Wall clock time and date at job start Tue Mar 31 2020 05:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46826 * 2 1 4 4 C 1.53000 * 109.47315 * 119.99911 * 2 1 3 5 5 C 1.52997 * 109.47312 * 174.76058 * 4 2 1 6 6 C 1.53001 * 109.87798 * 306.46344 * 5 4 2 7 7 O 1.42894 * 109.47287 * 66.80505 * 6 5 4 8 8 C 1.54359 * 110.04456 * 67.54699 * 5 4 2 9 9 C 1.55135 * 102.99704 * 141.73160 * 8 5 4 10 10 C 1.54904 * 101.69004 * 324.39626 * 9 8 5 11 11 N 1.47449 * 109.88723 * 185.43504 * 5 4 2 12 12 C 1.46898 * 111.00238 * 3.68629 * 11 5 4 13 13 C 1.52994 * 109.47016 * 169.11606 * 12 11 5 14 14 C 1.50693 * 115.55176 * 45.54102 * 13 12 11 15 15 H 1.08000 * 120.00357 * 6.20405 * 14 13 12 16 16 C 1.37886 * 120.00094 * 186.20447 * 14 13 12 17 17 N 1.31512 * 119.99834 * 3.14496 * 16 14 13 18 18 Si 1.86794 * 119.99903 * 183.14759 * 16 14 13 19 19 H 1.48500 * 109.47167 * 94.99915 * 18 16 14 20 20 H 1.48505 * 109.46829 * 214.99552 * 18 16 14 21 21 H 1.48495 * 109.47301 * 334.99644 * 18 16 14 22 22 C 1.53005 * 117.49698 * 259.83113 * 13 12 11 23 23 C 1.52998 * 60.00134 * 252.51165 * 22 13 12 24 24 H 1.09008 * 109.47234 * 304.95978 * 1 2 3 25 25 H 1.08996 * 109.47560 * 64.96320 * 1 2 3 26 26 H 1.08998 * 109.47294 * 184.96200 * 1 2 3 27 27 H 1.08993 * 109.47213 * 239.99876 * 2 1 3 28 28 H 1.08994 * 109.47560 * 310.32283 * 3 2 1 29 29 H 1.09001 * 109.46795 * 70.32679 * 3 2 1 30 30 H 1.08997 * 109.46743 * 190.32192 * 3 2 1 31 31 H 1.09001 * 109.46918 * 54.75650 * 4 2 1 32 32 H 1.09002 * 109.47236 * 294.76461 * 4 2 1 33 33 H 1.08998 * 109.47147 * 186.81213 * 6 5 4 34 34 H 1.09008 * 109.46923 * 306.80737 * 6 5 4 35 35 H 0.96697 * 114.00463 * 179.97438 * 7 6 5 36 36 H 1.09003 * 110.68672 * 23.37347 * 8 5 4 37 37 H 1.08993 * 110.74239 * 260.12348 * 8 5 4 38 38 H 1.09000 * 110.99530 * 206.28275 * 9 8 5 39 39 H 1.09001 * 110.99251 * 82.50677 * 9 8 5 40 40 H 1.09005 * 110.37453 * 155.87780 * 10 9 8 41 41 H 1.09001 * 110.37892 * 278.22095 * 10 9 8 42 42 H 1.09000 * 109.46893 * 289.11528 * 12 11 5 43 43 H 1.09004 * 109.47212 * 49.11222 * 12 11 5 44 44 H 0.96997 * 120.00261 * 179.97438 * 17 16 14 45 45 H 1.09002 * 117.49931 * 0.02562 * 22 13 12 46 46 H 1.08996 * 117.49945 * 145.02025 * 22 13 12 47 47 H 1.08997 * 117.49992 * 252.51090 * 23 22 13 48 48 H 1.09001 * 117.49964 * 107.49066 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5643 -0.8363 1.1851 6 6 3.9819 -1.4862 -0.1356 7 8 3.6642 -0.6103 -1.2189 8 6 4.2061 0.5623 1.3070 9 6 5.4617 0.2952 2.1782 10 6 4.9464 -0.8009 3.1438 11 7 4.0545 -1.6427 2.3180 12 6 2.9367 -2.1650 3.1152 13 6 3.4600 -3.2061 4.1067 14 6 4.7089 -2.8196 4.8562 15 1 5.1159 -1.8248 4.7509 16 6 5.3323 -3.7362 5.6763 17 7 4.8728 -4.9658 5.7568 18 14 6.8291 -3.2313 6.6731 19 1 6.4028 -2.8310 8.0382 20 1 7.7718 -4.3751 6.7645 21 1 7.5028 -2.0864 6.0093 22 6 3.2826 -4.6813 3.7415 23 6 2.4273 -4.0586 4.8468 24 1 -0.3634 0.5889 0.8423 25 1 -0.3634 0.4349 -0.9310 26 1 -0.3634 -1.0238 0.0889 27 1 1.8933 -0.5138 -0.8899 28 1 1.5341 2.0068 -0.7834 29 1 1.8348 1.9004 0.9677 30 1 3.1142 1.4481 -0.1841 31 1 1.6020 -1.7182 1.2974 32 1 1.7553 -0.1561 2.1368 33 1 5.0552 -1.6754 -0.1240 34 1 3.4482 -2.4283 -0.2616 35 1 3.9022 -0.9584 -2.0891 36 1 3.5292 1.2541 1.8084 37 1 4.4912 0.9430 0.3264 38 1 5.7550 1.1911 2.7254 39 1 6.2868 -0.0762 1.5705 40 1 5.7788 -1.3917 3.5262 41 1 4.3897 -0.3514 3.9661 42 1 2.4666 -1.3472 3.6613 43 1 2.2044 -2.6287 2.4541 44 1 5.3115 -5.6107 6.3334 45 1 2.7934 -4.9101 2.7947 46 1 4.0694 -5.3725 4.0432 47 1 2.6514 -4.3402 5.8756 48 1 1.3750 -3.8777 4.6273 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602815060.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:09 Heat of formation + Delta-G solvation = 15.120542 kcal Electronic energy + Delta-G solvation = -24680.415569 eV Core-core repulsion = 21544.663041 eV Total energy + Delta-G solvation = -3135.752528 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.13763 -36.96515 -35.72503 -35.07554 -31.97958 -30.94789 -30.26270 -27.15449 -26.02876 -25.84952 -24.99004 -23.84064 -20.86617 -20.56385 -20.04299 -18.82116 -18.10262 -17.05026 -16.31477 -15.58833 -15.49317 -14.78024 -14.50335 -14.00690 -13.73904 -13.49745 -13.24557 -13.04221 -12.94873 -12.47881 -12.27549 -12.02904 -11.90051 -11.67913 -11.30328 -11.18183 -11.03896 -10.99487 -10.87541 -10.60243 -10.46865 -10.29564 -10.24961 -10.05094 -9.90878 -9.84777 -9.28698 -9.22870 -9.16872 -8.77300 -8.16522 -7.96156 -7.40309 -5.83515 -3.91460 3.30303 3.38388 3.39345 4.10640 4.43737 4.83763 4.93822 5.13829 5.17722 5.24397 5.30141 5.35892 5.52179 5.62710 5.65944 5.77344 5.82533 5.87688 6.00493 6.02662 6.04758 6.07314 6.10533 6.16917 6.23447 6.24838 6.29353 6.36517 6.41645 6.47190 6.56610 6.63550 6.69217 6.75130 6.86225 6.91195 6.96813 7.14075 7.27828 7.39877 7.73178 7.76655 7.87920 7.90530 8.13152 8.38128 8.65530 9.03219 9.62963 11.08300 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022429 B = 0.005645 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.078625 B = 4959.377623 C = 5561.934755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C -0.151 4.151 4 C -0.122 4.122 5 C 0.103 3.897 6 C 0.098 3.902 7 O -0.563 6.563 8 C -0.127 4.127 9 C -0.146 4.146 10 C 0.055 3.945 11 N -0.502 5.502 12 C 0.098 3.902 13 C 0.024 3.976 14 C -0.481 4.481 15 H 0.085 0.915 16 C 0.056 3.944 17 N -0.880 5.880 18 Si 0.889 3.111 19 H -0.284 1.284 20 H -0.288 1.288 21 H -0.273 1.273 22 C -0.185 4.185 23 C -0.195 4.195 24 H 0.045 0.955 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.107 0.893 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.045 0.955 35 H 0.367 0.633 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.107 0.893 41 H 0.044 0.956 42 H 0.021 0.979 43 H 0.057 0.943 44 H 0.255 0.745 45 H 0.034 0.966 46 H 0.128 0.872 47 H 0.092 0.908 48 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.126 9.338 -11.870 15.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 C -0.208 4.208 4 C -0.161 4.161 5 C 0.013 3.987 6 C 0.019 3.981 7 O -0.368 6.368 8 C -0.165 4.165 9 C -0.185 4.185 10 C -0.072 4.072 11 N -0.225 5.225 12 C -0.030 4.030 13 C 0.023 3.977 14 C -0.518 4.518 15 H 0.103 0.897 16 C -0.144 4.144 17 N -0.519 5.519 18 Si 0.717 3.283 19 H -0.210 1.210 20 H -0.214 1.214 21 H -0.198 1.198 22 C -0.222 4.222 23 C -0.234 4.234 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.124 0.876 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.214 0.786 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.125 0.875 41 H 0.062 0.938 42 H 0.039 0.961 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.052 0.948 46 H 0.146 0.854 47 H 0.110 0.890 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.013 9.104 -11.448 14.934 hybrid contribution 0.308 0.303 0.647 0.778 sum -2.706 9.407 -10.801 14.576 Atomic orbital electron populations 1.21893 0.96888 1.01005 1.00716 1.21446 0.93698 0.96925 1.00235 1.22245 1.03079 0.95824 0.99605 1.22247 0.95138 1.00736 0.97931 1.21628 0.93283 0.91965 0.91835 1.21984 0.98922 0.91447 0.85703 1.86553 1.85069 1.47875 1.17291 1.23147 0.96710 0.96530 1.00092 1.22981 0.97892 0.99055 0.98539 1.23515 0.97827 0.92225 0.93651 1.63160 1.17672 1.33355 1.08351 1.21870 0.91063 0.96413 0.93606 1.18887 0.95126 0.88332 0.95330 1.21370 1.07902 0.99118 1.23393 0.89748 1.25042 0.97329 0.95054 0.96972 1.69959 1.40482 1.03291 1.38197 0.86626 0.82927 0.78144 0.80570 1.21023 1.21395 1.19832 1.23112 1.03304 1.01406 0.94397 1.22650 0.92197 1.09672 0.98881 0.93580 0.93419 0.93271 0.87590 0.94431 0.94288 0.90148 0.91342 0.92446 0.93211 0.93712 0.78597 0.91610 0.90001 0.91810 0.91484 0.87503 0.93778 0.96121 0.92459 0.93426 0.94766 0.85394 0.88987 0.94133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.17 37.16 0.34 -1.41 16 2 C -0.10 -1.33 2.38 -90.62 -0.22 -1.55 16 3 C -0.15 -1.85 7.39 37.16 0.27 -1.57 16 4 C -0.12 -1.82 2.70 -26.73 -0.07 -1.90 16 5 C 0.10 1.59 0.86 -130.59 -0.11 1.48 16 6 C 0.10 1.34 6.02 37.16 0.22 1.57 16 7 O -0.56 -6.20 7.94 -35.23 -0.28 -6.48 16 8 C -0.13 -1.81 3.89 -24.89 -0.10 -1.90 16 9 C -0.15 -2.22 7.08 -24.60 -0.17 -2.40 16 10 C 0.05 1.03 4.45 -2.30 -0.01 1.02 16 11 N -0.50 -9.52 4.75 -215.73 -1.02 -10.54 16 12 C 0.10 2.03 3.90 -3.83 -0.01 2.02 16 13 C 0.02 0.59 2.44 -155.66 -0.38 0.21 16 14 C -0.48 -12.56 7.77 -34.44 -0.27 -12.83 16 15 H 0.08 2.10 3.48 -52.49 -0.18 1.91 16 16 C 0.06 1.51 5.27 -17.82 -0.09 1.42 16 17 N -0.88 -24.48 8.68 55.43 0.48 -24.00 16 18 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 C -0.18 -4.69 9.30 -26.73 -0.25 -4.94 16 23 C -0.20 -4.90 9.42 -26.73 -0.25 -5.15 16 24 H 0.05 0.55 8.14 -51.92 -0.42 0.12 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.11 1.36 4.98 -51.60 -0.26 1.10 16 28 H 0.04 0.42 8.11 -51.93 -0.42 0.00 16 29 H 0.04 0.49 7.37 -51.93 -0.38 0.10 16 30 H 0.08 1.01 3.74 -51.93 -0.19 0.81 16 31 H 0.07 1.09 5.97 -51.93 -0.31 0.78 16 32 H 0.06 0.91 7.19 -51.93 -0.37 0.54 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 35 H 0.37 2.55 9.12 45.91 0.42 2.96 16 36 H 0.07 0.94 6.19 -51.93 -0.32 0.62 16 37 H 0.08 1.10 5.43 -51.93 -0.28 0.82 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.11 2.27 5.94 -51.93 -0.31 1.96 16 41 H 0.04 0.87 7.09 -51.93 -0.37 0.50 16 42 H 0.02 0.43 7.02 -51.93 -0.36 0.07 16 43 H 0.06 1.15 5.73 -51.93 -0.30 0.86 16 44 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 45 H 0.03 0.81 8.13 -51.93 -0.42 0.39 16 46 H 0.13 3.60 5.62 -51.93 -0.29 3.31 16 47 H 0.09 2.52 6.93 -51.93 -0.36 2.16 16 48 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 335.73 15.07 5.06 5.06 Total: -1.00 -27.67 335.73 -9.12 -36.78 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -7.24 Total: 9.34 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: -1.10 Total: -25.93 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: -0.54 Total: -34.55 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -0.28 Total: -6.48 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.67 -9.12 -36.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602815060.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.903 kcal (2) G-P(sol) polarization free energy of solvation -27.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds