 10.95809 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.011841 B = 0.009549 C = 0.007138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.081047 B = 2931.514835 C = 3921.556772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.078 3.922 3 Si 0.862 3.138 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.288 1.288 7 C -0.489 4.489 8 H 0.068 0.932 9 C 0.011 3.989 10 C 0.087 3.913 11 N -0.674 5.674 12 C 0.087 3.913 13 H 0.093 0.907 14 C -0.104 4.104 15 C 0.072 3.928 16 O -0.586 6.586 17 C -0.076 4.076 18 C -0.119 4.119 19 C -0.115 4.115 20 C -0.121 4.121 21 C -0.120 4.120 22 C -0.122 4.122 23 C -0.214 4.214 24 C -0.154 4.154 25 H 0.258 0.742 26 H 0.070 0.930 27 H 0.039 0.961 28 H 0.339 0.661 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.371 0.629 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.098 -0.884 -6.341 7.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.125 4.125 3 Si 0.690 3.310 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.214 1.214 7 C -0.527 4.527 8 H 0.086 0.914 9 C 0.009 3.991 10 C -0.043 4.043 11 N -0.305 5.305 12 C -0.023 4.023 13 H 0.111 0.889 14 C -0.143 4.143 15 C -0.005 4.005 16 O -0.391 6.391 17 C -0.095 4.095 18 C -0.157 4.157 19 C -0.153 4.153 20 C -0.158 4.158 21 C -0.157 4.157 22 C -0.160 4.160 23 C -0.252 4.252 24 C -0.192 4.192 25 H 0.068 0.932 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.158 0.842 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.216 0.784 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.105 0.895 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.091 0.909 47 H 0.098 0.902 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.199 -0.921 -7.093 8.294 hybrid contribution 0.060 1.422 1.255 1.897 sum 4.259 0.501 -5.838 7.244 Atomic orbital electron populations 1.70004 1.05600 1.26357 1.49148 1.24843 0.94627 0.98186 0.94860 0.87079 0.80928 0.85095 0.77870 1.18835 1.20459 1.21448 1.20597 0.92695 0.88424 1.50962 0.91448 1.19746 0.98190 0.93537 0.87596 1.21811 0.94463 0.96839 0.91183 1.60946 1.06560 1.28889 1.34075 1.21603 0.93957 0.92105 0.94654 0.88940 1.21619 0.93185 1.00828 0.98626 1.22545 0.90933 1.00444 0.86552 1.86420 1.23566 1.93002 1.36097 1.21131 0.95882 0.95619 0.96853 1.21675 0.96306 0.97267 1.00411 1.21505 0.96248 1.00247 0.97280 1.21545 0.98941 0.97890 0.97432 1.21559 0.98331 0.96212 0.99610 1.21988 0.93847 1.02253 0.97876 1.23031 0.99994 0.95597 1.06543 1.22408 0.90890 1.01224 1.04670 0.93165 0.91130 0.94312 0.84173 0.92106 0.92069 0.92748 0.93220 0.78373 0.91942 0.91931 0.92122 0.92765 0.92285 0.92454 0.92841 0.92706 0.92642 0.89478 0.91490 0.91941 0.90927 0.90193 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.74 12.66 55.43 0.70 -22.04 16 2 C 0.08 1.92 3.93 -17.82 -0.07 1.85 16 3 Si 0.86 19.72 27.31 -169.99 -4.64 15.08 16 4 H -0.26 -5.84 6.64 56.52 0.38 -5.47 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.49 -11.61 5.03 -34.44 -0.17 -11.78 16 8 H 0.07 1.61 5.39 -52.49 -0.28 1.33 16 9 C 0.01 0.24 1.62 -155.66 -0.25 -0.01 16 10 C 0.09 1.80 5.06 -3.83 -0.02 1.78 16 11 N -0.67 -12.92 6.22 -106.72 -0.66 -13.58 16 12 C 0.09 1.64 1.17 -67.71 -0.08 1.56 16 13 H 0.09 2.07 5.10 -51.93 -0.27 1.81 16 14 C -0.10 -1.89 5.05 -26.73 -0.14 -2.02 16 15 C 0.07 1.30 5.53 37.16 0.21 1.51 16 16 O -0.59 -9.75 13.66 -35.23 -0.48 -10.23 16 17 C -0.08 -1.29 1.89 -90.62 -0.17 -1.46 16 18 C -0.12 -1.93 4.86 -26.73 -0.13 -2.06 16 19 C -0.12 -1.62 5.92 -26.73 -0.16 -1.77 16 20 C -0.12 -1.75 5.92 -26.73 -0.16 -1.91 16 21 C -0.12 -1.81 5.92 -26.76 -0.16 -1.97 16 22 C -0.12 -2.16 3.35 -26.75 -0.09 -2.25 16 23 C -0.21 -4.50 9.88 -26.73 -0.26 -4.76 16 24 C -0.15 -3.48 9.18 -26.73 -0.25 -3.73 16 25 H 0.26 6.60 8.32 -40.82 -0.34 6.26 16 26 H 0.07 1.54 4.77 -51.93 -0.25 1.30 16 27 H 0.04 0.77 7.94 -51.92 -0.41 0.36 16 28 H 0.34 6.56 5.50 -39.29 -0.22 6.34 16 29 H 0.06 1.08 6.15 -51.93 -0.32 0.76 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.99 6.20 -51.93 -0.32 0.67 16 32 H 0.05 0.99 7.73 -51.93 -0.40 0.59 16 33 H 0.37 4.45 9.12 45.56 0.42 4.87 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.06 0.96 6.31 -51.93 -0.33 0.64 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.09 1.76 2.85 -51.93 -0.15 1.61 16 44 H 0.07 1.21 5.65 -51.93 -0.29 0.91 16 45 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 46 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 47 H 0.08 1.98 8.14 -51.93 -0.42 1.55 16 48 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 341.84 15.07 5.15 5.15 Total: -1.00 -25.43 341.84 -9.31 -34.73 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: -7.47 Total: 17.91 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: -1.90 Total: -27.03 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.04 Total: -35.62 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: -0.48 Total: -10.23 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.64 Total: 15.08 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -25.43 -9.31 -34.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602806082.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.463 kcal (2) G-P(sol) polarization free energy of solvation -25.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds