Wall clock time and date at job start Tue Mar 31 2020 06:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46983 * 2 1 4 4 C 1.52997 * 109.47135 * 239.99810 * 2 1 3 5 5 C 1.53007 * 109.46840 * 295.00095 * 4 2 1 6 6 H 1.08996 * 109.48191 * 54.99646 * 5 4 2 7 7 O 1.42906 * 109.47910 * 294.97640 * 5 4 2 8 8 C 1.42900 * 114.09836 * 178.87514 * 7 5 4 9 9 C 1.53100 * 109.42569 * 61.13659 * 8 7 5 10 10 C 1.53184 * 109.16076 * 302.39966 * 9 8 7 11 11 C 1.53091 * 109.47885 * 175.02473 * 5 4 2 12 12 H 1.09009 * 109.51864 * 297.55893 * 11 5 4 13 13 N 1.46901 * 109.52519 * 57.68133 * 11 5 4 14 14 C 1.46897 * 111.00138 * 204.99906 * 13 11 5 15 15 C 1.53001 * 109.47189 * 185.32970 * 14 13 11 16 16 C 1.50695 * 115.54587 * 39.52409 * 15 14 13 17 17 H 1.07995 * 120.00182 * 265.41677 * 16 15 14 18 18 C 1.37878 * 120.00245 * 85.42088 * 16 15 14 19 19 N 1.31523 * 119.99790 * 353.58096 * 18 16 15 20 20 Si 1.86802 * 120.00281 * 173.58029 * 18 16 15 21 21 H 1.48496 * 109.46962 * 90.00023 * 20 18 16 22 22 H 1.48501 * 109.46680 * 209.99833 * 20 18 16 23 23 H 1.48495 * 109.46848 * 329.99464 * 20 18 16 24 24 C 1.52993 * 117.49926 * 253.81533 * 15 14 13 25 25 C 1.52994 * 60.00073 * 252.50928 * 24 15 14 26 26 H 1.08996 * 109.47031 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46696 * 300.00350 * 1 2 3 28 28 H 1.08995 * 109.47536 * 60.00139 * 1 2 3 29 29 H 1.09004 * 109.47000 * 119.99726 * 2 1 3 30 30 H 1.08999 * 109.47316 * 60.00142 * 3 2 1 31 31 H 1.09002 * 109.46793 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47029 * 299.99708 * 3 2 1 33 33 H 1.09000 * 109.47047 * 54.99854 * 4 2 1 34 34 H 1.09002 * 109.47143 * 175.00228 * 4 2 1 35 35 H 1.09000 * 109.47277 * 301.15964 * 8 7 5 36 36 H 1.08998 * 109.49340 * 181.13204 * 8 7 5 37 37 H 1.08998 * 109.52107 * 182.49811 * 9 8 7 38 38 H 1.08994 * 109.57014 * 62.33446 * 9 8 7 39 39 H 1.08993 * 109.54266 * 297.11086 * 10 9 8 40 40 H 1.09002 * 109.61198 * 176.89219 * 10 9 8 41 41 H 1.00898 * 111.00137 * 328.95923 * 13 11 5 42 42 H 1.08996 * 109.47648 * 305.33418 * 14 13 11 43 43 H 1.09007 * 109.46972 * 65.32936 * 14 13 11 44 44 H 0.96996 * 119.99996 * 180.02562 * 19 18 16 45 45 H 1.09005 * 117.50144 * 0.02562 * 24 15 14 46 46 H 1.09001 * 117.50012 * 145.02152 * 24 15 14 47 47 H 1.09000 * 117.50152 * 252.50720 * 25 24 15 48 48 H 1.09007 * 117.49870 * 107.48886 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6352 -2.1955 -1.1878 6 1 0.5563 -2.2709 -1.0525 7 8 2.2983 -2.8265 -0.0904 8 6 1.9693 -4.2074 0.0743 9 6 2.3835 -4.9824 -1.1794 10 6 1.6821 -4.3772 -2.3994 11 6 2.0360 -2.8897 -2.4921 12 1 1.4981 -2.4377 -3.3255 13 7 3.4822 -2.7413 -2.7030 14 6 3.8189 -2.8380 -4.1295 15 6 5.3394 -2.8123 -4.2976 16 6 6.1204 -3.5846 -3.2659 17 1 6.5103 -3.0798 -2.3944 18 6 6.3372 -4.9358 -3.4344 19 7 5.7581 -5.5759 -4.4267 20 14 7.4533 -5.8572 -2.2534 21 1 6.6500 -6.3801 -1.1193 22 1 8.1004 -6.9887 -2.9650 23 1 8.4968 -4.9352 -1.7375 24 6 5.9680 -1.5297 -4.8459 25 6 5.8921 -2.7803 -5.7239 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6054 -0.2618 -2.1369 34 1 3.1263 -0.6444 -1.2951 35 1 0.8948 -4.3093 0.2261 36 1 2.4982 -4.6066 0.9397 37 1 2.0933 -6.0277 -1.0738 38 1 3.4636 -4.9156 -1.3098 39 1 0.6033 -4.4894 -2.2926 40 1 2.0142 -4.8881 -3.3032 41 1 3.8178 -1.8747 -2.3101 42 1 3.4243 -3.7702 -4.5337 43 1 3.3799 -1.9956 -4.6644 44 1 5.9103 -6.5265 -4.5451 45 1 5.2983 -0.7040 -5.0865 46 1 6.9467 -1.2442 -4.4603 47 1 6.8208 -3.3176 -5.9160 48 1 5.1724 -2.7776 -6.5426 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602818371.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:29 Heat of formation + Delta-G solvation = -40.218530 kcal Electronic energy + Delta-G solvation = -24108.167513 eV Core-core repulsion = 20970.015303 eV Total energy + Delta-G solvation = -3138.152210 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.55197 -36.75199 -36.07758 -34.41186 -32.05079 -31.69756 -29.96018 -27.19382 -26.81707 -25.44805 -24.44886 -23.10071 -22.02975 -21.01316 -19.81996 -18.96644 -18.85349 -16.23695 -15.93460 -15.62881 -15.28753 -14.80807 -14.40797 -14.25918 -13.91884 -13.81292 -13.29510 -13.12805 -12.84648 -12.55299 -12.22398 -12.19994 -12.06607 -11.78935 -11.69831 -11.40282 -11.13736 -11.08259 -10.84015 -10.68788 -10.57464 -10.55209 -10.37774 -10.35380 -10.24106 -10.02221 -9.73462 -9.35183 -8.88672 -8.70655 -8.22386 -7.93335 -7.25395 -5.83402 -3.82383 3.41379 3.47381 3.51500 4.11231 4.57501 4.75645 4.93938 4.96523 5.01939 5.28292 5.33055 5.41003 5.42960 5.47992 5.49270 5.58771 5.60365 5.72647 5.77621 5.78895 5.80807 5.87977 5.93839 5.98002 6.08454 6.14626 6.22745 6.27186 6.32119 6.38339 6.44400 6.46135 6.52988 6.59717 6.70590 6.73737 6.80930 7.01150 7.14517 7.18167 7.54385 7.56679 7.65777 8.08402 8.17399 8.41387 8.67598 9.13167 9.79174 11.27128 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016353 B = 0.005892 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.771129 B = 4751.322666 C = 5421.501387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.111 4.111 5 C 0.094 3.906 6 H 0.054 0.946 7 O -0.365 6.365 8 C 0.069 3.931 9 C -0.146 4.146 10 C -0.103 4.103 11 C 0.058 3.942 12 H 0.034 0.966 13 N -0.641 5.641 14 C 0.110 3.890 15 C 0.051 3.949 16 C -0.456 4.456 17 H 0.056 0.944 18 C 0.074 3.926 19 N -0.885 5.885 20 Si 0.883 3.117 21 H -0.282 1.282 22 H -0.291 1.291 23 H -0.277 1.277 24 C -0.220 4.220 25 C -0.158 4.158 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.034 0.966 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.100 0.900 39 H 0.045 0.955 40 H 0.070 0.930 41 H 0.333 0.667 42 H 0.068 0.932 43 H -0.011 1.011 44 H 0.254 0.746 45 H 0.059 0.941 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.176 7.540 6.524 14.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.149 4.149 5 C 0.035 3.965 6 H 0.072 0.928 7 O -0.284 6.284 8 C -0.008 4.008 9 C -0.184 4.184 10 C -0.142 4.142 11 C -0.053 4.053 12 H 0.052 0.948 13 N -0.273 5.273 14 C -0.019 4.019 15 C 0.050 3.950 16 C -0.494 4.494 17 H 0.074 0.926 18 C -0.128 4.128 19 N -0.523 5.523 20 Si 0.711 3.289 21 H -0.208 1.208 22 H -0.218 1.218 23 H -0.202 1.202 24 C -0.257 4.257 25 C -0.196 4.196 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.052 0.948 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.118 0.882 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.154 0.846 42 H 0.086 0.914 43 H 0.006 0.994 44 H 0.063 0.937 45 H 0.077 0.923 46 H 0.094 0.906 47 H 0.098 0.902 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.921 6.797 6.688 14.499 hybrid contribution 0.045 -0.048 -0.115 0.132 sum -10.877 6.749 6.574 14.390 Atomic orbital electron populations 1.21897 0.95859 1.01532 1.01207 1.21044 0.95227 0.95791 0.99109 1.21843 1.01284 0.96095 1.01196 1.21709 1.02474 0.92847 0.97874 1.22222 0.95193 0.92218 0.86834 0.92779 1.87902 1.69148 1.22783 1.48547 1.22463 0.97933 0.82161 0.98198 1.22022 1.04549 0.97636 0.94175 1.21485 0.97467 0.95596 0.99619 1.22085 0.91576 0.96027 0.95639 0.94778 1.60172 1.09031 1.41725 1.16388 1.21514 0.96609 0.97507 0.86316 1.18887 0.90236 0.92832 0.93029 1.20119 1.31647 0.92467 1.05167 0.92616 1.24812 0.95582 0.97313 0.95067 1.70013 1.42857 1.08581 1.30848 0.86760 0.81254 0.79493 0.81374 1.20798 1.21765 1.20227 1.23083 1.01837 0.91886 1.08902 1.22468 1.02317 0.99755 0.95095 0.92677 0.93077 0.93046 0.90268 0.93056 0.92474 0.93033 0.91191 0.90300 0.94776 0.89693 0.92698 0.88189 0.93610 0.91129 0.84620 0.91395 0.99351 0.93653 0.92259 0.90649 0.90153 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.95 37.16 0.33 -1.15 16 2 C -0.09 -1.07 2.87 -90.62 -0.26 -1.33 16 3 C -0.15 -1.51 9.19 37.16 0.34 -1.16 16 4 C -0.11 -1.46 3.98 -26.73 -0.11 -1.57 16 5 C 0.09 1.36 2.24 -26.68 -0.06 1.30 16 6 H 0.05 0.72 6.34 -51.93 -0.33 0.39 16 7 O -0.37 -5.95 9.77 -35.23 -0.34 -6.29 16 8 C 0.07 1.04 6.84 37.21 0.25 1.29 16 9 C -0.15 -2.51 5.97 -26.58 -0.16 -2.67 16 10 C -0.10 -1.75 5.63 -26.55 -0.15 -1.90 16 11 C 0.06 0.97 2.36 -67.57 -0.16 0.81 16 12 H 0.03 0.56 7.86 -51.92 -0.41 0.15 16 13 N -0.64 -12.75 4.90 -106.58 -0.52 -13.27 16 14 C 0.11 2.41 5.54 -3.82 -0.02 2.39 16 15 C 0.05 1.23 1.75 -155.67 -0.27 0.96 16 16 C -0.46 -12.26 8.15 -34.44 -0.28 -12.55 16 17 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 18 C 0.07 2.02 5.39 -17.82 -0.10 1.92 16 19 N -0.88 -25.02 12.92 55.43 0.72 -24.31 16 20 Si 0.88 21.64 29.54 -169.99 -5.02 16.62 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 C -0.22 -4.82 9.88 -26.74 -0.26 -5.08 16 25 C -0.16 -3.75 9.44 -26.74 -0.25 -4.00 16 26 H 0.05 0.57 6.46 -51.93 -0.34 0.23 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.08 1.01 7.70 -51.93 -0.40 0.61 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.16 6.37 -51.93 -0.33 0.83 16 35 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 2.15 7.76 -51.93 -0.40 1.74 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 1.36 7.36 -51.93 -0.38 0.98 16 41 H 0.33 6.52 6.18 -39.29 -0.24 6.28 16 42 H 0.07 1.66 7.32 -51.93 -0.38 1.27 16 43 H -0.01 -0.24 7.94 -51.93 -0.41 -0.65 16 44 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 46 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 47 H 0.08 2.04 8.14 -51.93 -0.42 1.61 16 48 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 368.00 15.07 5.55 5.55 Total: -1.00 -27.79 368.00 -9.86 -37.65 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -9.09 Total: 6.79 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: -1.15 Total: -22.73 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.19 Total: -37.58 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.34 Total: -6.29 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -27.79 -9.86 -37.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602818371.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.565 kcal (2) G-P(sol) polarization free energy of solvation -27.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds