Wall clock time and date at job start Tue Mar 31 2020 06:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47134 * 2 1 4 4 C 1.52998 * 109.46968 * 120.00026 * 2 1 3 5 5 C 1.53000 * 109.47009 * 65.85590 * 4 2 1 6 6 H 1.09001 * 109.48219 * 304.90304 * 5 4 2 7 7 O 1.42910 * 109.48210 * 64.93678 * 5 4 2 8 8 C 1.42896 * 114.09889 * 181.13976 * 7 5 4 9 9 C 1.53091 * 109.41483 * 298.84259 * 8 7 5 10 10 C 1.53178 * 109.16739 * 57.61119 * 9 8 7 11 11 C 1.53092 * 109.48180 * 184.87650 * 5 4 2 12 12 H 1.09001 * 109.52614 * 302.38147 * 11 5 4 13 13 N 1.46904 * 109.51882 * 62.50463 * 11 5 4 14 14 C 1.46897 * 110.99735 * 204.99911 * 13 11 5 15 15 C 1.53001 * 109.46952 * 174.11061 * 14 13 11 16 16 C 1.50703 * 115.55406 * 39.62998 * 15 14 13 17 17 H 1.08001 * 120.00114 * 265.27166 * 16 15 14 18 18 C 1.37876 * 119.99789 * 85.26163 * 16 15 14 19 19 N 1.31513 * 120.00275 * 358.77814 * 18 16 15 20 20 Si 1.86800 * 120.00003 * 178.77556 * 18 16 15 21 21 H 1.48505 * 109.46996 * 89.99965 * 20 18 16 22 22 H 1.48503 * 109.47343 * 210.00228 * 20 18 16 23 23 H 1.48496 * 109.47158 * 330.00424 * 20 18 16 24 24 C 1.53004 * 117.49845 * 253.92397 * 15 14 13 25 25 C 1.53005 * 60.00060 * 252.50602 * 24 15 14 26 26 H 1.08995 * 109.46986 * 300.00143 * 1 2 3 27 27 H 1.09002 * 109.46812 * 59.99637 * 1 2 3 28 28 H 1.08994 * 109.47208 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46636 * 240.00184 * 2 1 3 30 30 H 1.09002 * 109.47094 * 303.70017 * 3 2 1 31 31 H 1.09001 * 109.47107 * 63.69641 * 3 2 1 32 32 H 1.08993 * 109.46832 * 183.69746 * 3 2 1 33 33 H 1.09003 * 109.47060 * 305.85929 * 4 2 1 34 34 H 1.08999 * 109.46995 * 185.85572 * 4 2 1 35 35 H 1.08996 * 109.48144 * 178.86062 * 8 7 5 36 36 H 1.09002 * 109.48115 * 58.82517 * 8 7 5 37 37 H 1.08999 * 109.52291 * 297.70295 * 9 8 7 38 38 H 1.09007 * 109.52253 * 177.51622 * 9 8 7 39 39 H 1.08999 * 109.54719 * 183.15537 * 10 9 8 40 40 H 1.08999 * 109.54434 * 62.88186 * 10 9 8 41 41 H 1.00897 * 110.99857 * 81.04681 * 13 11 5 42 42 H 1.08998 * 109.47678 * 294.10831 * 14 13 11 43 43 H 1.08996 * 109.47170 * 54.11368 * 14 13 11 44 44 H 0.96995 * 120.00024 * 185.02837 * 19 18 16 45 45 H 1.08996 * 117.49805 * 359.97438 * 24 15 14 46 46 H 1.09002 * 117.50040 * 145.02413 * 24 15 14 47 47 H 1.09001 * 117.50239 * 252.50954 * 25 24 15 48 48 H 1.08996 * 117.49352 * 107.48566 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6537 -2.2000 1.1778 6 1 0.5765 -2.2878 1.0362 7 8 2.3306 -2.8169 0.0808 8 6 2.0193 -4.2007 -0.0932 9 6 2.4362 -4.9773 1.1585 10 6 1.7210 -4.3875 2.3779 11 6 2.0560 -2.8963 2.4805 12 1 3.1266 -2.7729 2.6440 13 7 1.3165 -2.3031 3.6027 14 6 2.0448 -2.4815 4.8659 15 6 1.3206 -1.7273 5.9829 16 6 -0.1843 -1.7968 5.9446 17 1 -0.7491 -1.0122 5.4631 18 6 -0.8401 -2.8622 6.5242 19 7 -0.1516 -3.8297 7.0893 20 14 -2.7068 -2.9313 6.5068 21 1 -3.1646 -3.6358 5.2823 22 1 -3.1863 -3.6623 7.7072 23 1 -3.2533 -1.5506 6.5170 24 6 1.9557 -0.4294 6.4859 25 6 1.9911 -1.6863 7.3577 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6236 1.9751 -0.8550 31 1 1.7318 1.9368 0.9213 32 1 3.1280 1.4431 -0.0663 33 1 1.5935 -0.2715 2.1361 34 1 3.1250 -0.6314 1.3032 35 1 2.5579 -4.5886 -0.9578 36 1 0.9469 -4.3149 -0.2514 37 1 3.5147 -4.8970 1.2947 38 1 2.1595 -6.0256 1.0458 39 1 2.0559 -4.8993 3.2801 40 1 0.6441 -4.5123 2.2646 41 1 0.3853 -2.6865 3.6650 42 1 2.0891 -3.5421 5.1132 43 1 3.0567 -2.0904 4.7603 44 1 -0.6083 -4.6137 7.4321 45 1 2.8896 -0.1130 6.0214 46 1 1.2850 0.3746 6.7892 47 1 1.3437 -1.7093 8.2343 48 1 2.9481 -2.1966 7.4662 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602818901.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:34 Heat of formation + Delta-G solvation = -50.669476 kcal Electronic energy + Delta-G solvation = -23803.907343 eV Core-core repulsion = 20665.301945 eV Total energy + Delta-G solvation = -3138.605397 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.55835 -36.86301 -35.95992 -34.70635 -32.24274 -31.90246 -29.92210 -27.01088 -26.73037 -25.55037 -24.65285 -22.87955 -21.74702 -20.96061 -20.12116 -19.57678 -18.97368 -16.32664 -15.79253 -15.76619 -15.01299 -14.66878 -14.53296 -14.48686 -14.07892 -13.74969 -13.53486 -13.13115 -13.01180 -12.45977 -12.40787 -12.07942 -11.94330 -11.73459 -11.65362 -11.42324 -11.15974 -11.06655 -10.97531 -10.84239 -10.70867 -10.62925 -10.42942 -10.40870 -10.32250 -10.07715 -9.83061 -9.46212 -9.08095 -8.84118 -8.40234 -8.04446 -7.34283 -6.01561 -4.06728 3.26862 3.35498 3.39210 3.99322 4.39979 4.83996 4.87645 5.03037 5.11132 5.18420 5.21521 5.27060 5.29135 5.42215 5.48020 5.56397 5.57907 5.75868 5.80588 5.80893 5.96262 5.97393 6.04797 6.06264 6.06981 6.13963 6.21407 6.27639 6.29359 6.35291 6.44980 6.48783 6.51709 6.60372 6.62645 6.78615 6.83846 6.84675 6.98334 7.18120 7.40571 7.50677 7.58523 7.89239 8.08158 8.38026 8.54592 8.96845 9.57781 11.06427 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013937 B = 0.005553 C = 0.005149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.530566 B = 5041.261464 C = 5436.807375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.145 4.145 4 C -0.096 4.096 5 C 0.103 3.897 6 H 0.058 0.942 7 O -0.382 6.382 8 C 0.063 3.937 9 C -0.151 4.151 10 C -0.153 4.153 11 C 0.059 3.941 12 H 0.073 0.927 13 N -0.662 5.662 14 C 0.110 3.890 15 C 0.050 3.950 16 C -0.480 4.480 17 H 0.061 0.939 18 C 0.067 3.933 19 N -0.882 5.882 20 Si 0.885 3.115 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.273 1.273 24 C -0.208 4.208 25 C -0.161 4.161 26 H 0.057 0.943 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.097 0.903 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.353 0.647 42 H 0.026 0.974 43 H 0.037 0.963 44 H 0.258 0.742 45 H 0.062 0.938 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.151 1.347 -13.159 13.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.133 4.133 5 C 0.045 3.955 6 H 0.076 0.924 7 O -0.301 6.301 8 C -0.014 4.014 9 C -0.190 4.190 10 C -0.192 4.192 11 C -0.052 4.052 12 H 0.092 0.908 13 N -0.294 5.294 14 C -0.019 4.019 15 C 0.050 3.950 16 C -0.518 4.518 17 H 0.079 0.921 18 C -0.135 4.135 19 N -0.520 5.520 20 Si 0.713 3.287 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.198 1.198 24 C -0.245 4.245 25 C -0.199 4.199 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.116 0.884 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.174 0.826 42 H 0.044 0.956 43 H 0.055 0.945 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.092 0.908 47 H 0.098 0.902 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.486 1.952 -13.214 14.091 hybrid contribution -1.299 -1.524 0.517 2.069 sum 3.187 0.427 -12.697 13.098 Atomic orbital electron populations 1.21874 0.95625 1.01588 1.01303 1.21083 0.95583 0.95660 0.99043 1.21827 1.00583 0.96425 1.01442 1.21585 1.01064 0.92094 0.98573 1.22111 0.95595 0.92950 0.84846 0.92401 1.87896 1.69521 1.22449 1.50223 1.22474 0.99458 0.82324 0.97164 1.22165 1.01251 0.99610 0.95926 1.22378 1.00550 0.98147 0.98116 1.22178 0.99137 0.90859 0.93052 0.90835 1.60418 1.06115 1.60455 1.02420 1.21369 0.94070 0.97761 0.88716 1.18780 0.93776 0.92574 0.89891 1.20418 0.88975 1.07291 1.35114 0.92066 1.24994 0.97624 0.96247 0.94636 1.70006 1.35103 1.07811 1.39056 0.86708 0.86451 0.78190 0.77387 1.20787 1.21440 1.19830 1.22989 1.01004 0.92927 1.07573 1.22502 1.00069 0.99960 0.97332 0.92356 0.93552 0.92810 0.91221 0.93309 0.92589 0.93075 0.88416 0.92224 0.89545 0.93649 0.91397 0.91535 0.91407 0.91863 0.82634 0.95601 0.94456 0.93254 0.91948 0.90826 0.90168 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.97 37.16 0.33 -1.49 16 2 C -0.10 -1.21 2.87 -90.62 -0.26 -1.47 16 3 C -0.15 -1.66 9.19 37.16 0.34 -1.32 16 4 C -0.10 -1.39 4.31 -26.73 -0.12 -1.50 16 5 C 0.10 1.54 2.22 -26.68 -0.06 1.48 16 6 H 0.06 0.90 6.38 -51.93 -0.33 0.56 16 7 O -0.38 -5.56 9.84 -35.23 -0.35 -5.90 16 8 C 0.06 0.77 6.84 37.20 0.25 1.02 16 9 C -0.15 -1.91 6.14 -26.59 -0.16 -2.07 16 10 C -0.15 -2.35 5.29 -26.55 -0.14 -2.49 16 11 C 0.06 0.97 2.08 -67.57 -0.14 0.83 16 12 H 0.07 1.26 7.71 -51.93 -0.40 0.86 16 13 N -0.66 -12.73 5.27 -106.58 -0.56 -13.29 16 14 C 0.11 2.37 5.64 -3.83 -0.02 2.35 16 15 C 0.05 1.21 1.80 -155.65 -0.28 0.93 16 16 C -0.48 -12.44 7.49 -34.44 -0.26 -12.70 16 17 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 18 C 0.07 1.77 5.41 -17.82 -0.10 1.67 16 19 N -0.88 -24.22 12.77 55.43 0.71 -23.51 16 20 Si 0.88 20.57 29.54 -169.99 -5.02 15.55 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 C -0.21 -4.58 9.88 -26.73 -0.26 -4.84 16 25 C -0.16 -3.79 9.31 -26.73 -0.25 -4.04 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.69 6.49 -51.93 -0.34 0.35 16 29 H 0.07 0.92 7.67 -51.93 -0.40 0.52 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 1.58 7.54 -51.93 -0.39 1.19 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.14 7.70 -51.93 -0.40 0.74 16 40 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 41 H 0.35 7.40 7.45 -39.29 -0.29 7.11 16 42 H 0.03 0.61 7.69 -51.93 -0.40 0.21 16 43 H 0.04 0.77 7.71 -51.93 -0.40 0.37 16 44 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 45 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 46 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 47 H 0.08 2.04 8.14 -51.93 -0.42 1.61 16 48 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 370.68 15.07 5.59 5.59 Total: -1.00 -26.26 370.68 -9.99 -36.25 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -9.23 Total: 8.96 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: -1.12 Total: -23.64 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.15 Total: -36.81 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.35 Total: -5.90 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -26.26 -9.99 -36.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602818901.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.418 kcal (2) G-P(sol) polarization free energy of solvation -26.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds