Wall clock time and date at job start Tue Mar 31 2020 06:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47134 * 2 1 4 4 C 1.52998 * 109.46968 * 120.00026 * 2 1 3 5 5 C 1.53000 * 109.47009 * 65.85590 * 4 2 1 6 6 H 1.09001 * 109.48219 * 304.90304 * 5 4 2 7 7 O 1.42910 * 109.48210 * 64.93678 * 5 4 2 8 8 C 1.42896 * 114.09889 * 181.13976 * 7 5 4 9 9 C 1.53091 * 109.41483 * 298.84259 * 8 7 5 10 10 C 1.53178 * 109.16739 * 57.61119 * 9 8 7 11 11 C 1.53092 * 109.48180 * 184.87650 * 5 4 2 12 12 H 1.09001 * 109.52614 * 302.38147 * 11 5 4 13 13 N 1.46904 * 109.51882 * 62.50463 * 11 5 4 14 14 C 1.46897 * 110.99735 * 204.99911 * 13 11 5 15 15 C 1.53001 * 109.46952 * 174.11061 * 14 13 11 16 16 C 1.50703 * 115.55406 * 39.62998 * 15 14 13 17 17 H 1.08001 * 120.00114 * 265.27166 * 16 15 14 18 18 C 1.37876 * 119.99789 * 85.26163 * 16 15 14 19 19 N 1.31513 * 120.00275 * 358.77814 * 18 16 15 20 20 Si 1.86800 * 120.00003 * 178.77556 * 18 16 15 21 21 H 1.48505 * 109.46996 * 89.99965 * 20 18 16 22 22 H 1.48503 * 109.47343 * 210.00228 * 20 18 16 23 23 H 1.48496 * 109.47158 * 330.00424 * 20 18 16 24 24 C 1.53004 * 117.49845 * 253.92397 * 15 14 13 25 25 C 1.53005 * 60.00060 * 252.50602 * 24 15 14 26 26 H 1.08995 * 109.46986 * 300.00143 * 1 2 3 27 27 H 1.09002 * 109.46812 * 59.99637 * 1 2 3 28 28 H 1.08994 * 109.47208 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46636 * 240.00184 * 2 1 3 30 30 H 1.09002 * 109.47094 * 303.70017 * 3 2 1 31 31 H 1.09001 * 109.47107 * 63.69641 * 3 2 1 32 32 H 1.08993 * 109.46832 * 183.69746 * 3 2 1 33 33 H 1.09003 * 109.47060 * 305.85929 * 4 2 1 34 34 H 1.08999 * 109.46995 * 185.85572 * 4 2 1 35 35 H 1.08996 * 109.48144 * 178.86062 * 8 7 5 36 36 H 1.09002 * 109.48115 * 58.82517 * 8 7 5 37 37 H 1.08999 * 109.52291 * 297.70295 * 9 8 7 38 38 H 1.09007 * 109.52253 * 177.51622 * 9 8 7 39 39 H 1.08999 * 109.54719 * 183.15537 * 10 9 8 40 40 H 1.08999 * 109.54434 * 62.88186 * 10 9 8 41 41 H 1.00897 * 110.99857 * 81.04681 * 13 11 5 42 42 H 1.08998 * 109.47678 * 294.10831 * 14 13 11 43 43 H 1.08996 * 109.47170 * 54.11368 * 14 13 11 44 44 H 0.96995 * 120.00024 * 185.02837 * 19 18 16 45 45 H 1.08996 * 117.49805 * 359.97438 * 24 15 14 46 46 H 1.09002 * 117.50040 * 145.02413 * 24 15 14 47 47 H 1.09001 * 117.50239 * 252.50954 * 25 24 15 48 48 H 1.08996 * 117.49352 * 107.48566 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6537 -2.2000 1.1778 6 1 0.5765 -2.2878 1.0362 7 8 2.3306 -2.8169 0.0808 8 6 2.0193 -4.2007 -0.0932 9 6 2.4362 -4.9773 1.1585 10 6 1.7210 -4.3875 2.3779 11 6 2.0560 -2.8963 2.4805 12 1 3.1266 -2.7729 2.6440 13 7 1.3165 -2.3031 3.6027 14 6 2.0448 -2.4815 4.8659 15 6 1.3206 -1.7273 5.9829 16 6 -0.1843 -1.7968 5.9446 17 1 -0.7491 -1.0122 5.4631 18 6 -0.8401 -2.8622 6.5242 19 7 -0.1516 -3.8297 7.0893 20 14 -2.7068 -2.9313 6.5068 21 1 -3.1646 -3.6358 5.2823 22 1 -3.1863 -3.6623 7.7072 23 1 -3.2533 -1.5506 6.5170 24 6 1.9557 -0.4294 6.4859 25 6 1.9911 -1.6863 7.3577 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6236 1.9751 -0.8550 31 1 1.7318 1.9368 0.9213 32 1 3.1280 1.4431 -0.0663 33 1 1.5935 -0.2715 2.1361 34 1 3.1250 -0.6314 1.3032 35 1 2.5579 -4.5886 -0.9578 36 1 0.9469 -4.3149 -0.2514 37 1 3.5147 -4.8970 1.2947 38 1 2.1595 -6.0256 1.0458 39 1 2.0559 -4.8993 3.2801 40 1 0.6441 -4.5123 2.2646 41 1 0.3853 -2.6865 3.6650 42 1 2.0891 -3.5421 5.1132 43 1 3.0567 -2.0904 4.7603 44 1 -0.6083 -4.6137 7.4321 45 1 2.8896 -0.1130 6.0214 46 1 1.2850 0.3746 6.7892 47 1 1.3437 -1.7093 8.2343 48 1 2.9481 -2.1966 7.4662 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602818901.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:33 Heat of formation + Delta-G solvation = -63.391949 kcal Electronic energy + Delta-G solvation = -23804.459031 eV Core-core repulsion = 20665.301945 eV Total energy + Delta-G solvation = -3139.157085 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.76535 -38.62655 -36.99699 -36.16859 -33.93723 -33.40942 -31.25068 -28.04479 -27.91010 -27.42891 -26.16561 -24.19302 -22.96110 -22.77757 -21.46997 -20.77557 -20.63134 -17.96005 -17.24022 -16.99372 -16.58093 -16.24066 -15.87876 -15.74759 -15.44802 -15.25254 -14.81977 -14.59637 -14.09097 -14.01957 -13.72890 -13.32068 -13.30098 -13.05502 -12.95788 -12.88215 -12.82557 -12.71492 -12.39274 -12.29249 -12.16717 -12.01458 -11.89960 -11.67295 -11.46184 -11.38775 -11.26419 -10.94623 -10.80368 -10.45138 -10.25226 -9.89706 -8.94067 -8.04799 -6.14331 1.40827 1.44837 1.52778 2.45047 2.86633 3.23354 3.41279 3.66903 3.67777 3.93814 3.95478 4.14148 4.16849 4.20544 4.29205 4.35441 4.40196 4.49472 4.61575 4.65122 4.71292 4.75942 4.86139 4.88266 4.90221 4.94573 4.95830 5.00342 5.02704 5.06913 5.07353 5.15010 5.20131 5.20981 5.28652 5.30735 5.35088 5.46348 5.55575 5.62933 5.68427 5.71869 5.82505 6.27794 6.45260 6.59201 6.72279 6.93543 7.52483 9.02656 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013937 B = 0.005553 C = 0.005149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.530566 B = 5041.261464 C = 5436.807375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 C -0.143 4.143 4 C -0.092 4.092 5 C 0.112 3.888 6 H 0.054 0.946 7 O -0.389 6.389 8 C 0.058 3.942 9 C -0.144 4.144 10 C -0.150 4.150 11 C 0.061 3.939 12 H 0.067 0.933 13 N -0.659 5.659 14 C 0.126 3.874 15 C 0.027 3.973 16 C -0.484 4.484 17 H 0.052 0.948 18 C 0.027 3.973 19 N -0.910 5.910 20 Si 0.941 3.059 21 H -0.274 1.274 22 H -0.292 1.292 23 H -0.272 1.272 24 C -0.186 4.186 25 C -0.167 4.167 26 H 0.048 0.952 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.114 0.886 36 H 0.051 0.949 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.047 0.953 40 H 0.057 0.943 41 H 0.342 0.658 42 H -0.001 1.001 43 H 0.048 0.952 44 H 0.256 0.744 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.055 0.945 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.253 1.687 -15.099 15.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 C -0.200 4.200 4 C -0.130 4.130 5 C 0.054 3.946 6 H 0.072 0.928 7 O -0.307 6.307 8 C -0.018 4.018 9 C -0.183 4.183 10 C -0.190 4.190 11 C -0.050 4.050 12 H 0.085 0.915 13 N -0.290 5.290 14 C -0.004 4.004 15 C 0.026 3.974 16 C -0.522 4.522 17 H 0.070 0.930 18 C -0.172 4.172 19 N -0.548 5.548 20 Si 0.767 3.233 21 H -0.200 1.200 22 H -0.218 1.218 23 H -0.197 1.197 24 C -0.223 4.223 25 C -0.205 4.205 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.132 0.868 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.161 0.839 42 H 0.017 0.983 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.104 0.896 46 H 0.090 0.910 47 H 0.074 0.926 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.596 2.301 -15.173 16.019 hybrid contribution -1.301 -1.630 1.116 2.365 sum 3.294 0.671 -14.056 14.453 Atomic orbital electron populations 1.21853 0.95415 1.01269 1.01655 1.21034 0.95700 0.96279 0.97855 1.21803 1.00905 0.95500 1.01814 1.21513 1.00688 0.91945 0.98806 1.21935 0.95313 0.93139 0.84187 0.92846 1.87890 1.69502 1.23799 1.49533 1.22699 1.00372 0.81013 0.97738 1.22132 1.00863 1.00624 0.94635 1.22305 1.00484 0.97364 0.98811 1.22216 0.98274 0.91736 0.92773 0.91493 1.60384 1.05518 1.60843 1.02234 1.21123 0.94474 0.95737 0.89069 1.18967 0.93310 0.94406 0.90686 1.20566 0.90222 1.06875 1.34573 0.92968 1.25563 1.01139 0.96024 0.94505 1.70112 1.36412 1.08243 1.40068 0.85823 0.82139 0.78019 0.77288 1.19997 1.21804 1.19671 1.22979 1.01568 0.91931 1.05869 1.22396 1.00038 1.01621 0.96439 0.93281 0.91902 0.93469 0.91206 0.91852 0.93149 0.92671 0.90308 0.92544 0.86805 0.93058 0.91304 0.89613 0.93431 0.92440 0.83903 0.98266 0.93404 0.93500 0.89602 0.90964 0.92595 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 8.97 71.98 0.65 -2.74 16 2 C -0.09 -2.15 2.87 -10.79 -0.03 -2.18 16 3 C -0.14 -2.99 9.19 71.98 0.66 -2.33 16 4 C -0.09 -2.59 4.31 30.59 0.13 -2.46 16 5 C 0.11 3.26 2.22 30.63 0.07 3.33 16 6 H 0.05 1.61 6.38 -2.39 -0.02 1.60 16 7 O -0.39 -10.53 9.84 -148.98 -1.47 -12.00 16 8 C 0.06 1.27 6.84 72.01 0.49 1.77 16 9 C -0.14 -3.38 6.14 30.68 0.19 -3.19 16 10 C -0.15 -4.59 5.29 30.71 0.16 -4.43 16 11 C 0.06 1.98 2.08 45.01 0.09 2.08 16 12 H 0.07 2.27 7.71 -2.39 -0.02 2.25 16 13 N -0.66 -25.58 5.27 -491.10 -2.59 -28.17 16 14 C 0.13 5.46 5.64 86.30 0.49 5.95 16 15 C 0.03 1.30 1.80 -52.92 -0.10 1.20 16 16 C -0.48 -25.35 7.49 25.60 0.19 -25.15 16 17 H 0.05 2.78 7.81 -2.91 -0.02 2.75 16 18 C 0.03 1.45 5.41 84.65 0.46 1.91 16 19 N -0.91 -50.79 12.77 21.45 0.27 -50.52 16 20 Si 0.94 42.52 29.54 68.60 2.03 44.55 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 C -0.19 -8.06 9.88 30.60 0.30 -7.75 16 25 C -0.17 -7.92 9.31 30.60 0.28 -7.63 16 26 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.05 1.15 6.49 -2.39 -0.02 1.13 16 29 H 0.07 1.69 7.67 -2.39 -0.02 1.67 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 2.53 7.54 -2.39 -0.02 2.51 16 34 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 39 H 0.05 1.63 7.70 -2.39 -0.02 1.61 16 40 H 0.06 1.80 8.09 -2.39 -0.02 1.78 16 41 H 0.34 14.61 7.45 -89.70 -0.67 13.94 16 42 H 0.00 -0.04 7.69 -2.39 -0.02 -0.06 16 43 H 0.05 1.95 7.71 -2.39 -0.02 1.93 16 44 H 0.26 13.83 8.32 -92.71 -0.77 13.06 16 45 H 0.09 3.30 8.08 -2.39 -0.02 3.28 16 46 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 47 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 48 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -55.60 370.68 2.52 -53.09 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: 0.23 Total: 34.70 kcal Atomic # 6 Polarization: -45.69 SS G_CDS: 4.04 Total: -41.65 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -2.31 Total: -78.69 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -1.47 Total: -12.00 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -55.60 2.52 -53.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602818901.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.303 kcal (2) G-P(sol) polarization free energy of solvation -55.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds