Wall clock time and date at job start Tue Mar 31 2020 05:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47372 * 2 1 4 4 C 1.52999 * 109.46825 * 119.99810 * 2 1 3 5 5 C 1.53000 * 109.46988 * 123.55488 * 4 2 1 6 6 C 1.53005 * 109.87644 * 186.62471 * 5 4 2 7 7 O 1.42898 * 109.47669 * 306.24484 * 6 5 4 8 8 C 1.54316 * 109.89241 * 65.42994 * 5 4 2 9 9 C 1.55135 * 103.01958 * 218.31012 * 8 5 4 10 10 C 1.54905 * 101.65549 * 35.65026 * 9 8 5 11 11 N 1.47442 * 109.88969 * 307.65396 * 5 4 2 12 12 C 1.46898 * 111.00125 * 356.15154 * 11 5 4 13 13 C 1.52998 * 109.47331 * 194.50066 * 12 11 5 14 14 C 1.50699 * 115.54868 * 34.33229 * 13 12 11 15 15 H 1.08007 * 120.00002 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00157 * 179.97438 * 14 13 12 17 17 N 1.31522 * 120.00015 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00169 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47430 * 89.99834 * 18 16 14 20 20 H 1.48505 * 109.47108 * 209.99937 * 18 16 14 21 21 H 1.48495 * 109.47130 * 329.99733 * 18 16 14 22 22 C 1.52997 * 117.50143 * 248.62055 * 13 12 11 23 23 C 1.52996 * 60.00184 * 252.50968 * 22 13 12 24 24 H 1.08998 * 109.47467 * 300.00198 * 1 2 3 25 25 H 1.09005 * 109.47107 * 60.00421 * 1 2 3 26 26 H 1.09001 * 109.47297 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47347 * 239.99260 * 2 1 3 28 28 H 1.08997 * 109.46943 * 220.81022 * 3 2 1 29 29 H 1.09005 * 109.46717 * 340.80313 * 3 2 1 30 30 H 1.08997 * 109.47170 * 100.80061 * 3 2 1 31 31 H 1.08997 * 109.47237 * 243.55187 * 4 2 1 32 32 H 1.09001 * 109.47099 * 3.55331 * 4 2 1 33 33 H 1.09007 * 109.47048 * 66.24983 * 6 5 4 34 34 H 1.09002 * 109.46796 * 186.24295 * 6 5 4 35 35 H 0.96694 * 114.00405 * 184.92175 * 7 6 5 36 36 H 1.09002 * 110.70317 * 336.68945 * 8 5 4 37 37 H 1.09000 * 110.70677 * 99.92415 * 8 5 4 38 38 H 1.09007 * 110.99001 * 277.55670 * 9 8 5 39 39 H 1.08998 * 110.99308 * 153.74164 * 9 8 5 40 40 H 1.08996 * 110.37539 * 204.10263 * 10 9 8 41 41 H 1.09001 * 110.37485 * 81.75699 * 10 9 8 42 42 H 1.09002 * 109.46949 * 314.50790 * 12 11 5 43 43 H 1.09000 * 109.46775 * 74.49933 * 12 11 5 44 44 H 0.96996 * 119.99475 * 180.02562 * 17 16 14 45 45 H 1.09005 * 117.49841 * 0.02562 * 22 13 12 46 46 H 1.09002 * 117.49777 * 145.01513 * 22 13 12 47 47 H 1.08997 * 117.50070 * 252.51340 * 23 22 13 48 48 H 1.09004 * 117.49836 * 107.48671 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.9616 -1.8698 0.8345 6 6 3.3454 -2.6982 2.0624 7 8 3.8925 -1.8390 3.0646 8 6 4.2300 -1.3075 0.1591 9 6 4.4985 -2.3241 -0.9816 10 6 3.0585 -2.6973 -1.4135 11 7 2.2823 -2.7256 -0.1555 12 6 0.9011 -2.2780 -0.3788 13 6 0.1231 -3.3713 -1.1138 14 6 0.5030 -4.7868 -0.7632 15 1 1.2793 -4.9732 -0.0358 16 6 -0.1404 -5.8439 -1.3709 17 7 -1.0861 -5.6170 -2.2564 18 14 0.3310 -7.5986 -0.9368 19 1 -0.5015 -8.0681 0.1997 20 1 0.1046 -8.4772 -2.1124 21 1 1.7647 -7.6454 -0.5527 22 6 -0.2987 -3.0894 -2.5572 23 6 -1.3455 -3.0945 -1.4415 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 2.8945 1.5257 -0.6716 29 1 1.2461 2.1085 -0.3379 30 1 2.3427 1.7208 1.0094 31 1 2.5925 -0.0194 1.8739 32 1 1.1939 -1.1186 1.8102 33 1 2.4595 -3.1970 2.4555 34 1 4.0873 -3.4449 1.7794 35 1 4.2274 -2.3056 3.8426 36 1 4.0420 -0.3135 -0.2469 37 1 5.0636 -1.2869 0.8611 38 1 5.0330 -3.1977 -0.6083 39 1 5.0431 -1.8561 -1.8016 40 1 3.0470 -3.6782 -1.8886 41 1 2.6574 -1.9424 -2.0899 42 1 0.4251 -2.0757 0.5807 43 1 0.9067 -1.3690 -0.9804 44 1 -1.5389 -6.3608 -2.6836 45 1 -0.0215 -2.1252 -2.9834 46 1 -0.3012 -3.9279 -3.2537 47 1 -2.0368 -3.9364 -1.4038 48 1 -1.7575 -2.1335 -1.1334 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602815059.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:07 Heat of formation + Delta-G solvation = 45.765384 kcal Electronic energy + Delta-G solvation = -25121.870286 eV Core-core repulsion = 21987.446618 eV Total energy + Delta-G solvation = -3134.423668 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.75540 -36.80457 -35.82071 -35.27337 -31.82707 -30.79255 -30.43613 -27.45927 -25.83893 -25.71255 -24.81983 -23.55310 -21.07115 -20.51982 -20.29275 -18.81490 -18.50176 -17.03190 -16.09793 -15.47908 -15.06885 -14.73856 -14.48199 -14.16473 -13.72167 -13.64240 -13.42569 -13.09929 -12.89878 -12.35290 -12.15688 -11.96311 -11.79450 -11.36374 -11.11672 -11.00576 -10.97432 -10.82324 -10.69300 -10.61727 -10.56676 -10.34433 -10.18494 -10.06213 -9.94234 -9.90113 -9.76501 -9.56385 -9.11081 -8.61212 -8.19508 -7.87185 -7.28121 -5.80013 -3.81506 3.35749 3.43058 3.47041 4.15350 4.52066 4.84109 4.92430 5.07609 5.16527 5.19076 5.22297 5.30951 5.37261 5.63080 5.65239 5.77240 5.81396 5.87204 5.94256 5.96146 6.02243 6.08736 6.12692 6.16038 6.17952 6.24002 6.32008 6.37000 6.43173 6.47699 6.54483 6.59511 6.65158 6.71831 6.75702 6.80350 6.86847 7.13982 7.30606 7.40717 7.77388 7.82151 7.84940 8.04702 8.22309 8.33584 8.74771 9.19763 9.72459 11.16112 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017057 B = 0.007074 C = 0.005915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.174017 B = 3957.293483 C = 4732.549346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.110 4.110 3 C -0.148 4.148 4 C -0.113 4.113 5 C 0.103 3.897 6 C 0.097 3.903 7 O -0.578 6.578 8 C -0.128 4.128 9 C -0.135 4.135 10 C 0.059 3.941 11 N -0.497 5.497 12 C 0.054 3.946 13 C 0.023 3.977 14 C -0.443 4.443 15 H 0.072 0.928 16 C 0.049 3.951 17 N -0.888 5.888 18 Si 0.891 3.109 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.275 1.275 22 C -0.193 4.193 23 C -0.193 4.193 24 H 0.046 0.954 25 H 0.048 0.952 26 H 0.099 0.901 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.373 0.627 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.037 0.963 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.254 0.746 45 H 0.034 0.966 46 H 0.106 0.894 47 H 0.108 0.892 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.484 9.658 5.516 13.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.128 4.128 3 C -0.205 4.205 4 C -0.151 4.151 5 C 0.013 3.987 6 C 0.018 3.982 7 O -0.382 6.382 8 C -0.167 4.167 9 C -0.173 4.173 10 C -0.069 4.069 11 N -0.221 5.221 12 C -0.071 4.071 13 C 0.022 3.978 14 C -0.481 4.481 15 H 0.091 0.909 16 C -0.150 4.150 17 N -0.528 5.528 18 Si 0.720 3.280 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.200 1.200 22 C -0.230 4.230 23 C -0.231 4.231 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.118 0.882 27 H 0.105 0.895 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.219 0.781 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.104 0.896 41 H 0.055 0.945 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.064 0.936 45 H 0.053 0.947 46 H 0.125 0.875 47 H 0.126 0.874 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.159 9.487 5.154 13.533 hybrid contribution 0.195 -0.681 0.154 0.724 sum 8.354 8.806 5.308 13.248 Atomic orbital electron populations 1.22947 0.94906 1.05138 1.00778 1.21762 0.96219 0.95355 0.99435 1.22109 1.00407 0.96665 1.01354 1.22213 0.98966 0.97062 0.96868 1.21634 0.93502 0.90979 0.92593 1.22062 0.97080 0.91297 0.87737 1.86398 1.82282 1.37923 1.31569 1.22840 0.97666 0.98637 0.97531 1.22781 0.97807 0.98881 0.97844 1.22915 0.90720 1.01603 0.91658 1.63154 1.02137 1.49555 1.07302 1.23654 0.87084 0.96733 0.99615 1.19089 0.91766 0.93945 0.93008 1.20693 1.17785 0.88033 1.21588 0.90938 1.25064 0.95500 0.98890 0.95592 1.70033 1.24695 1.30150 1.27890 0.86613 0.78769 0.85111 0.77546 1.21126 1.21723 1.20007 1.22837 1.06602 0.98523 0.95086 1.22828 0.95647 0.98916 1.05707 0.93531 0.93309 0.88243 0.89481 0.93340 0.93069 0.92811 0.91300 0.91517 0.93044 0.93610 0.78107 0.91456 0.91179 0.91244 0.91691 0.89579 0.94456 0.90791 0.91664 0.93590 0.94715 0.87548 0.87371 0.94298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.72 7.35 37.16 0.27 -2.45 16 2 C -0.11 -1.59 1.42 -90.62 -0.13 -1.72 16 3 C -0.15 -1.84 9.31 37.16 0.35 -1.49 16 4 C -0.11 -1.69 3.49 -26.73 -0.09 -1.78 16 5 C 0.10 1.61 0.67 -130.61 -0.09 1.52 16 6 C 0.10 1.44 6.19 37.16 0.23 1.67 16 7 O -0.58 -7.45 12.47 -35.23 -0.44 -7.89 16 8 C -0.13 -1.80 5.59 -24.91 -0.14 -1.94 16 9 C -0.14 -1.93 7.08 -24.60 -0.17 -2.10 16 10 C 0.06 1.03 5.84 -2.30 -0.01 1.02 16 11 N -0.50 -9.15 3.56 -215.76 -0.77 -9.92 16 12 C 0.05 1.07 1.80 -3.83 -0.01 1.06 16 13 C 0.02 0.54 2.09 -155.66 -0.33 0.22 16 14 C -0.44 -11.75 8.67 -34.44 -0.30 -12.05 16 15 H 0.07 1.95 7.22 -52.48 -0.38 1.57 16 16 C 0.05 1.32 5.28 -17.82 -0.09 1.23 16 17 N -0.89 -24.77 8.59 55.43 0.48 -24.30 16 18 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C -0.19 -4.71 9.31 -26.73 -0.25 -4.96 16 23 C -0.19 -4.72 9.25 -26.73 -0.25 -4.96 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.71 8.13 -51.93 -0.42 0.28 16 26 H 0.10 1.72 3.00 -51.94 -0.16 1.56 16 27 H 0.09 1.41 3.55 -51.93 -0.18 1.22 16 28 H 0.05 0.57 7.64 -51.93 -0.40 0.17 16 29 H 0.05 0.60 7.69 -51.93 -0.40 0.20 16 30 H 0.05 0.64 7.11 -51.93 -0.37 0.27 16 31 H 0.07 1.01 6.68 -51.93 -0.35 0.66 16 32 H 0.07 1.07 6.35 -51.93 -0.33 0.74 16 33 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.37 3.15 9.12 45.56 0.42 3.57 16 36 H 0.07 0.92 6.05 -51.93 -0.31 0.60 16 37 H 0.07 0.95 7.54 -51.93 -0.39 0.56 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 41 H 0.04 0.66 6.81 -51.93 -0.35 0.31 16 42 H 0.07 1.47 4.34 -51.93 -0.23 1.24 16 43 H 0.07 1.22 2.65 -52.58 -0.14 1.08 16 44 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 45 H 0.03 0.78 8.05 -51.93 -0.42 0.36 16 46 H 0.11 2.92 6.29 -51.93 -0.33 2.59 16 47 H 0.11 2.97 6.28 -51.93 -0.33 2.64 16 48 H 0.04 0.86 7.24 -51.93 -0.38 0.48 16 LS Contribution 337.71 15.07 5.09 5.09 Total: -1.00 -28.06 337.71 -8.78 -36.84 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -7.11 Total: 10.58 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: -1.01 Total: -26.75 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: -0.29 Total: -34.22 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: -0.44 Total: -7.89 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.06 -8.78 -36.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602815059.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.607 kcal (2) G-P(sol) polarization free energy of solvation -28.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds